Wall clock time and date at job start Mon Mar 8 2021 08:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86301 * 109.46789 * 2 1 4 4 C 1.50697 * 109.47049 * 239.99786 * 2 1 3 5 5 C 1.38127 * 120.01540 * 104.97508 * 4 2 1 6 6 C 1.38477 * 120.03296 * 180.02562 * 5 4 2 7 7 F 1.35094 * 119.97101 * 180.02562 * 6 5 4 8 8 C 1.38435 * 120.05772 * 0.02562 * 6 5 4 9 9 C 1.38176 * 120.02760 * 359.74021 * 8 6 5 10 10 C 1.38680 * 119.97379 * 0.50876 * 9 8 6 11 11 O 1.35945 * 120.03540 * 179.77100 * 10 9 8 12 12 C 1.42901 * 116.99627 * 359.72231 * 11 10 9 13 13 C 1.52998 * 109.47046 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46903 * 305.00059 * 13 12 11 15 15 C 1.52997 * 109.47449 * 64.99681 * 13 12 11 16 16 C 1.52998 * 109.47449 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47067 * 300.00474 * 16 15 13 18 18 H 1.09000 * 109.47181 * 299.99734 * 17 16 15 19 19 O 1.42902 * 109.47124 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47373 * 59.99480 * 17 16 15 21 21 C 1.52998 * 109.47449 * 300.00286 * 20 17 16 22 22 H 0.96694 * 114.00082 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46957 * 119.99401 * 2 1 3 24 24 H 1.48503 * 109.99527 * 180.02562 * 3 2 1 25 25 H 1.48501 * 109.99995 * 301.31337 * 3 2 1 26 26 H 1.07998 * 119.98448 * 0.05015 * 5 4 2 27 27 H 1.07998 * 119.98757 * 179.97438 * 8 6 5 28 28 H 1.08006 * 120.01041 * 180.27777 * 9 8 6 29 29 H 1.08999 * 109.47144 * 300.00194 * 12 11 10 30 30 H 1.08998 * 109.47043 * 59.99793 * 12 11 10 31 31 H 1.08999 * 109.47516 * 300.00723 * 15 13 12 32 32 H 1.09000 * 109.46760 * 60.00290 * 15 13 12 33 33 H 1.08996 * 109.47008 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.46903 * 60.00378 * 16 15 13 35 35 H 0.96699 * 114.00051 * 59.99429 * 19 17 16 36 36 H 1.08999 * 109.47516 * 179.97438 * 20 17 16 37 37 H 1.09003 * 109.46559 * 60.00492 * 20 17 16 38 38 H 1.09000 * 109.46903 * 299.99622 * 21 20 17 39 39 H 1.08996 * 109.47008 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.4531 0.0159 -2.2831 6 6 2.9143 -0.6365 -3.4141 7 9 3.4247 0.0751 -4.4427 8 6 2.8527 -2.0173 -3.4917 9 6 2.3357 -2.7467 -2.4381 10 6 1.8687 -2.0942 -1.3069 11 8 1.3556 -2.8103 -0.2715 12 6 1.3225 -4.2313 -0.4189 13 6 0.7161 -4.8603 0.8370 14 1 1.2707 -4.5272 1.7142 15 6 -0.7472 -4.4326 0.9661 16 6 -1.3538 -5.0622 2.2216 17 6 -1.2754 -6.5865 2.1167 18 1 -1.8298 -6.9193 1.2392 19 8 -1.8425 -7.1746 3.2891 20 6 0.1879 -7.0143 1.9876 21 6 0.7945 -6.3847 0.7320 22 1 -0.3933 -0.8833 0.0004 23 1 1.7924 -0.5138 0.8901 24 1 3.5349 1.7702 -0.0006 25 1 1.5355 2.4771 -1.1922 26 1 2.5017 1.0932 -2.2239 27 1 3.2123 -2.5249 -4.3745 28 1 2.2919 -3.8242 -2.4970 29 1 0.7150 -4.4926 -1.2854 30 1 2.3365 -4.6056 -0.5600 31 1 -0.8031 -3.3466 1.0403 32 1 -1.3018 -4.7658 0.0888 33 1 -2.3964 -4.7577 2.3133 34 1 -0.7993 -4.7294 3.0991 35 1 -2.7708 -6.9459 3.4342 36 1 0.2439 -8.1003 1.9133 37 1 0.7424 -6.6815 2.8651 38 1 0.2401 -6.7175 -0.1454 39 1 1.8371 -6.6891 0.6404 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_12398898_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:15:39 Heat of formation + Delta-G solvation = -155.245643 kcal Electronic energy + Delta-G solvation = -22721.328670 eV Core-core repulsion = 19123.457786 eV Total energy + Delta-G solvation = -3597.870884 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.85853 -41.67082 -40.24148 -38.67150 -37.43166 -36.74245 -33.04256 -32.16213 -31.97961 -30.45074 -27.00404 -26.88270 -24.00483 -23.85385 -22.81052 -22.18993 -21.03160 -19.45795 -18.63627 -18.30963 -18.20405 -17.62551 -17.27187 -16.62032 -16.47994 -16.05869 -15.92632 -15.60033 -15.49744 -15.18852 -14.94152 -14.74882 -14.22420 -14.11595 -13.81493 -13.61463 -13.36953 -13.31354 -13.22006 -12.73633 -12.60673 -12.27728 -12.15150 -12.02078 -11.80672 -11.72254 -11.28490 -11.21769 -11.06525 -10.81640 -10.31369 -9.25339 -4.83491 -0.12851 0.01939 1.35617 1.65505 1.86241 1.95557 2.30410 3.05421 3.11399 3.36347 3.44594 3.46489 3.54273 3.60977 3.80667 3.86496 3.90565 3.95662 3.97628 4.08542 4.17078 4.18692 4.22808 4.29570 4.32446 4.41449 4.45877 4.60035 4.63590 4.80241 4.88624 4.89882 4.92556 4.93701 5.00091 5.01728 5.03057 5.16323 5.27578 5.49512 6.10926 6.55666 6.63784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.073 4.073 3 Si 0.746 3.254 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.070 3.930 7 F -0.136 7.136 8 C -0.107 4.107 9 C -0.176 4.176 10 C 0.135 3.865 11 O -0.307 6.307 12 C 0.061 3.939 13 C -0.087 4.087 14 H 0.086 0.914 15 C -0.111 4.111 16 C -0.152 4.152 17 C 0.103 3.897 18 H 0.054 0.946 19 O -0.569 6.569 20 C -0.112 4.112 21 C -0.110 4.110 22 H 0.366 0.634 23 H 0.080 0.920 24 H -0.248 1.248 25 H -0.251 1.251 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.379 0.621 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 -2.405 1.478 3.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.181 4.181 3 Si 0.644 3.356 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.050 3.950 7 F -0.115 7.115 8 C -0.126 4.126 9 C -0.195 4.195 10 C 0.089 3.911 11 O -0.221 6.221 12 C -0.014 4.014 13 C -0.106 4.106 14 H 0.105 0.895 15 C -0.148 4.148 16 C -0.190 4.190 17 C 0.044 3.956 18 H 0.072 0.928 19 O -0.375 6.375 20 C -0.149 4.149 21 C -0.148 4.148 22 H 0.213 0.787 23 H 0.098 0.902 24 H -0.172 1.172 25 H -0.176 1.176 26 H 0.158 0.842 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.227 0.773 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.053 -1.336 1.254 1.834 hybrid contribution -0.391 -1.482 -1.256 1.982 sum -0.338 -2.819 -0.002 2.839 Atomic orbital electron populations 1.86735 1.16732 1.33218 1.97069 1.25175 0.84920 1.13324 0.94720 0.93048 0.78604 0.76375 0.87557 1.19514 1.03653 0.90791 0.97772 1.20882 0.99874 1.00438 0.92431 1.17464 1.01626 0.89739 0.86124 1.91527 1.84826 1.78316 1.56796 1.21026 0.99709 0.91912 0.99958 1.21162 1.03863 1.00863 0.93597 1.18730 0.94479 0.90468 0.87446 1.86038 1.77383 1.20052 1.38628 1.23001 1.01226 0.77672 0.99515 1.21240 0.97134 0.95043 0.97171 0.89545 1.21516 0.94244 1.01246 0.97833 1.22276 1.01688 0.95937 0.99103 1.21840 0.94650 0.91588 0.87535 0.92756 1.86519 1.30667 1.74522 1.45776 1.21436 0.94011 1.01218 0.98245 1.21475 1.01775 0.93142 0.98371 0.78661 0.90245 1.17229 1.17634 0.84172 0.83889 0.84005 0.91514 0.91511 0.90690 0.91719 0.91404 0.90867 0.77318 0.90783 0.90893 0.91237 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.77 12.65 -35.23 -0.45 -1.22 16 2 C -0.07 -0.07 2.33 36.00 0.08 0.02 16 3 Si 0.75 0.16 30.40 -169.99 -5.17 -5.01 16 4 C -0.12 -0.22 5.28 -104.48 -0.55 -0.78 16 5 C -0.12 -0.33 8.64 -39.53 -0.34 -0.67 16 6 C 0.07 0.19 7.30 -39.42 -0.29 -0.09 16 7 F -0.14 -0.53 17.27 2.25 0.04 -0.49 16 8 C -0.11 -0.08 10.02 -39.53 -0.40 -0.48 16 9 C -0.18 0.02 9.04 -39.44 -0.36 -0.34 16 10 C 0.13 0.11 6.62 -39.24 -0.26 -0.15 16 11 O -0.31 0.13 8.57 -19.57 -0.17 -0.04 16 12 C 0.06 -0.15 4.12 37.16 0.15 0.00 16 13 C -0.09 0.23 2.43 -90.62 -0.22 0.01 16 14 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 15 C -0.11 0.27 5.10 -26.73 -0.14 0.14 16 16 C -0.15 0.30 5.55 -26.73 -0.15 0.15 16 17 C 0.10 -0.12 3.47 -26.73 -0.09 -0.21 16 18 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 19 O -0.57 -0.22 13.32 -35.23 -0.47 -0.69 16 20 C -0.11 0.14 5.57 -26.73 -0.15 -0.01 16 21 C -0.11 0.32 5.20 -26.73 -0.14 0.18 16 22 H 0.37 -0.23 8.60 45.56 0.39 0.17 16 23 H 0.08 -0.01 7.83 -51.93 -0.41 -0.41 16 24 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 25 H -0.25 -0.68 6.81 56.52 0.38 -0.29 16 26 H 0.14 0.36 4.93 -52.49 -0.26 0.10 16 27 H 0.14 -0.17 8.06 -52.49 -0.42 -0.60 16 28 H 0.14 -0.36 6.30 -52.48 -0.33 -0.69 16 29 H 0.07 -0.22 7.67 -51.93 -0.40 -0.62 16 30 H 0.07 -0.21 7.65 -51.93 -0.40 -0.61 16 31 H 0.07 -0.16 7.82 -51.93 -0.41 -0.56 16 32 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 33 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 34 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.38 -1.28 9.08 45.56 0.41 -0.86 16 36 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 37 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.07 -0.23 8.14 -51.93 -0.42 -0.66 16 39 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 LS Contribution 318.00 15.07 4.79 4.79 Total: 0.00 -5.21 318.00 -9.09 -14.31 By element: Atomic # 1 Polarization: -4.60 SS G_CDS: -4.83 Total: -9.43 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.84 Total: -2.22 kcal Atomic # 8 Polarization: -0.86 SS G_CDS: -1.08 Total: -1.95 kcal Atomic # 9 Polarization: -0.53 SS G_CDS: 0.04 Total: -0.49 kcal Atomic # 14 Polarization: 0.16 SS G_CDS: -5.17 Total: -5.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -5.21 -9.09 -14.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_12398898_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.936 kcal (2) G-P(sol) polarization free energy of solvation -5.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds