Wall clock time and date at job start Mon Mar 8 2021 10:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86306 * 109.47328 * 2 1 4 4 C 1.50707 * 109.46760 * 240.00277 * 2 1 3 5 5 C 1.38254 * 119.93677 * 299.99846 * 4 2 1 6 6 C 1.38263 * 120.06083 * 180.02562 * 5 4 2 7 7 Cl 1.73604 * 120.02796 * 179.97438 * 6 5 4 8 8 C 1.38779 * 119.94201 * 0.02562 * 6 5 4 9 9 O 1.35945 * 120.06972 * 180.02562 * 8 6 5 10 10 C 1.42898 * 117.00206 * 89.99438 * 9 8 6 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.47017 * 55.00070 * 11 10 9 13 13 C 1.52994 * 109.47404 * 174.99993 * 11 10 9 14 14 C 1.52997 * 109.47404 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47369 * 300.00003 * 14 13 11 16 16 H 1.08998 * 109.47238 * 300.00562 * 15 14 13 17 17 O 1.42903 * 109.47575 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.46654 * 59.99819 * 15 14 13 19 19 C 1.52997 * 109.47380 * 300.00174 * 18 15 14 20 20 C 1.38798 * 119.86968 * 0.27231 * 8 6 5 21 21 Cl 1.73603 * 120.03043 * 179.70314 * 20 8 6 22 22 C 1.38257 * 119.93241 * 120.02118 * 4 2 1 23 23 H 0.96699 * 114.00530 * 59.99738 * 1 2 3 24 24 H 1.08997 * 109.47386 * 120.00453 * 2 1 3 25 25 H 1.48502 * 110.00017 * 298.68631 * 3 2 1 26 26 H 1.48501 * 109.99873 * 60.00247 * 3 2 1 27 27 H 1.07999 * 119.96544 * 0.04569 * 5 4 2 28 28 H 1.09002 * 109.47259 * 300.00659 * 10 9 8 29 29 H 1.09001 * 109.47074 * 60.00681 * 10 9 8 30 30 H 1.09000 * 109.47476 * 300.00087 * 13 11 10 31 31 H 1.09008 * 109.46970 * 60.00049 * 13 11 10 32 32 H 1.08995 * 109.47630 * 59.99990 * 14 13 11 33 33 H 1.09002 * 109.47754 * 180.02562 * 14 13 11 34 34 H 0.96698 * 114.00211 * 180.02562 * 17 15 14 35 35 H 1.08998 * 109.47136 * 60.00111 * 18 15 14 36 36 H 1.09000 * 109.46811 * 179.97438 * 18 15 14 37 37 H 1.09008 * 109.47017 * 300.00189 * 19 18 15 38 38 H 1.08998 * 109.47192 * 180.02562 * 19 18 15 39 39 H 1.07997 * 119.97506 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 1.5964 -2.0340 -1.4481 6 6 2.0562 -2.6884 -2.5759 7 17 1.6358 -4.3507 -2.8479 8 6 2.8550 -2.0156 -3.4898 9 8 3.3081 -2.6563 -4.5999 10 6 2.4852 -2.5937 -5.7665 11 6 3.1540 -3.3671 -6.9046 12 1 3.3664 -4.3848 -6.5766 13 6 2.2179 -3.4060 -8.1140 14 6 2.8865 -4.1800 -9.2519 15 6 4.1938 -3.4869 -9.6410 16 1 3.9818 -2.4693 -9.9692 17 8 4.8186 -4.2101 -10.7034 18 6 5.1300 -3.4480 -8.4315 19 6 4.4614 -2.6740 -7.2936 20 6 3.1946 -0.6886 -3.2657 21 17 4.1999 0.1548 -4.4023 22 6 2.7263 -0.0372 -2.1395 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5139 0.8899 25 1 1.5878 2.4586 -1.2242 26 1 1.5616 2.4679 1.2085 27 1 0.9748 -2.5572 -0.7365 28 1 1.5128 -3.0358 -5.5494 29 1 2.3532 -1.5530 -6.0625 30 1 1.2867 -3.9002 -7.8370 31 1 2.0055 -2.3884 -8.4420 32 1 3.0985 -5.1975 -8.9238 33 1 2.2197 -4.2074 -10.1137 34 1 5.6548 -3.8268 -11.0017 35 1 5.3420 -4.4656 -8.1033 36 1 6.0615 -2.9546 -8.7088 37 1 4.2494 -1.6564 -7.6218 38 1 5.1286 -2.6460 -6.4321 39 1 2.9870 0.9965 -1.9667 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_12913562_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:12 Heat of formation + Delta-G solvation = -113.382642 kcal Electronic energy + Delta-G solvation = -24379.451424 eV Core-core repulsion = 20533.250246 eV Total energy + Delta-G solvation = -3846.201178 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.062 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51159 -40.25183 -39.14188 -37.88256 -37.85344 -37.12610 -36.62119 -32.56275 -31.98146 -31.81657 -31.23708 -27.14595 -25.95756 -24.39261 -23.77677 -22.83338 -22.28863 -20.87911 -19.41656 -18.63192 -18.20459 -17.97047 -17.00881 -16.89993 -16.54051 -16.20500 -16.01381 -15.65031 -15.53524 -15.36482 -14.91966 -14.69964 -14.50501 -14.14507 -13.79519 -13.58724 -13.48662 -13.21713 -13.16850 -13.14815 -12.64219 -12.49504 -12.23020 -12.17355 -12.15853 -12.11374 -11.86469 -11.67181 -11.59172 -11.18648 -10.98644 -10.74843 -10.70360 -9.98604 -9.84627 -4.94598 -0.42089 -0.28255 0.66274 1.06901 1.27164 1.57028 1.89668 1.94477 2.40195 3.22630 3.27699 3.39915 3.61226 3.64694 3.72007 3.78100 3.85824 3.90730 4.08688 4.12035 4.18464 4.26386 4.34953 4.36994 4.48138 4.50129 4.52030 4.55044 4.62540 4.73356 4.82843 4.94711 4.97627 5.05585 5.09683 5.14823 5.17720 5.18845 5.34392 5.44018 6.16508 6.43761 6.85337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.074 4.074 3 Si 0.754 3.246 4 C -0.093 4.093 5 C -0.067 4.067 6 C -0.057 4.057 7 Cl -0.047 7.047 8 C 0.112 3.888 9 O -0.325 6.325 10 C 0.072 3.928 11 C -0.080 4.080 12 H 0.074 0.926 13 C -0.104 4.104 14 C -0.112 4.112 15 C 0.102 3.898 16 H 0.062 0.938 17 O -0.591 6.591 18 C -0.146 4.146 19 C -0.104 4.104 20 C -0.050 4.050 21 Cl -0.039 7.039 22 C -0.089 4.089 23 H 0.389 0.611 24 H 0.139 0.861 25 H -0.276 1.276 26 H -0.297 1.297 27 H 0.155 0.845 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.393 0.607 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 3.334 0.541 3.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.183 4.183 3 Si 0.658 3.342 4 C -0.094 4.094 5 C -0.086 4.086 6 C -0.084 4.084 7 Cl -0.018 7.018 8 C 0.066 3.934 9 O -0.242 6.242 10 C -0.002 4.002 11 C -0.099 4.099 12 H 0.093 0.907 13 C -0.141 4.141 14 C -0.150 4.150 15 C 0.043 3.957 16 H 0.080 0.920 17 O -0.399 6.399 18 C -0.184 4.184 19 C -0.141 4.141 20 C -0.078 4.078 21 Cl -0.010 7.010 22 C -0.107 4.107 23 H 0.238 0.762 24 H 0.157 0.843 25 H -0.202 1.202 26 H -0.224 1.224 27 H 0.173 0.827 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.349 3.291 0.982 3.452 hybrid contribution -0.636 0.002 -0.692 0.940 sum -0.287 3.294 0.289 3.319 Atomic orbital electron populations 1.86609 1.17812 1.80272 1.50316 1.25193 0.83850 1.11486 0.97818 0.94140 0.90536 0.72197 0.77316 1.20272 0.98090 0.93804 0.97239 1.21101 0.98127 0.94039 0.95289 1.21361 1.00926 0.87994 0.98124 1.98409 1.91921 1.15211 1.96229 1.18204 0.96153 0.89392 0.89651 1.86070 1.46915 1.72924 1.18304 1.22949 0.93317 1.00764 0.83133 1.21138 0.95882 0.99842 0.92997 0.90719 1.21429 0.98049 1.01596 0.93045 1.21449 0.95422 0.99597 0.98500 1.21904 0.92745 0.94864 0.86170 0.91960 1.86478 1.42074 1.57083 1.54259 1.22217 0.99100 1.01157 0.95944 1.21426 0.95920 0.98929 0.97833 1.21189 0.99818 0.91640 0.95123 1.98409 1.66693 1.76325 1.59564 1.21147 0.96718 1.01161 0.91643 0.76162 0.84350 1.20189 1.22421 0.82699 0.92235 0.91853 0.90256 0.90436 0.92062 0.91188 0.75749 0.92163 0.90755 0.91317 0.91588 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.04 12.77 -148.98 -1.90 -0.86 16 2 C -0.07 0.37 2.82 71.24 0.20 0.57 16 3 Si 0.75 -3.91 29.78 68.60 2.04 -1.86 16 4 C -0.09 0.32 5.39 -19.85 -0.11 0.22 16 5 C -0.07 0.09 9.39 22.28 0.21 0.30 16 6 C -0.06 -0.09 6.33 22.41 0.14 0.05 16 7 Cl -0.05 -0.13 28.50 -2.72 -0.08 -0.21 16 8 C 0.11 0.25 5.71 22.53 0.13 0.38 16 9 O -0.33 -0.98 8.51 -92.93 -0.79 -1.77 16 10 C 0.07 -0.03 5.44 71.98 0.39 0.36 16 11 C -0.08 0.09 2.43 -10.80 -0.03 0.06 16 12 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 13 C -0.10 0.28 5.20 30.59 0.16 0.44 16 14 C -0.11 -0.03 5.57 30.59 0.17 0.14 16 15 C 0.10 0.01 3.47 30.60 0.11 0.11 16 16 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 17 O -0.59 -1.64 13.32 -148.98 -1.98 -3.62 16 18 C -0.15 0.13 5.54 30.60 0.17 0.30 16 19 C -0.10 0.11 5.10 30.59 0.16 0.26 16 20 C -0.05 -0.01 6.33 22.41 0.14 0.13 16 21 Cl -0.04 -0.01 28.50 -2.72 -0.08 -0.09 16 22 C -0.09 0.28 8.45 22.28 0.19 0.47 16 23 H 0.39 -2.89 8.70 -74.06 -0.64 -3.53 16 24 H 0.14 -0.98 7.96 -2.39 -0.02 -1.00 16 25 H -0.28 0.47 7.11 99.48 0.71 1.17 16 26 H -0.30 -0.82 7.11 99.48 0.71 -0.11 16 27 H 0.16 -0.43 8.06 -2.91 -0.02 -0.45 16 28 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.08 -0.33 8.14 -2.38 -0.02 -0.35 16 32 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.39 -1.98 9.08 -74.06 -0.67 -2.65 16 35 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 38 H 0.07 0.09 7.82 -2.39 -0.02 0.07 16 39 H 0.16 -1.11 4.87 -2.91 -0.01 -1.13 16 Total: 0.00 -12.30 348.84 -0.95 -13.25 By element: Atomic # 1 Polarization: -8.43 SS G_CDS: -0.19 Total: -8.62 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 2.03 Total: 3.79 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: -4.68 Total: -6.26 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.04 Total: -1.86 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.16 Total: -0.30 kcal Total: -12.30 -0.95 -13.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_12913562_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.131 kcal (2) G-P(sol) polarization free energy of solvation -12.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds