Wall clock time and date at job start Mon Mar 8 2021 09:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86302 * 109.47369 * 2 1 4 4 C 1.86299 * 109.47275 * 239.99726 * 2 1 3 5 5 C 1.86808 * 109.47086 * 119.99846 * 2 1 3 6 6 C 1.38237 * 119.99967 * 89.99584 * 5 2 1 7 7 C 1.38228 * 119.99566 * 180.02562 * 6 5 2 8 8 C 1.38238 * 120.00524 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00046 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.46921 * 89.99735 * 9 8 7 11 11 C 1.35901 * 116.99472 * 179.97438 * 10 9 8 12 12 C 1.38728 * 120.04580 * 179.97438 * 11 10 9 13 13 C 1.38169 * 119.96865 * 180.02562 * 12 11 10 14 14 C 1.50696 * 119.96739 * 180.02562 * 13 12 11 15 15 O 1.42896 * 109.47108 * 299.98127 * 14 13 12 16 16 Si 1.86302 * 109.47394 * 179.97438 * 14 13 12 17 17 H 1.48490 * 109.47105 * 60.00071 * 16 14 13 18 18 H 1.48501 * 109.47246 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46988 * 299.99789 * 16 14 13 20 20 C 1.38225 * 120.06901 * 0.02562 * 13 12 11 21 21 C 1.38402 * 120.10028 * 0.02562 * 20 13 12 22 22 Cl 1.73603 * 119.98758 * 179.97438 * 21 20 13 23 23 C 1.38245 * 120.02953 * 359.97438 * 21 20 13 24 24 C 1.38236 * 119.99553 * 0.25168 * 8 7 6 25 25 C 1.38233 * 119.99966 * 359.49306 * 24 8 7 26 26 H 1.09001 * 109.47498 * 300.00315 * 1 2 3 27 27 H 1.09004 * 109.47378 * 60.00490 * 1 2 3 28 28 H 1.09006 * 109.47640 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47377 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46471 * 300.00066 * 3 2 1 31 31 H 1.09001 * 109.47067 * 59.99421 * 3 2 1 32 32 H 1.09009 * 109.46791 * 300.00161 * 4 2 1 33 33 H 1.08994 * 109.47123 * 59.99669 * 4 2 1 34 34 H 1.09002 * 109.47185 * 180.02562 * 4 2 1 35 35 H 1.07997 * 119.99864 * 0.02562 * 6 5 2 36 36 H 1.08004 * 119.99573 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47107 * 329.99812 * 9 8 7 38 38 H 1.08995 * 109.46531 * 209.99609 * 9 8 7 39 39 H 1.07998 * 120.01742 * 0.04790 * 12 11 10 40 40 H 1.09004 * 109.47212 * 59.97465 * 14 13 12 41 41 H 0.96706 * 114.00321 * 179.97438 * 15 14 13 42 42 H 1.07999 * 119.94944 * 180.02562 * 20 13 12 43 43 H 1.07998 * 120.03702 * 179.75052 * 23 21 20 44 44 H 1.08001 * 119.99832 * 179.72581 * 24 8 7 45 45 H 1.08004 * 119.99792 * 180.22795 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7159 -2.2432 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4057 -2.1840 3.7832 9 6 3.9069 -2.8946 5.0140 10 8 5.3359 -2.8947 5.0152 11 6 5.9518 -3.4999 6.0646 12 6 7.3371 -3.5374 6.1294 13 6 7.9617 -4.1536 7.1968 14 6 9.4664 -4.1938 7.2674 15 8 9.9788 -4.8809 6.1240 16 14 9.9919 -5.0868 8.8157 17 1 9.4603 -6.4731 8.7921 18 1 11.4747 -5.1259 8.8856 19 1 9.4595 -4.3726 10.0039 20 6 7.2077 -4.7331 8.1999 21 6 5.8255 -4.6983 8.1376 22 17 4.8815 -5.4277 9.3987 23 6 5.1963 -4.0829 7.0715 24 6 3.1699 -0.8224 3.8190 25 6 2.7146 -0.1698 2.6886 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1206 2.2703 0.8899 32 1 2.1206 -1.9060 -1.5210 33 1 2.1206 -0.3646 -2.4110 34 1 3.5740 -0.8787 -1.5208 35 1 2.5363 -2.7986 0.5825 36 1 3.3557 -3.9595 2.5934 37 1 3.5434 -3.9222 5.0136 38 1 3.5429 -2.3807 5.9037 39 1 7.9270 -3.0849 5.3461 40 1 9.8567 -3.1762 7.2847 41 1 10.9435 -4.9445 6.1029 42 1 7.6979 -5.2139 9.0335 43 1 4.1178 -4.0592 7.0207 44 1 3.3449 -0.2678 4.7290 45 1 2.5339 0.8947 2.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_13429476_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:48 Heat of formation + Delta-G solvation = -72.625365 kcal Electronic energy + Delta-G solvation = -24816.030659 eV Core-core repulsion = 21140.731310 eV Total energy + Delta-G solvation = -3675.299349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 350.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45822 -40.13686 -38.95539 -37.87650 -37.00994 -33.25127 -32.53818 -31.90569 -31.03862 -29.58617 -28.45841 -28.43039 -27.66536 -26.60740 -23.78461 -23.50536 -22.76248 -21.72441 -19.13653 -18.59646 -18.02516 -17.57172 -17.09308 -17.00962 -16.26883 -16.08559 -15.66737 -15.55736 -15.20260 -14.80068 -14.57787 -14.39226 -14.22616 -14.20902 -14.15722 -13.96139 -13.86470 -13.65553 -13.43559 -13.27790 -13.27502 -13.11772 -12.93021 -12.83071 -12.56521 -12.25660 -12.14178 -12.03919 -11.88968 -11.84729 -11.68270 -11.06212 -10.92174 -10.85494 -10.48668 -9.86165 -9.80088 -9.71471 -9.32120 0.00201 0.14003 0.17938 0.52749 1.03139 1.06047 1.38657 1.46006 1.68214 1.83125 1.84032 1.87800 2.21732 2.43429 2.52554 3.00214 3.23410 3.62006 3.73177 3.75796 3.81740 3.95766 4.04206 4.10036 4.19064 4.20956 4.23779 4.39334 4.48841 4.59573 4.65273 4.68665 4.69959 4.73790 4.74276 4.74919 4.75203 4.97769 5.00972 5.08596 5.13192 5.24765 5.37946 5.43493 5.44366 5.48630 5.52089 5.59648 5.60337 6.08822 6.26281 6.49699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.089 4.089 9 C 0.098 3.902 10 O -0.300 6.300 11 C 0.147 3.853 12 C -0.116 4.116 13 C -0.023 4.023 14 C -0.081 4.081 15 O -0.542 6.542 16 Si 0.942 3.058 17 H -0.244 1.244 18 H -0.253 1.253 19 H -0.247 1.247 20 C -0.155 4.155 21 C 0.013 3.987 22 Cl -0.059 7.059 23 C -0.200 4.200 24 C -0.106 4.106 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.383 0.617 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 1.963 -1.198 2.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.089 4.089 9 C 0.023 3.977 10 O -0.214 6.214 11 C 0.101 3.899 12 C -0.135 4.135 13 C -0.023 4.023 14 C -0.192 4.192 15 O -0.348 6.348 16 Si 0.763 3.237 17 H -0.167 1.167 18 H -0.177 1.177 19 H -0.170 1.170 20 C -0.174 4.174 21 C -0.014 4.014 22 Cl -0.030 7.030 23 C -0.219 4.219 24 C -0.124 4.124 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.102 0.898 41 H 0.231 0.769 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.098 1.477 -0.577 1.589 hybrid contribution 0.190 0.003 0.202 0.277 sum 0.091 1.480 -0.375 1.530 Atomic orbital electron populations 1.26126 1.20426 1.04593 1.04516 0.78181 0.66842 0.66131 0.63679 1.26136 1.06508 1.18534 1.04575 1.26137 1.06514 1.08051 1.15065 1.27492 1.02939 0.99516 1.10234 1.21083 0.97467 0.94676 0.97719 1.21158 0.98684 0.99942 0.92568 1.19419 1.01024 0.94190 0.94316 1.21710 0.78434 1.00645 0.96879 1.86215 1.21136 1.72570 1.41458 1.18808 0.91993 0.92384 0.86722 1.20334 0.91050 1.02547 0.99546 1.18918 0.93643 0.96155 0.93628 1.24712 0.92813 1.01683 0.99947 1.86507 1.26495 1.78463 1.43344 0.85797 0.80525 0.81252 0.76090 1.16703 1.17665 1.17007 1.20754 0.92117 1.03643 1.00839 1.20440 0.91410 0.98349 0.91227 1.98400 1.72350 1.81402 1.50881 1.21137 1.00951 1.04543 0.95277 1.21149 0.98774 0.93517 0.98943 1.21080 0.97521 0.99762 0.92601 0.91169 0.90997 0.91161 0.91020 0.90930 0.91168 0.91166 0.90927 0.91016 0.85845 0.86072 0.90775 0.90771 0.83985 0.89838 0.76894 0.84973 0.84061 0.86091 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.73 8.65 101.05 0.87 1.60 16 2 Si 1.06 -2.72 12.32 -169.99 -2.09 -4.81 16 3 C -0.45 0.82 8.53 101.05 0.86 1.68 16 4 C -0.45 0.80 8.53 101.05 0.86 1.66 16 5 C -0.36 0.07 4.59 -39.58 -0.18 -0.11 16 6 C -0.09 -0.03 9.29 -39.59 -0.37 -0.40 16 7 C -0.11 -0.12 9.70 -39.58 -0.38 -0.50 16 8 C -0.09 -0.12 5.51 -104.62 -0.58 -0.70 16 9 C 0.10 0.05 4.87 36.01 0.18 0.22 16 10 O -0.30 -0.77 10.12 -19.43 -0.20 -0.97 16 11 C 0.15 0.34 6.69 -39.22 -0.26 0.08 16 12 C -0.12 -0.26 9.55 -39.43 -0.38 -0.64 16 13 C -0.02 -0.04 5.42 -104.65 -0.57 -0.61 16 14 C -0.08 0.04 2.81 36.00 0.10 0.14 16 15 O -0.54 0.03 12.74 -35.23 -0.45 -0.42 16 16 Si 0.94 -0.53 25.07 -169.99 -4.26 -4.80 16 17 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 18 H -0.25 0.18 7.11 56.52 0.40 0.58 16 19 H -0.25 0.00 7.11 56.52 0.40 0.40 16 20 C -0.15 -0.31 8.45 -39.53 -0.33 -0.65 16 21 C 0.01 0.03 6.32 -39.52 -0.25 -0.22 16 22 Cl -0.06 -0.12 28.95 -51.86 -1.50 -1.62 16 23 C -0.20 -0.33 8.82 -39.40 -0.35 -0.68 16 24 C -0.11 -0.10 9.70 -39.58 -0.38 -0.49 16 25 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 32 H 0.07 -0.14 7.69 -51.92 -0.40 -0.53 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.12 -0.19 7.43 -52.49 -0.39 -0.58 16 36 H 0.12 -0.01 8.06 -52.48 -0.42 -0.44 16 37 H 0.07 -0.05 7.60 -51.93 -0.39 -0.44 16 38 H 0.07 -0.06 7.61 -51.93 -0.40 -0.46 16 39 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 40 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 41 H 0.38 -1.75 8.74 45.56 0.40 -1.35 16 42 H 0.13 0.14 4.87 -52.49 -0.26 -0.12 16 43 H 0.14 0.00 6.30 -52.49 -0.33 -0.33 16 44 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 45 H 0.12 -0.20 7.43 -52.48 -0.39 -0.59 16 LS Contribution 390.49 15.07 5.88 5.88 Total: 0.00 -5.88 390.49 -10.07 -15.95 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: -5.93 Total: -9.22 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.52 Total: 0.00 kcal Atomic # 8 Polarization: -0.74 SS G_CDS: -0.65 Total: -1.39 kcal Atomic # 14 Polarization: -3.25 SS G_CDS: -6.36 Total: -9.61 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.50 Total: -1.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -5.88 -10.07 -15.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13429476_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.673 kcal (2) G-P(sol) polarization free energy of solvation -5.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds