Wall clock time and date at job start Mon Mar 8 2021 09:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86292 * 109.47228 * 2 1 4 4 C 1.50696 * 109.47131 * 120.00472 * 2 1 3 5 5 C 1.38130 * 120.01246 * 254.99671 * 4 2 1 6 6 C 1.38280 * 120.06298 * 179.97438 * 5 4 2 7 7 C 1.38337 * 120.09757 * 359.97438 * 6 5 4 8 8 Br 1.89099 * 119.97858 * 180.02562 * 7 6 5 9 9 C 1.38247 * 120.03983 * 359.97438 * 7 6 5 10 10 C 1.38700 * 119.93336 * 359.78911 * 9 7 6 11 11 O 1.35901 * 120.04875 * 180.25324 * 10 9 7 12 12 C 1.42895 * 117.00423 * 0.21153 * 11 10 9 13 13 C 1.53002 * 109.47625 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.46559 * 304.99842 * 13 12 11 15 15 C 1.52995 * 109.47188 * 64.99459 * 13 12 11 16 16 C 1.52997 * 109.47421 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47217 * 300.00690 * 16 15 13 18 18 H 1.09002 * 109.46920 * 299.99330 * 17 16 15 19 19 O 1.42900 * 109.47071 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47298 * 59.99640 * 17 16 15 21 21 C 1.52990 * 109.47430 * 185.00091 * 13 12 11 22 22 H 0.96700 * 114.00311 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46477 * 240.00110 * 2 1 3 24 24 H 1.48500 * 110.00207 * 180.02562 * 3 2 1 25 25 H 1.48510 * 110.00345 * 301.32145 * 3 2 1 26 26 H 1.07991 * 119.97362 * 0.02562 * 5 4 2 27 27 H 1.07991 * 119.94981 * 179.97438 * 6 5 4 28 28 H 1.08005 * 120.03418 * 180.02562 * 9 7 6 29 29 H 1.09006 * 109.46999 * 299.99804 * 12 11 10 30 30 H 1.08999 * 109.47176 * 59.99575 * 12 11 10 31 31 H 1.09004 * 109.47264 * 300.00915 * 15 13 12 32 32 H 1.09002 * 109.47284 * 60.00184 * 15 13 12 33 33 H 1.08994 * 109.47414 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.46628 * 60.00198 * 16 15 13 35 35 H 0.96698 * 113.99865 * 59.99756 * 19 17 16 36 36 H 1.08999 * 109.47116 * 180.02562 * 20 17 16 37 37 H 1.08992 * 109.47312 * 60.00019 * 20 17 16 38 38 H 1.09003 * 109.47088 * 300.00001 * 21 13 12 39 39 H 1.09006 * 109.47598 * 59.99525 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.4536 0.0159 2.2828 6 6 2.9143 -0.6350 3.4125 7 6 2.8530 -2.0147 3.4918 8 35 3.4833 -2.9012 5.0386 9 6 2.3301 -2.7457 2.4413 10 6 1.8631 -2.0941 1.3095 11 8 1.3439 -2.8100 0.2776 12 6 1.3057 -4.2305 0.4279 13 6 0.6938 -4.8599 -0.8253 14 1 -0.2838 -4.4164 -1.0141 15 6 1.6099 -4.6041 -2.0237 16 6 0.9978 -5.2328 -3.2770 17 6 0.8414 -6.7402 -3.0670 18 1 1.8189 -7.1841 -2.8784 19 8 0.2691 -7.3273 -4.2375 20 6 -0.0747 -6.9960 -1.8687 21 6 0.5380 -6.3672 -0.6150 22 1 -0.3934 -0.8834 0.0004 23 1 1.7923 -0.5139 -0.8901 24 1 3.5350 1.7701 -0.0006 25 1 1.5354 2.4772 -1.1921 26 1 2.5014 1.0931 2.2238 27 1 3.3226 -0.0653 4.2341 28 1 2.2819 -3.8229 2.5035 29 1 2.3187 -4.6086 0.5662 30 1 0.7001 -4.4878 1.2969 31 1 1.7210 -3.5301 -2.1734 32 1 2.5876 -5.0475 -1.8348 33 1 1.6506 -5.0509 -4.1306 34 1 0.0203 -4.7889 -3.4657 35 1 0.7975 -7.2039 -5.0379 36 1 -0.1857 -8.0699 -1.7189 37 1 -1.0522 -6.5521 -2.0573 38 1 1.5156 -6.8107 -0.4261 39 1 -0.1147 -6.5495 0.2388 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_12104246_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:50:23 Heat of formation + Delta-G solvation = -104.668276 kcal Electronic energy + Delta-G solvation = -22381.430926 eV Core-core repulsion = 18915.389214 eV Total energy + Delta-G solvation = -3466.041712 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.050 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67190 -40.19620 -38.75350 -37.61729 -36.72627 -33.72212 -32.17662 -31.87387 -31.20893 -30.69787 -26.92151 -26.34469 -23.93139 -23.71054 -22.66677 -22.01441 -20.89142 -19.26056 -18.32511 -18.23625 -17.58522 -17.24807 -16.80784 -16.44935 -15.66582 -15.53359 -15.50883 -15.45602 -14.92887 -14.81713 -14.41673 -14.20015 -13.90290 -13.71224 -13.33197 -13.24412 -13.01799 -12.79696 -12.71474 -12.27204 -12.18411 -12.12555 -11.72274 -11.69619 -11.50227 -11.40109 -11.31057 -11.18674 -11.13250 -10.76544 -9.98488 -9.36248 -4.92169 -0.17819 0.17535 0.49102 1.34768 1.60759 1.94971 1.96634 2.36941 3.18144 3.50463 3.56939 3.59735 3.64153 3.72592 3.87137 3.91122 3.98650 4.03938 4.08728 4.16773 4.24225 4.30574 4.30926 4.41945 4.43317 4.45340 4.55249 4.57254 4.76182 4.84730 4.92990 5.01671 5.03802 5.05294 5.10070 5.13115 5.14614 5.25845 5.37939 5.46982 6.16537 6.54610 6.81066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.079 4.079 3 Si 0.811 3.189 4 C -0.144 4.144 5 C -0.067 4.067 6 C -0.125 4.125 7 C -0.059 4.059 8 Br -0.043 7.043 9 C -0.185 4.185 10 C 0.141 3.859 11 O -0.316 6.316 12 C 0.059 3.941 13 C -0.081 4.081 14 H 0.079 0.921 15 C -0.108 4.108 16 C -0.147 4.147 17 C 0.101 3.899 18 H 0.062 0.938 19 O -0.590 6.590 20 C -0.113 4.113 21 C -0.104 4.104 22 H 0.373 0.627 23 H 0.069 0.931 24 H -0.262 1.262 25 H -0.298 1.298 26 H 0.168 0.832 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -0.295 1.488 2.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.187 4.187 3 Si 0.713 3.287 4 C -0.145 4.145 5 C -0.085 4.085 6 C -0.145 4.145 7 C -0.139 4.139 8 Br 0.043 6.957 9 C -0.206 4.206 10 C 0.094 3.906 11 O -0.230 6.230 12 C -0.016 4.016 13 C -0.100 4.100 14 H 0.098 0.902 15 C -0.146 4.146 16 C -0.185 4.185 17 C 0.042 3.958 18 H 0.080 0.920 19 O -0.399 6.399 20 C -0.151 4.151 21 C -0.141 4.141 22 H 0.222 0.778 23 H 0.086 0.914 24 H -0.187 1.187 25 H -0.226 1.226 26 H 0.185 0.815 27 H 0.175 0.825 28 H 0.167 0.833 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.913 0.460 1.891 2.729 hybrid contribution 0.242 -1.608 -1.430 2.165 sum 2.155 -1.148 0.461 2.485 Atomic orbital electron populations 1.86693 1.17244 1.34043 1.97160 1.25535 0.84662 1.13719 0.94769 0.92229 0.76723 0.73788 0.85989 1.19973 1.04527 0.91061 0.98968 1.21122 0.95484 1.00693 0.91226 1.21312 1.01265 0.92113 0.99786 1.21774 1.02917 0.95465 0.93727 1.96804 1.86975 1.78100 1.33867 1.21311 1.04558 1.01318 0.93385 1.18766 0.93937 0.90823 0.87103 1.86031 1.77125 1.21016 1.38778 1.23100 1.01991 0.76847 0.99642 1.21168 0.99954 0.95794 0.93051 0.90237 1.21477 0.98694 1.00839 0.93564 1.22215 1.01642 0.95948 0.98678 1.21918 0.96310 0.91883 0.85672 0.92025 1.86484 1.53561 1.79814 1.20023 1.21470 0.98943 1.01477 0.93188 1.21445 1.02469 0.92697 0.97528 0.77834 0.91377 1.18709 1.22569 0.81519 0.82457 0.83315 0.90936 0.90495 0.91879 0.91238 0.90970 0.92035 0.75777 0.91177 0.91936 0.90388 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.91 12.65 -148.98 -1.89 -3.80 16 2 C -0.08 -0.14 2.33 71.23 0.17 0.03 16 3 Si 0.81 -0.26 30.17 68.60 2.07 1.81 16 4 C -0.14 -0.17 5.28 -19.77 -0.10 -0.28 16 5 C -0.07 0.11 8.66 22.25 0.19 0.30 16 6 C -0.12 0.14 9.78 22.30 0.22 0.36 16 7 C -0.06 -0.05 6.22 22.30 0.14 0.09 16 8 Br -0.04 -0.04 33.70 -20.37 -0.69 -0.73 16 9 C -0.19 -0.09 8.78 22.38 0.20 0.11 16 10 C 0.14 0.19 6.61 22.50 0.15 0.34 16 11 O -0.32 -0.02 8.55 -92.44 -0.79 -0.81 16 12 C 0.06 -0.24 4.12 71.98 0.30 0.06 16 13 C -0.08 0.33 2.43 -10.80 -0.03 0.31 16 14 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 15 C -0.11 0.31 5.10 30.59 0.16 0.47 16 16 C -0.15 0.31 5.54 30.59 0.17 0.48 16 17 C 0.10 -0.10 3.47 30.59 0.11 0.00 16 18 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 19 O -0.59 -1.19 13.32 -148.98 -1.98 -3.18 16 20 C -0.11 0.16 5.57 30.61 0.17 0.33 16 21 C -0.10 0.55 5.21 30.61 0.16 0.70 16 22 H 0.37 0.05 8.56 -74.06 -0.63 -0.59 16 23 H 0.07 0.18 7.84 -2.38 -0.02 0.17 16 24 H -0.26 -0.43 7.11 99.48 0.71 0.28 16 25 H -0.30 -2.07 7.11 99.48 0.71 -1.36 16 26 H 0.17 -1.19 5.13 -2.92 -0.01 -1.20 16 27 H 0.16 -0.78 8.06 -2.92 -0.02 -0.81 16 28 H 0.15 -0.34 6.30 -2.91 -0.02 -0.36 16 29 H 0.07 -0.38 7.65 -2.38 -0.02 -0.40 16 30 H 0.08 -0.44 7.67 -2.39 -0.02 -0.46 16 31 H 0.06 -0.04 7.82 -2.38 -0.02 -0.06 16 32 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.39 -2.19 9.08 -74.06 -0.67 -2.86 16 36 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.08 -0.57 8.14 -2.38 -0.02 -0.58 16 Total: 0.00 -11.66 333.09 -1.49 -13.14 By element: Atomic # 1 Polarization: -9.53 SS G_CDS: -0.20 Total: -9.73 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 1.99 Total: 3.29 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -4.66 Total: -7.79 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.07 Total: 1.81 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -0.69 Total: -0.73 kcal Total: -11.66 -1.49 -13.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_12104246_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.524 kcal (2) G-P(sol) polarization free energy of solvation -11.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds