Wall clock time and date at job start Mon Mar 8 2021 07:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 C 1.52999 * 109.47046 * 240.00840 * 2 1 3 5 5 Si 1.86295 * 109.47531 * 120.00448 * 2 1 3 6 6 C 1.86301 * 109.46959 * 300.00265 * 5 2 1 7 7 C 1.86296 * 109.47268 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47026 * 60.00013 * 5 2 1 9 9 C 1.42896 * 113.99897 * 179.97438 * 8 5 2 10 10 C 1.53006 * 109.47265 * 180.02562 * 9 8 5 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 8 12 12 O 1.42905 * 109.46728 * 180.02562 * 11 10 9 13 13 C 1.35896 * 117.00039 * 179.97438 * 12 11 10 14 14 C 1.38719 * 120.05269 * 179.72057 * 13 12 11 15 15 C 1.38176 * 119.97212 * 179.74418 * 14 13 12 16 16 C 1.50700 * 119.96545 * 180.27668 * 15 14 13 17 17 O 1.42902 * 109.46945 * 300.28023 * 16 15 14 18 18 Si 1.86294 * 109.47073 * 180.28041 * 16 15 14 19 19 H 1.48498 * 109.47580 * 59.99441 * 18 16 15 20 20 H 1.48498 * 109.47346 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47087 * 299.99942 * 18 16 15 22 22 C 1.38221 * 120.06504 * 0.55580 * 15 14 13 23 23 C 1.38408 * 120.09878 * 359.70078 * 22 15 14 24 24 Cl 1.73605 * 119.98079 * 180.02562 * 23 22 15 25 25 C 1.38238 * 120.03151 * 0.02562 * 23 22 15 26 26 H 1.09007 * 109.47216 * 299.98865 * 1 2 3 27 27 H 1.09000 * 109.47794 * 59.99750 * 1 2 3 28 28 H 1.09005 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46930 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47788 * 300.00643 * 3 2 1 31 31 H 1.09010 * 109.46787 * 60.00605 * 3 2 1 32 32 H 1.09005 * 109.47172 * 299.99514 * 4 2 1 33 33 H 1.09000 * 109.47305 * 59.99111 * 4 2 1 34 34 H 1.08995 * 109.47215 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.46738 * 179.97438 * 6 5 2 36 36 H 1.09005 * 109.46861 * 299.99560 * 6 5 2 37 37 H 1.08995 * 109.47384 * 59.99925 * 6 5 2 38 38 H 1.08994 * 109.47376 * 300.00249 * 7 5 2 39 39 H 1.09005 * 109.47331 * 59.99963 * 7 5 2 40 40 H 1.09000 * 109.47532 * 179.97438 * 7 5 2 41 41 H 1.09000 * 109.47075 * 60.00299 * 9 8 5 42 42 H 1.08996 * 109.47405 * 300.00475 * 9 8 5 43 43 H 1.09000 * 109.46866 * 60.00127 * 10 9 8 44 44 H 1.09001 * 109.46611 * 300.00244 * 10 9 8 45 45 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 46 46 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 47 47 H 1.07996 * 120.01048 * 0.02562 * 14 13 12 48 48 H 1.08995 * 109.46898 * 60.27633 * 16 15 14 49 49 H 0.96709 * 113.99803 * 299.99690 * 17 16 15 50 50 H 1.08003 * 119.94978 * 179.72085 * 22 15 14 51 51 H 1.07996 * 120.03371 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 14 2.1511 -0.8783 1.5210 6 6 1.5301 -0.0002 3.0422 7 6 4.0141 -0.8776 1.5213 8 8 1.6075 -2.4161 1.5209 9 6 2.0297 -3.1818 2.6510 10 6 1.4649 -4.5999 2.5461 11 6 1.9164 -5.4196 3.7565 12 8 1.3894 -6.7443 3.6581 13 6 1.6992 -7.6076 4.6608 14 6 1.2162 -8.9077 4.6321 15 6 1.5366 -9.7857 5.6498 16 6 1.0170 -11.1999 5.6153 17 8 -0.4118 -11.1822 5.6043 18 14 1.6152 -12.1181 7.1219 19 1 1.1192 -11.4382 8.3454 20 1 1.1037 -13.5118 7.0876 21 1 3.1001 -12.1364 7.1333 22 6 2.3284 -9.3665 6.7024 23 6 2.8074 -8.0684 6.7366 24 17 3.8022 -7.5454 8.0597 25 6 2.4940 -7.1883 5.7177 26 1 -0.3634 0.5137 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9564 -0.8898 31 1 1.6766 1.9563 0.8901 32 1 1.6767 -1.7488 -1.2495 33 1 1.6765 -0.2072 -2.1393 34 1 3.1299 -0.7207 -1.2496 35 1 1.8931 -0.5144 3.9321 36 1 1.8934 1.0275 3.0423 37 1 0.4401 -0.0003 3.0423 38 1 4.3778 -1.3910 0.6313 39 1 4.3770 0.1503 1.5216 40 1 4.3775 -1.3911 2.4114 41 1 1.6656 -2.7121 3.5647 42 1 3.1185 -3.2256 2.6740 43 1 1.8293 -5.0695 1.6324 44 1 0.3760 -4.5564 2.5229 45 1 1.5516 -4.9500 4.6700 46 1 3.0053 -5.4632 3.7801 47 1 0.5939 -9.2348 3.8123 48 1 1.3811 -11.6989 4.7173 49 1 -0.8058 -10.7522 6.3758 50 1 2.5740 -10.0530 7.4991 51 1 2.8681 -6.1755 5.7441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_13429476_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:43 Heat of formation + Delta-G solvation = -163.830287 kcal Electronic energy + Delta-G solvation = -27427.406249 eV Core-core repulsion = 23475.761471 eV Total energy + Delta-G solvation = -3951.644778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48274 -39.48441 -38.29886 -37.93434 -36.99370 -36.88064 -33.74622 -32.48374 -31.10738 -29.49762 -29.14924 -27.91123 -27.43295 -27.43141 -26.42132 -23.90235 -23.09394 -22.10751 -20.47053 -19.42793 -18.11100 -18.03381 -17.62498 -17.37471 -17.14905 -16.43487 -16.16084 -16.05856 -15.79793 -15.67668 -15.34466 -14.92242 -14.84647 -14.76179 -14.58962 -14.50864 -14.05093 -13.83476 -13.51617 -13.47976 -13.31171 -13.29395 -13.25848 -12.99312 -12.97542 -12.90580 -12.57448 -12.52390 -12.42437 -12.24343 -12.14463 -11.93400 -11.88727 -11.76369 -11.74149 -11.70552 -11.48929 -11.40710 -10.58174 -10.43907 -10.12715 -9.95539 -9.39958 -0.07172 0.10621 0.97795 1.04848 1.28021 1.38790 1.46183 1.67461 1.84615 1.98331 2.02155 2.38851 2.41703 3.32172 3.45821 3.70868 3.73262 3.75488 3.89492 3.93222 4.07382 4.07593 4.10101 4.12609 4.13063 4.20851 4.26834 4.42668 4.44390 4.54898 4.60111 4.63309 4.65862 4.66452 4.76984 4.81490 4.89563 4.91723 4.95800 4.96036 5.05429 5.06481 5.06736 5.15510 5.16168 5.29717 5.35841 5.37116 5.38901 5.45897 5.48592 5.53932 6.20057 6.45381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.623 6.623 9 C 0.090 3.910 10 C -0.123 4.123 11 C 0.055 3.945 12 O -0.304 6.304 13 C 0.148 3.852 14 C -0.118 4.118 15 C -0.068 4.068 16 C -0.079 4.079 17 O -0.534 6.534 18 Si 0.945 3.055 19 H -0.248 1.248 20 H -0.250 1.250 21 H -0.247 1.247 22 C -0.156 4.156 23 C 0.011 3.989 24 Cl -0.060 7.060 25 C -0.199 4.199 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.145 0.855 48 H 0.125 0.875 49 H 0.378 0.622 50 H 0.133 0.867 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 1.234 0.718 1.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.420 2.580 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.014 3.986 10 C -0.161 4.161 11 C -0.020 4.020 12 O -0.217 6.217 13 C 0.102 3.898 14 C -0.137 4.137 15 C -0.069 4.069 16 C -0.190 4.190 17 O -0.339 6.339 18 Si 0.767 3.233 19 H -0.172 1.172 20 H -0.174 1.174 21 H -0.171 1.171 22 C -0.175 4.175 23 C -0.015 4.015 24 Cl -0.031 7.031 25 C -0.218 4.218 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.162 0.838 48 H 0.143 0.857 49 H 0.226 0.774 50 H 0.150 0.850 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.951 0.315 0.680 1.211 hybrid contribution 0.384 1.373 0.521 1.518 sum 1.335 1.688 1.202 2.465 Atomic orbital electron populations 1.21516 0.93773 1.02042 1.01818 1.25786 1.00728 1.02646 1.12699 1.21557 1.00772 0.94891 1.02178 1.21514 1.00599 1.00269 0.96767 0.76696 0.63005 0.53305 0.65032 1.27038 1.07069 1.09538 1.17696 1.27038 1.25035 1.04804 1.04466 1.85333 1.79309 1.46075 1.47484 1.21794 0.98129 0.91467 0.87233 1.21522 1.03480 0.93188 0.97883 1.22794 0.98799 0.80634 0.99778 1.86109 1.70689 1.21944 1.42947 1.18815 0.93647 0.90231 0.87140 1.20375 1.02438 0.90277 1.00566 1.20055 0.96717 0.96684 0.93437 1.25011 0.85260 0.95593 1.13127 1.86543 1.16622 1.81893 1.48870 0.85730 0.80888 0.80213 0.76437 1.17161 1.17354 1.17096 1.20848 1.01536 0.95101 1.00025 1.20511 0.96301 0.94018 0.90719 1.98405 1.67926 1.90612 1.46131 1.21154 1.04231 1.01275 0.95167 0.92698 0.92763 0.92132 0.92514 0.92465 0.92516 0.92130 0.92763 0.92702 0.91510 0.90655 0.90819 0.90817 0.90657 0.91508 0.92344 0.92350 0.89469 0.89470 0.91371 0.91378 0.83760 0.85731 0.77436 0.84959 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 7.85 37.16 0.29 0.32 16 2 C -0.37 0.23 0.53 -90.62 -0.05 0.18 16 3 C -0.14 0.12 7.85 37.16 0.29 0.41 16 4 C -0.13 0.03 7.85 37.16 0.29 0.32 16 5 Si 1.29 -2.03 8.45 -169.99 -1.44 -3.47 16 6 C -0.51 0.65 8.50 101.05 0.86 1.50 16 7 C -0.51 0.64 8.50 101.05 0.86 1.50 16 8 O -0.62 0.25 8.56 -35.23 -0.30 -0.05 16 9 C 0.09 -0.17 5.12 37.16 0.19 0.02 16 10 C -0.12 0.18 5.95 -26.73 -0.16 0.02 16 11 C 0.06 -0.09 4.74 37.16 0.18 0.08 16 12 O -0.30 -0.26 10.14 -19.41 -0.20 -0.46 16 13 C 0.15 0.13 6.69 -39.22 -0.26 -0.13 16 14 C -0.12 -0.08 9.55 -39.43 -0.38 -0.45 16 15 C -0.07 0.00 5.39 -104.65 -0.56 -0.57 16 16 C -0.08 0.09 2.82 36.01 0.10 0.19 16 17 O -0.53 0.23 12.76 -35.23 -0.45 -0.22 16 18 Si 0.95 -0.93 25.07 -169.99 -4.26 -5.19 16 19 H -0.25 0.18 7.11 56.52 0.40 0.58 16 20 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 21 H -0.25 0.09 7.11 56.52 0.40 0.49 16 22 C -0.16 -0.08 8.45 -39.53 -0.33 -0.41 16 23 C 0.01 0.01 6.32 -39.52 -0.25 -0.24 16 24 Cl -0.06 -0.06 28.95 -51.86 -1.50 -1.56 16 25 C -0.20 -0.07 8.82 -39.40 -0.35 -0.42 16 26 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 0.00 7.97 -51.93 -0.41 -0.41 16 29 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 30 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.06 -0.09 7.79 -51.92 -0.40 -0.49 16 32 H 0.06 0.00 7.97 -51.93 -0.41 -0.41 16 33 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 34 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 35 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 36 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 37 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 39 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 40 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 41 H 0.06 -0.20 7.21 -51.93 -0.37 -0.57 16 42 H 0.06 -0.19 7.21 -51.93 -0.37 -0.57 16 43 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 44 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 45 H 0.07 -0.19 7.66 -51.93 -0.40 -0.59 16 46 H 0.07 -0.19 7.66 -51.93 -0.40 -0.59 16 47 H 0.14 0.04 8.06 -52.49 -0.42 -0.39 16 48 H 0.12 -0.26 7.96 -51.93 -0.41 -0.67 16 49 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16 50 H 0.13 -0.04 4.87 -52.48 -0.26 -0.30 16 51 H 0.14 -0.19 6.30 -52.49 -0.33 -0.52 16 LS Contribution 419.74 15.07 6.33 6.33 Total: 0.00 -4.60 419.74 -9.42 -14.02 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: -8.32 Total: -11.73 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 0.72 Total: 2.33 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: -0.95 Total: -0.73 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: -5.70 Total: -8.66 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.50 Total: -1.56 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -4.60 -9.42 -14.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13429476_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.808 kcal (2) G-P(sol) polarization free energy of solvation -4.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds