Wall clock time and date at job start Mon Mar 8 2021 09:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38123 * 119.97081 * 2 1 4 4 C 1.38755 * 119.94186 * 180.27654 * 3 2 1 5 5 O 1.35905 * 120.05630 * 179.72939 * 4 3 2 6 6 C 1.42900 * 116.99641 * 0.02562 * 5 4 3 7 7 C 1.53003 * 109.46789 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47178 * 55.00347 * 7 6 5 9 9 C 1.53007 * 109.46855 * 174.99898 * 7 6 5 10 10 C 1.53003 * 109.46855 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47425 * 300.00361 * 10 9 7 12 12 H 1.09001 * 109.47014 * 300.00188 * 11 10 9 13 13 O 1.42902 * 109.47127 * 179.97438 * 11 10 9 14 14 C 1.52998 * 109.47342 * 59.99805 * 11 10 9 15 15 C 1.52995 * 109.47425 * 295.00260 * 7 6 5 16 16 C 1.38715 * 119.89035 * 359.75006 * 4 3 2 17 17 C 1.50698 * 120.02833 * 179.97438 * 16 4 3 18 18 O 1.42899 * 109.47415 * 75.02030 * 17 16 4 19 19 Si 1.86294 * 109.47104 * 195.02110 * 17 16 4 20 20 C 1.38162 * 119.94128 * 359.97438 * 16 4 3 21 21 C 1.38247 * 120.05751 * 359.97438 * 20 16 4 22 22 H 1.09002 * 109.46914 * 270.24975 * 1 2 3 23 23 H 1.09003 * 109.47592 * 30.25053 * 1 2 3 24 24 H 1.09005 * 109.47037 * 150.24961 * 1 2 3 25 25 H 1.08005 * 120.03130 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47764 * 300.00190 * 6 5 4 27 27 H 1.09002 * 109.47305 * 60.00243 * 6 5 4 28 28 H 1.08989 * 109.47323 * 299.99945 * 9 7 6 29 29 H 1.08999 * 109.47158 * 60.00689 * 9 7 6 30 30 H 1.09001 * 109.47178 * 60.00449 * 10 9 7 31 31 H 1.08996 * 109.47120 * 180.02562 * 10 9 7 32 32 H 0.96702 * 113.99808 * 179.97438 * 13 11 10 33 33 H 1.09001 * 109.46754 * 60.00223 * 14 11 10 34 34 H 1.08996 * 109.47383 * 179.97438 * 14 11 10 35 35 H 1.08999 * 109.47221 * 299.99698 * 15 7 6 36 36 H 1.08996 * 109.47190 * 59.99776 * 15 7 6 37 37 H 1.09001 * 109.46984 * 315.02374 * 17 16 4 38 38 H 0.96699 * 114.00360 * 180.02562 * 18 17 16 39 39 H 1.48500 * 110.00180 * 178.67866 * 19 17 16 40 40 H 1.48497 * 109.99919 * 299.99921 * 19 17 16 41 41 H 1.07998 * 119.97180 * 180.02562 * 20 16 4 42 42 H 1.08002 * 119.94131 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5845 1.1958 -0.0058 5 8 4.2658 2.3718 -0.0114 6 6 3.4892 3.5714 -0.0103 7 6 4.4230 4.7834 -0.0165 8 1 5.1081 4.7099 -0.8611 9 6 3.5953 6.0642 -0.1411 10 6 4.5291 7.2762 -0.1479 11 6 5.3293 7.3108 1.1556 12 1 4.6445 7.3845 2.0005 13 8 6.2020 8.4425 1.1489 14 6 6.1569 6.0300 1.2803 15 6 5.2227 4.8177 1.2874 16 6 4.2752 -0.0071 -0.0063 17 6 5.7821 -0.0115 -0.0132 18 8 6.2655 0.3382 1.2853 19 14 6.3961 -1.7107 -0.4676 20 6 3.5803 -1.2013 -0.0006 21 6 2.1978 -1.1979 0.0063 22 1 -0.3633 0.0045 1.0277 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3633 -0.8923 -0.5100 25 1 1.6570 2.1319 0.0004 26 1 2.8563 3.5953 -0.8974 27 1 2.8645 3.5990 0.8825 28 1 3.0257 6.0397 -1.0700 29 1 2.9102 6.1377 0.7035 30 1 5.2139 7.2025 -0.9928 31 1 3.9395 8.1886 -0.2363 32 1 6.7412 8.5280 1.9471 33 1 6.8417 5.9563 0.4354 34 1 6.7274 6.0549 2.2087 35 1 4.5376 4.8913 2.1320 36 1 5.8122 3.9053 1.3761 37 1 6.1442 0.7128 -0.7428 38 1 7.2298 0.3556 1.3545 39 1 7.8805 -1.7201 -0.5090 40 1 5.9092 -2.7074 0.5197 41 1 4.1175 -2.1381 -0.0006 42 1 1.6565 -2.1325 0.0112 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_12861324_16737256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:17:54 Heat of formation + Delta-G solvation = -112.306147 kcal Electronic energy + Delta-G solvation = -22374.214598 eV Core-core repulsion = 19092.122067 eV Total energy + Delta-G solvation = -3282.092531 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.155 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41561 -40.15315 -38.62963 -37.66270 -36.67280 -34.01518 -32.04824 -31.87030 -30.67715 -29.26840 -26.79766 -25.05886 -23.87449 -23.53172 -22.21702 -21.74306 -20.85183 -18.57679 -18.42142 -18.18869 -17.36964 -17.02813 -16.76501 -16.37973 -15.57467 -15.51006 -15.29096 -15.10918 -14.78862 -14.62359 -14.52701 -14.24495 -13.87024 -13.67670 -13.36103 -13.25624 -13.22801 -13.01292 -12.82068 -12.53786 -12.46510 -12.17059 -11.86527 -11.82856 -11.66730 -11.55809 -11.51977 -11.14202 -10.73198 -10.32452 -9.73824 -9.04038 -4.92449 0.27746 0.52427 1.34656 1.62184 1.97597 2.19078 2.68210 3.14194 3.48399 3.57723 3.66519 3.70776 3.78560 3.88335 4.03750 4.05920 4.09015 4.13538 4.25245 4.29979 4.30398 4.34608 4.40815 4.45049 4.50643 4.54426 4.62712 4.66955 4.73576 4.75918 4.87704 4.91738 5.00743 5.05467 5.10916 5.12111 5.15881 5.29128 5.34202 5.38807 5.44597 5.64290 5.84199 6.45854 6.58790 6.69108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.039 4.039 3 C -0.212 4.212 4 C 0.160 3.840 5 O -0.302 6.302 6 C 0.062 3.938 7 C -0.086 4.086 8 H 0.084 0.916 9 C -0.110 4.110 10 C -0.111 4.111 11 C 0.103 3.897 12 H 0.054 0.946 13 O -0.569 6.569 14 C -0.152 4.152 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.061 4.061 18 O -0.532 6.532 19 Si 0.683 3.317 20 C -0.075 4.075 21 C -0.155 4.155 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.129 0.871 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.379 0.621 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.375 0.625 39 H -0.262 1.262 40 H -0.255 1.255 41 H 0.133 0.867 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 -0.439 -1.501 2.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.039 4.039 3 C -0.231 4.231 4 C 0.114 3.886 5 O -0.215 6.215 6 C -0.013 4.013 7 C -0.105 4.105 8 H 0.102 0.898 9 C -0.148 4.148 10 C -0.148 4.148 11 C 0.044 3.956 12 H 0.072 0.928 13 O -0.375 6.375 14 C -0.189 4.189 15 C -0.148 4.148 16 C -0.114 4.114 17 C -0.171 4.171 18 O -0.339 6.339 19 Si 0.585 3.415 20 C -0.092 4.092 21 C -0.174 4.174 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.147 0.853 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.226 0.774 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.223 0.777 39 H -0.187 1.187 40 H -0.180 1.180 41 H 0.150 0.850 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.093 -0.958 -1.723 2.875 hybrid contribution 0.757 0.572 1.414 1.702 sum -1.336 -0.386 -0.310 1.425 Atomic orbital electron populations 1.20858 0.90738 1.03193 1.02737 1.19772 0.96185 0.92428 0.95557 1.21136 0.92694 0.99082 1.10207 1.18703 0.90020 0.85552 0.94316 1.86102 1.35462 1.11969 1.87946 1.22906 0.94186 0.82739 1.01503 1.21211 0.97260 0.92124 0.99874 0.89754 1.21478 0.97659 0.92747 1.02873 1.21435 0.98093 0.98223 0.97086 1.21849 0.90919 0.84759 0.98081 0.92760 1.86515 1.57821 1.47531 1.45650 1.22285 0.98825 0.95100 1.02725 1.21511 0.98295 0.98375 0.96626 1.18532 0.93535 0.90855 1.08499 1.24580 0.93881 1.10685 0.87967 1.86619 1.26046 1.91140 1.30053 0.95121 0.80448 0.76353 0.89615 1.20925 0.94557 0.96609 0.97138 1.20895 0.93631 0.97840 1.04986 0.90744 0.91349 0.90977 0.85328 0.91801 0.91935 0.90766 0.91310 0.90937 0.90841 0.77399 0.90997 0.91590 0.91888 0.90507 0.90850 0.77737 1.18712 1.18012 0.84970 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.01 36.00 0.36 0.49 16 2 C -0.04 -0.05 5.88 -104.65 -0.62 -0.66 16 3 C -0.21 -0.36 8.69 -39.43 -0.34 -0.70 16 4 C 0.16 0.48 6.66 -39.21 -0.26 0.21 16 5 O -0.30 -0.77 9.00 -19.44 -0.18 -0.95 16 6 C 0.06 -0.01 4.12 37.16 0.15 0.15 16 7 C -0.09 0.05 2.43 -90.62 -0.22 -0.17 16 8 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 9 C -0.11 0.16 5.20 -26.73 -0.14 0.02 16 10 C -0.11 0.02 5.57 -26.73 -0.15 -0.13 16 11 C 0.10 0.01 3.47 -26.73 -0.09 -0.08 16 12 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 13 O -0.57 -0.76 13.32 -35.23 -0.47 -1.23 16 14 C -0.15 0.05 5.55 -26.70 -0.15 -0.10 16 15 C -0.11 0.01 5.10 -26.71 -0.14 -0.13 16 16 C -0.11 -0.32 5.30 -104.47 -0.55 -0.88 16 17 C -0.06 -0.10 2.37 36.00 0.09 -0.02 16 18 O -0.53 -1.50 12.86 -35.23 -0.45 -1.95 16 19 Si 0.68 0.07 30.20 -169.99 -5.13 -5.07 16 20 C -0.07 -0.13 8.66 -39.61 -0.34 -0.48 16 21 C -0.16 -0.18 9.70 -39.56 -0.38 -0.56 16 22 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 23 H 0.07 -0.12 8.09 -51.93 -0.42 -0.54 16 24 H 0.07 -0.14 8.09 -51.93 -0.42 -0.56 16 25 H 0.13 -0.01 6.30 -52.48 -0.33 -0.34 16 26 H 0.06 -0.07 7.66 -51.93 -0.40 -0.47 16 27 H 0.06 -0.03 7.66 -51.93 -0.40 -0.43 16 28 H 0.07 -0.16 8.14 -51.94 -0.42 -0.59 16 29 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 30 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 32 H 0.38 -0.93 9.08 45.56 0.41 -0.51 16 33 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 34 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.08 0.10 7.82 -51.93 -0.41 -0.30 16 37 H 0.07 0.07 7.83 -51.93 -0.41 -0.33 16 38 H 0.38 -0.43 8.74 45.56 0.40 -0.03 16 39 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 40 H -0.26 -0.67 6.75 56.52 0.38 -0.29 16 41 H 0.13 0.05 4.90 -52.49 -0.26 -0.21 16 42 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 LS Contribution 333.59 15.07 5.03 5.03 Total: 0.00 -6.40 333.59 -10.08 -16.48 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -6.09 Total: -9.29 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.79 Total: -3.03 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -1.10 Total: -4.13 kcal Atomic # 14 Polarization: 0.07 SS G_CDS: -5.13 Total: -5.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -6.40 -10.08 -16.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_12861324_16737256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.828 kcal (2) G-P(sol) polarization free energy of solvation -6.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds