Wall clock time and date at job start Mon Mar 8 2021 08:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86301 * 109.46789 * 2 1 4 4 C 1.50697 * 109.47049 * 239.99786 * 2 1 3 5 5 C 1.38127 * 120.01540 * 104.97508 * 4 2 1 6 6 C 1.38477 * 120.03296 * 180.02562 * 5 4 2 7 7 F 1.35094 * 119.97101 * 180.02562 * 6 5 4 8 8 C 1.38435 * 120.05772 * 0.02562 * 6 5 4 9 9 C 1.38176 * 120.02760 * 359.74021 * 8 6 5 10 10 C 1.38680 * 119.97379 * 0.50876 * 9 8 6 11 11 O 1.35945 * 120.03540 * 179.77100 * 10 9 8 12 12 C 1.42901 * 116.99627 * 359.72231 * 11 10 9 13 13 C 1.52998 * 109.47046 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46903 * 305.00059 * 13 12 11 15 15 C 1.52997 * 109.47449 * 64.99681 * 13 12 11 16 16 C 1.52998 * 109.47449 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47067 * 300.00474 * 16 15 13 18 18 H 1.09000 * 109.47181 * 299.99734 * 17 16 15 19 19 O 1.42902 * 109.47124 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47373 * 59.99480 * 17 16 15 21 21 C 1.52998 * 109.47449 * 300.00286 * 20 17 16 22 22 H 0.96694 * 114.00082 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46957 * 119.99401 * 2 1 3 24 24 H 1.48503 * 109.99527 * 180.02562 * 3 2 1 25 25 H 1.48501 * 109.99995 * 301.31337 * 3 2 1 26 26 H 1.07998 * 119.98448 * 0.05015 * 5 4 2 27 27 H 1.07998 * 119.98757 * 179.97438 * 8 6 5 28 28 H 1.08006 * 120.01041 * 180.27777 * 9 8 6 29 29 H 1.08999 * 109.47144 * 300.00194 * 12 11 10 30 30 H 1.08998 * 109.47043 * 59.99793 * 12 11 10 31 31 H 1.08999 * 109.47516 * 300.00723 * 15 13 12 32 32 H 1.09000 * 109.46760 * 60.00290 * 15 13 12 33 33 H 1.08996 * 109.47008 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.46903 * 60.00378 * 16 15 13 35 35 H 0.96699 * 114.00051 * 59.99429 * 19 17 16 36 36 H 1.08999 * 109.47516 * 179.97438 * 20 17 16 37 37 H 1.09003 * 109.46559 * 60.00492 * 20 17 16 38 38 H 1.09000 * 109.46903 * 299.99622 * 21 20 17 39 39 H 1.08996 * 109.47008 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.4531 0.0159 -2.2831 6 6 2.9143 -0.6365 -3.4141 7 9 3.4247 0.0751 -4.4427 8 6 2.8527 -2.0173 -3.4917 9 6 2.3357 -2.7467 -2.4381 10 6 1.8687 -2.0942 -1.3069 11 8 1.3556 -2.8103 -0.2715 12 6 1.3225 -4.2313 -0.4189 13 6 0.7161 -4.8603 0.8370 14 1 1.2707 -4.5272 1.7142 15 6 -0.7472 -4.4326 0.9661 16 6 -1.3538 -5.0622 2.2216 17 6 -1.2754 -6.5865 2.1167 18 1 -1.8298 -6.9193 1.2392 19 8 -1.8425 -7.1746 3.2891 20 6 0.1879 -7.0143 1.9876 21 6 0.7945 -6.3847 0.7320 22 1 -0.3933 -0.8833 0.0004 23 1 1.7924 -0.5138 0.8901 24 1 3.5349 1.7702 -0.0006 25 1 1.5355 2.4771 -1.1922 26 1 2.5017 1.0932 -2.2239 27 1 3.2123 -2.5249 -4.3745 28 1 2.2919 -3.8242 -2.4970 29 1 0.7150 -4.4926 -1.2854 30 1 2.3365 -4.6056 -0.5600 31 1 -0.8031 -3.3466 1.0403 32 1 -1.3018 -4.7658 0.0888 33 1 -2.3964 -4.7577 2.3133 34 1 -0.7993 -4.7294 3.0991 35 1 -2.7708 -6.9459 3.4342 36 1 0.2439 -8.1003 1.9133 37 1 0.7424 -6.6815 2.8651 38 1 0.2401 -6.7175 -0.1454 39 1 1.8371 -6.6891 0.6404 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_12398898_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:15:39 Heat of formation + Delta-G solvation = -151.792986 kcal Electronic energy + Delta-G solvation = -22721.178952 eV Core-core repulsion = 19123.457786 eV Total energy + Delta-G solvation = -3597.721166 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.06293 -41.64901 -40.12037 -38.64715 -37.49632 -36.65368 -33.08245 -32.07087 -31.79833 -30.47242 -26.98644 -26.81321 -23.92640 -23.75400 -22.86590 -22.07960 -20.85401 -19.44400 -18.70966 -18.33649 -18.17779 -17.69212 -17.17780 -16.72672 -16.43445 -16.08662 -15.90571 -15.53422 -15.47558 -15.27335 -14.82300 -14.66916 -14.22333 -14.06714 -13.87886 -13.56614 -13.27002 -13.20592 -13.15251 -12.73425 -12.53037 -12.31904 -12.11278 -11.91763 -11.63911 -11.55020 -11.31195 -11.12609 -11.07382 -10.69828 -10.37642 -9.30682 -4.89280 -0.18942 -0.06400 1.29754 1.58024 1.88052 1.93503 2.24353 3.02475 3.23268 3.34991 3.42231 3.65670 3.69581 3.75413 3.81632 3.90364 3.93927 4.07558 4.09918 4.18493 4.29395 4.36637 4.37584 4.42882 4.50529 4.52160 4.54302 4.62347 4.82183 4.85357 4.89071 4.96487 5.00361 5.07844 5.11404 5.17200 5.20495 5.32536 5.42639 5.47319 6.16664 6.59152 6.86282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.076 4.076 3 Si 0.806 3.194 4 C -0.132 4.132 5 C -0.136 4.136 6 C 0.044 3.956 7 F -0.149 7.149 8 C -0.104 4.104 9 C -0.171 4.171 10 C 0.137 3.863 11 O -0.310 6.310 12 C 0.056 3.944 13 C -0.082 4.082 14 H 0.076 0.924 15 C -0.109 4.109 16 C -0.147 4.147 17 C 0.099 3.901 18 H 0.062 0.938 19 O -0.592 6.592 20 C -0.114 4.114 21 C -0.104 4.104 22 H 0.375 0.625 23 H 0.092 0.908 24 H -0.269 1.269 25 H -0.291 1.291 26 H 0.131 0.869 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -3.765 1.339 4.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.185 4.185 3 Si 0.708 3.292 4 C -0.133 4.133 5 C -0.154 4.154 6 C 0.025 3.975 7 F -0.128 7.128 8 C -0.122 4.122 9 C -0.189 4.189 10 C 0.091 3.909 11 O -0.224 6.224 12 C -0.019 4.019 13 C -0.101 4.101 14 H 0.095 0.905 15 C -0.146 4.146 16 C -0.185 4.185 17 C 0.041 3.959 18 H 0.080 0.920 19 O -0.401 6.401 20 C -0.152 4.152 21 C -0.141 4.141 22 H 0.224 0.776 23 H 0.110 0.890 24 H -0.195 1.195 25 H -0.219 1.219 26 H 0.149 0.851 27 H 0.181 0.819 28 H 0.189 0.811 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.208 -2.711 1.136 2.947 hybrid contribution -0.346 -1.114 -1.199 1.672 sum -0.554 -3.824 -0.062 3.865 Atomic orbital electron populations 1.86696 1.16984 1.34162 1.97088 1.25236 0.84793 1.13554 0.94915 0.92450 0.76324 0.74889 0.85510 1.19639 1.04168 0.91683 0.97825 1.20937 1.00962 1.00275 0.93246 1.17745 1.02956 0.90757 0.86054 1.91484 1.85205 1.78794 1.57332 1.21298 0.98996 0.91003 1.00951 1.21490 1.02555 1.02245 0.92627 1.18790 0.93946 0.90193 0.87965 1.86044 1.76980 1.21181 1.38195 1.23182 1.02270 0.76451 0.99948 1.21171 0.96815 0.95207 0.96879 0.90536 1.21504 0.94458 1.00979 0.97692 1.22214 1.01910 0.95444 0.98945 1.21939 0.94700 0.91951 0.87316 0.92029 1.86482 1.32024 1.75041 1.46526 1.21467 0.94074 1.00944 0.98700 1.21433 1.02289 0.92643 0.97762 0.77630 0.89027 1.19537 1.21860 0.85148 0.81874 0.81061 0.90071 0.90314 0.90997 0.91018 0.90850 0.92121 0.75770 0.91419 0.92113 0.90199 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.60 12.65 -148.98 -1.89 -3.48 16 2 C -0.08 -0.16 2.33 71.23 0.17 0.01 16 3 Si 0.81 1.38 30.40 68.60 2.09 3.46 16 4 C -0.13 -0.56 5.28 -19.77 -0.10 -0.66 16 5 C -0.14 -0.95 8.64 22.30 0.19 -0.76 16 6 C 0.04 0.28 7.30 22.37 0.16 0.45 16 7 F -0.15 -1.40 17.27 44.97 0.78 -0.62 16 8 C -0.10 -0.08 10.02 22.30 0.22 0.14 16 9 C -0.17 0.34 9.04 22.36 0.20 0.54 16 10 C 0.14 0.10 6.62 22.49 0.15 0.25 16 11 O -0.31 0.71 8.57 -92.93 -0.80 -0.09 16 12 C 0.06 -0.40 4.12 71.98 0.30 -0.10 16 13 C -0.08 0.54 2.43 -10.80 -0.03 0.51 16 14 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 15 C -0.11 0.65 5.10 30.59 0.16 0.80 16 16 C -0.15 0.62 5.55 30.59 0.17 0.79 16 17 C 0.10 -0.25 3.47 30.59 0.11 -0.14 16 18 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 19 O -0.59 -0.58 13.32 -148.98 -1.98 -2.56 16 20 C -0.11 0.31 5.57 30.59 0.17 0.48 16 21 C -0.10 0.75 5.20 30.59 0.16 0.91 16 22 H 0.37 -0.59 8.60 -74.06 -0.64 -1.23 16 23 H 0.09 -0.05 7.83 -2.39 -0.02 -0.07 16 24 H -0.27 -1.33 7.11 99.48 0.71 -0.62 16 25 H -0.29 -2.34 6.81 99.48 0.68 -1.67 16 26 H 0.13 1.02 4.93 -2.91 -0.01 1.00 16 27 H 0.16 -0.64 8.06 -2.91 -0.02 -0.66 16 28 H 0.17 -1.43 6.30 -2.91 -0.02 -1.45 16 29 H 0.08 -0.77 7.67 -2.39 -0.02 -0.79 16 30 H 0.08 -0.71 7.65 -2.39 -0.02 -0.73 16 31 H 0.07 -0.36 7.82 -2.39 -0.02 -0.38 16 32 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.39 -2.59 9.08 -74.06 -0.67 -3.27 16 36 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 Total: 0.00 -13.22 318.00 -0.01 -13.23 By element: Atomic # 1 Polarization: -12.91 SS G_CDS: -0.23 Total: -13.14 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 2.02 Total: 3.20 kcal Atomic # 8 Polarization: -1.47 SS G_CDS: -4.67 Total: -6.14 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.78 Total: -0.62 kcal Atomic # 14 Polarization: 1.38 SS G_CDS: 2.09 Total: 3.46 kcal Total: -13.22 -0.01 -13.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_12398898_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.561 kcal (2) G-P(sol) polarization free energy of solvation -13.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds