Wall clock time and date at job start Mon Mar 8 2021 09:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38123 * 119.97081 * 2 1 4 4 C 1.38755 * 119.94186 * 180.27654 * 3 2 1 5 5 O 1.35905 * 120.05630 * 179.72939 * 4 3 2 6 6 C 1.42900 * 116.99641 * 0.02562 * 5 4 3 7 7 C 1.53003 * 109.46789 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47178 * 55.00347 * 7 6 5 9 9 C 1.53007 * 109.46855 * 174.99898 * 7 6 5 10 10 C 1.53003 * 109.46855 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47425 * 300.00361 * 10 9 7 12 12 H 1.09001 * 109.47014 * 300.00188 * 11 10 9 13 13 O 1.42902 * 109.47127 * 179.97438 * 11 10 9 14 14 C 1.52998 * 109.47342 * 59.99805 * 11 10 9 15 15 C 1.52995 * 109.47425 * 295.00260 * 7 6 5 16 16 C 1.38715 * 119.89035 * 359.75006 * 4 3 2 17 17 C 1.50698 * 120.02833 * 179.97438 * 16 4 3 18 18 O 1.42899 * 109.47415 * 75.02030 * 17 16 4 19 19 Si 1.86294 * 109.47104 * 195.02110 * 17 16 4 20 20 C 1.38162 * 119.94128 * 359.97438 * 16 4 3 21 21 C 1.38247 * 120.05751 * 359.97438 * 20 16 4 22 22 H 1.09002 * 109.46914 * 270.24975 * 1 2 3 23 23 H 1.09003 * 109.47592 * 30.25053 * 1 2 3 24 24 H 1.09005 * 109.47037 * 150.24961 * 1 2 3 25 25 H 1.08005 * 120.03130 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47764 * 300.00190 * 6 5 4 27 27 H 1.09002 * 109.47305 * 60.00243 * 6 5 4 28 28 H 1.08989 * 109.47323 * 299.99945 * 9 7 6 29 29 H 1.08999 * 109.47158 * 60.00689 * 9 7 6 30 30 H 1.09001 * 109.47178 * 60.00449 * 10 9 7 31 31 H 1.08996 * 109.47120 * 180.02562 * 10 9 7 32 32 H 0.96702 * 113.99808 * 179.97438 * 13 11 10 33 33 H 1.09001 * 109.46754 * 60.00223 * 14 11 10 34 34 H 1.08996 * 109.47383 * 179.97438 * 14 11 10 35 35 H 1.08999 * 109.47221 * 299.99698 * 15 7 6 36 36 H 1.08996 * 109.47190 * 59.99776 * 15 7 6 37 37 H 1.09001 * 109.46984 * 315.02374 * 17 16 4 38 38 H 0.96699 * 114.00360 * 180.02562 * 18 17 16 39 39 H 1.48500 * 110.00180 * 178.67866 * 19 17 16 40 40 H 1.48497 * 109.99919 * 299.99921 * 19 17 16 41 41 H 1.07998 * 119.97180 * 180.02562 * 20 16 4 42 42 H 1.08002 * 119.94131 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5845 1.1958 -0.0058 5 8 4.2658 2.3718 -0.0114 6 6 3.4892 3.5714 -0.0103 7 6 4.4230 4.7834 -0.0165 8 1 5.1081 4.7099 -0.8611 9 6 3.5953 6.0642 -0.1411 10 6 4.5291 7.2762 -0.1479 11 6 5.3293 7.3108 1.1556 12 1 4.6445 7.3845 2.0005 13 8 6.2020 8.4425 1.1489 14 6 6.1569 6.0300 1.2803 15 6 5.2227 4.8177 1.2874 16 6 4.2752 -0.0071 -0.0063 17 6 5.7821 -0.0115 -0.0132 18 8 6.2655 0.3382 1.2853 19 14 6.3961 -1.7107 -0.4676 20 6 3.5803 -1.2013 -0.0006 21 6 2.1978 -1.1979 0.0063 22 1 -0.3633 0.0045 1.0277 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3633 -0.8923 -0.5100 25 1 1.6570 2.1319 0.0004 26 1 2.8563 3.5953 -0.8974 27 1 2.8645 3.5990 0.8825 28 1 3.0257 6.0397 -1.0700 29 1 2.9102 6.1377 0.7035 30 1 5.2139 7.2025 -0.9928 31 1 3.9395 8.1886 -0.2363 32 1 6.7412 8.5280 1.9471 33 1 6.8417 5.9563 0.4354 34 1 6.7274 6.0549 2.2087 35 1 4.5376 4.8913 2.1320 36 1 5.8122 3.9053 1.3761 37 1 6.1442 0.7128 -0.7428 38 1 7.2298 0.3556 1.3545 39 1 7.8805 -1.7201 -0.5090 40 1 5.9092 -2.7074 0.5197 41 1 4.1175 -2.1381 -0.0006 42 1 1.6565 -2.1325 0.0112 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_12861324_16737256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:17:53 Heat of formation + Delta-G solvation = -109.464544 kcal Electronic energy + Delta-G solvation = -22374.091377 eV Core-core repulsion = 19092.122067 eV Total energy + Delta-G solvation = -3281.969310 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47694 -40.15758 -38.69095 -37.78771 -36.70253 -34.05964 -32.06862 -31.85228 -30.73596 -29.27272 -26.80613 -25.10006 -23.86898 -23.56648 -22.24490 -21.79175 -20.83666 -18.63485 -18.56694 -18.21574 -17.43961 -17.05998 -16.82294 -16.40062 -15.62816 -15.52381 -15.35505 -15.13824 -14.80276 -14.68867 -14.48205 -14.24082 -13.97709 -13.70871 -13.36556 -13.23515 -13.22725 -12.98494 -12.85113 -12.54783 -12.47644 -12.16598 -11.87581 -11.85851 -11.79195 -11.55970 -11.53683 -11.11926 -10.74946 -10.43211 -9.81165 -9.13047 -4.95507 0.19378 0.43122 1.28639 1.56490 1.89304 2.15839 2.60776 3.19924 3.44838 3.60939 3.66723 3.71673 3.75498 3.86953 4.02098 4.06412 4.10881 4.14019 4.25351 4.26873 4.33342 4.35464 4.44559 4.45967 4.48785 4.56776 4.60801 4.75074 4.80106 4.81503 4.88846 4.95044 5.03550 5.05529 5.11495 5.15226 5.21372 5.26960 5.31250 5.37048 5.40371 5.59533 5.80979 6.40651 6.59839 6.82090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.046 4.046 3 C -0.220 4.220 4 C 0.141 3.859 5 O -0.317 6.317 6 C 0.060 3.940 7 C -0.081 4.081 8 H 0.075 0.925 9 C -0.103 4.103 10 C -0.113 4.113 11 C 0.101 3.899 12 H 0.062 0.938 13 O -0.589 6.589 14 C -0.146 4.146 15 C -0.106 4.106 16 C -0.136 4.136 17 C -0.075 4.075 18 O -0.555 6.555 19 Si 0.769 3.231 20 C -0.084 4.084 21 C -0.162 4.162 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.143 0.857 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.393 0.607 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.389 0.611 39 H -0.286 1.286 40 H -0.289 1.289 41 H 0.142 0.858 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 -0.540 -1.669 3.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.046 4.046 3 C -0.238 4.238 4 C 0.096 3.904 5 O -0.231 6.231 6 C -0.015 4.015 7 C -0.100 4.100 8 H 0.094 0.906 9 C -0.140 4.140 10 C -0.150 4.150 11 C 0.043 3.957 12 H 0.080 0.920 13 O -0.398 6.398 14 C -0.183 4.183 15 C -0.144 4.144 16 C -0.137 4.137 17 C -0.183 4.183 18 O -0.364 6.364 19 Si 0.673 3.327 20 C -0.102 4.102 21 C -0.180 4.180 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.100 0.900 25 H 0.160 0.840 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.242 0.758 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.238 0.762 39 H -0.213 1.213 40 H -0.216 1.216 41 H 0.159 0.841 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.099 -1.034 -1.892 3.775 hybrid contribution 1.084 0.631 1.506 1.960 sum -2.015 -0.403 -0.386 2.091 Atomic orbital electron populations 1.20899 0.89075 1.04112 1.03260 1.20103 0.97480 0.92215 0.94828 1.21366 0.92385 1.00057 1.10012 1.18948 0.90728 0.85755 0.95018 1.86080 1.36377 1.12523 1.88088 1.23026 0.94250 0.81983 1.02235 1.21163 0.97143 0.92523 0.99132 0.90636 1.21433 0.97314 0.91425 1.03851 1.21460 0.98119 0.98760 0.96670 1.21905 0.90924 0.84440 0.98444 0.92033 1.86479 1.58345 1.47986 1.46967 1.22219 0.98606 0.94939 1.02578 1.21449 0.98212 0.97607 0.97128 1.18816 0.94215 0.91390 1.09283 1.24873 0.93730 1.12202 0.87538 1.86571 1.27502 1.91480 1.30866 0.94106 0.77554 0.73254 0.87760 1.21114 0.95138 0.96670 0.97232 1.21205 0.93571 0.98820 1.04435 0.90291 0.90568 0.89980 0.83954 0.90645 0.91498 0.89672 0.90428 0.91923 0.90969 0.75775 0.92038 0.90992 0.91578 0.92229 0.90712 0.76190 1.21337 1.21587 0.84090 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.39 10.01 71.23 0.71 1.10 16 2 C -0.05 -0.09 5.88 -19.88 -0.12 -0.20 16 3 C -0.22 -0.75 8.69 22.37 0.19 -0.56 16 4 C 0.14 0.96 6.66 22.51 0.15 1.11 16 5 O -0.32 -1.95 9.00 -92.48 -0.83 -2.79 16 6 C 0.06 0.00 4.12 71.98 0.30 0.30 16 7 C -0.08 0.06 2.43 -10.79 -0.03 0.04 16 8 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 9 C -0.10 0.34 5.20 30.60 0.16 0.50 16 10 C -0.11 0.01 5.57 30.59 0.17 0.18 16 11 C 0.10 0.04 3.47 30.59 0.11 0.15 16 12 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 13 O -0.59 -1.72 13.32 -148.98 -1.98 -3.70 16 14 C -0.15 0.00 5.55 30.61 0.17 0.17 16 15 C -0.11 -0.06 5.10 30.61 0.16 0.09 16 16 C -0.14 -0.90 5.30 -19.77 -0.10 -1.01 16 17 C -0.08 -0.34 2.37 71.24 0.17 -0.17 16 18 O -0.55 -3.88 12.86 -148.98 -1.92 -5.80 16 19 Si 0.77 0.53 30.20 68.60 2.07 2.60 16 20 C -0.08 -0.34 8.66 22.25 0.19 -0.14 16 21 C -0.16 -0.34 9.70 22.28 0.22 -0.12 16 22 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 23 H 0.08 -0.37 8.09 -2.39 -0.02 -0.38 16 24 H 0.08 -0.43 8.09 -2.38 -0.02 -0.45 16 25 H 0.14 -0.07 6.30 -2.91 -0.02 -0.09 16 26 H 0.08 -0.19 7.66 -2.39 -0.02 -0.21 16 27 H 0.07 -0.06 7.66 -2.39 -0.02 -0.08 16 28 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 31 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.39 -1.86 9.08 -74.06 -0.67 -2.53 16 33 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.06 0.26 7.82 -2.39 -0.02 0.24 16 37 H 0.07 0.25 7.83 -2.39 -0.02 0.23 16 38 H 0.39 -0.38 8.74 -74.06 -0.65 -1.02 16 39 H -0.29 -1.29 7.11 99.48 0.71 -0.58 16 40 H -0.29 -1.75 6.75 99.48 0.67 -1.08 16 41 H 0.14 0.16 4.90 -2.91 -0.01 0.14 16 42 H 0.15 -0.37 8.06 -2.91 -0.02 -0.40 16 Total: 0.00 -15.08 333.59 -0.52 -15.60 By element: Atomic # 1 Polarization: -7.04 SS G_CDS: -0.30 Total: -7.35 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 2.45 Total: 1.43 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -4.73 Total: -12.28 kcal Atomic # 14 Polarization: 0.53 SS G_CDS: 2.07 Total: 2.60 kcal Total: -15.08 -0.52 -15.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_12861324_16737256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.865 kcal (2) G-P(sol) polarization free energy of solvation -15.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds