Wall clock time and date at job start Mon Mar 8 2021 09:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86302 * 109.47369 * 2 1 4 4 C 1.86299 * 109.47275 * 239.99726 * 2 1 3 5 5 C 1.86808 * 109.47086 * 119.99846 * 2 1 3 6 6 C 1.38237 * 119.99967 * 89.99584 * 5 2 1 7 7 C 1.38228 * 119.99566 * 180.02562 * 6 5 2 8 8 C 1.38238 * 120.00524 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00046 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.46921 * 89.99735 * 9 8 7 11 11 C 1.35901 * 116.99472 * 179.97438 * 10 9 8 12 12 C 1.38728 * 120.04580 * 179.97438 * 11 10 9 13 13 C 1.38169 * 119.96865 * 180.02562 * 12 11 10 14 14 C 1.50696 * 119.96739 * 180.02562 * 13 12 11 15 15 O 1.42896 * 109.47108 * 299.98127 * 14 13 12 16 16 Si 1.86302 * 109.47394 * 179.97438 * 14 13 12 17 17 H 1.48490 * 109.47105 * 60.00071 * 16 14 13 18 18 H 1.48501 * 109.47246 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46988 * 299.99789 * 16 14 13 20 20 C 1.38225 * 120.06901 * 0.02562 * 13 12 11 21 21 C 1.38402 * 120.10028 * 0.02562 * 20 13 12 22 22 Cl 1.73603 * 119.98758 * 179.97438 * 21 20 13 23 23 C 1.38245 * 120.02953 * 359.97438 * 21 20 13 24 24 C 1.38236 * 119.99553 * 0.25168 * 8 7 6 25 25 C 1.38233 * 119.99966 * 359.49306 * 24 8 7 26 26 H 1.09001 * 109.47498 * 300.00315 * 1 2 3 27 27 H 1.09004 * 109.47378 * 60.00490 * 1 2 3 28 28 H 1.09006 * 109.47640 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47377 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46471 * 300.00066 * 3 2 1 31 31 H 1.09001 * 109.47067 * 59.99421 * 3 2 1 32 32 H 1.09009 * 109.46791 * 300.00161 * 4 2 1 33 33 H 1.08994 * 109.47123 * 59.99669 * 4 2 1 34 34 H 1.09002 * 109.47185 * 180.02562 * 4 2 1 35 35 H 1.07997 * 119.99864 * 0.02562 * 6 5 2 36 36 H 1.08004 * 119.99573 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47107 * 329.99812 * 9 8 7 38 38 H 1.08995 * 109.46531 * 209.99609 * 9 8 7 39 39 H 1.07998 * 120.01742 * 0.04790 * 12 11 10 40 40 H 1.09004 * 109.47212 * 59.97465 * 14 13 12 41 41 H 0.96706 * 114.00321 * 179.97438 * 15 14 13 42 42 H 1.07999 * 119.94944 * 180.02562 * 20 13 12 43 43 H 1.07998 * 120.03702 * 179.75052 * 23 21 20 44 44 H 1.08001 * 119.99832 * 179.72581 * 24 8 7 45 45 H 1.08004 * 119.99792 * 180.22795 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7159 -2.2432 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4057 -2.1840 3.7832 9 6 3.9069 -2.8946 5.0140 10 8 5.3359 -2.8947 5.0152 11 6 5.9518 -3.4999 6.0646 12 6 7.3371 -3.5374 6.1294 13 6 7.9617 -4.1536 7.1968 14 6 9.4664 -4.1938 7.2674 15 8 9.9788 -4.8809 6.1240 16 14 9.9919 -5.0868 8.8157 17 1 9.4603 -6.4731 8.7921 18 1 11.4747 -5.1259 8.8856 19 1 9.4595 -4.3726 10.0039 20 6 7.2077 -4.7331 8.1999 21 6 5.8255 -4.6983 8.1376 22 17 4.8815 -5.4277 9.3987 23 6 5.1963 -4.0829 7.0715 24 6 3.1699 -0.8224 3.8190 25 6 2.7146 -0.1698 2.6886 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1206 2.2703 0.8899 32 1 2.1206 -1.9060 -1.5210 33 1 2.1206 -0.3646 -2.4110 34 1 3.5740 -0.8787 -1.5208 35 1 2.5363 -2.7986 0.5825 36 1 3.3557 -3.9595 2.5934 37 1 3.5434 -3.9222 5.0136 38 1 3.5429 -2.3807 5.9037 39 1 7.9270 -3.0849 5.3461 40 1 9.8567 -3.1762 7.2847 41 1 10.9435 -4.9445 6.1029 42 1 7.6979 -5.2139 9.0335 43 1 4.1178 -4.0592 7.0207 44 1 3.3449 -0.2678 4.7290 45 1 2.5339 0.8947 2.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13429476_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:47 Heat of formation + Delta-G solvation = -62.634003 kcal Electronic energy + Delta-G solvation = -24815.597401 eV Core-core repulsion = 21140.731310 eV Total energy + Delta-G solvation = -3674.866091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 350.102 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55215 -40.14522 -39.00706 -37.94562 -37.06121 -33.26133 -32.61808 -31.88943 -31.13250 -29.43109 -28.29201 -28.26793 -27.68890 -26.61251 -23.90477 -23.49487 -22.80197 -21.75249 -19.21716 -18.54981 -18.05384 -17.65093 -17.14443 -17.02914 -16.34594 -16.06447 -15.68869 -15.57613 -15.24410 -14.83837 -14.58046 -14.36256 -14.27589 -14.09885 -14.05087 -13.88565 -13.72947 -13.65740 -13.40592 -13.14192 -13.11462 -12.96634 -12.94371 -12.87931 -12.57642 -12.30763 -12.21106 -12.07030 -11.91434 -11.85428 -11.72782 -10.92512 -10.78117 -10.75591 -10.44497 -9.94441 -9.81450 -9.70103 -9.45229 -0.10935 0.04711 0.13910 0.51444 0.89496 1.10196 1.43315 1.48740 1.83376 1.87793 1.96564 2.02731 2.24772 2.32952 2.66824 2.99787 3.26482 3.63460 3.70528 3.75606 3.78283 3.88142 4.02097 4.11069 4.13838 4.21913 4.26542 4.39317 4.52726 4.54867 4.70527 4.84939 4.84989 4.88769 4.88909 4.89574 4.90154 4.91066 4.98100 4.99284 5.13754 5.15330 5.34329 5.39234 5.55942 5.58907 5.59505 5.68176 5.70958 6.11135 6.17144 6.79470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.104 4.104 9 C 0.096 3.904 10 O -0.314 6.314 11 C 0.140 3.860 12 C -0.126 4.126 13 C -0.028 4.028 14 C -0.080 4.080 15 O -0.560 6.560 16 Si 0.969 3.031 17 H -0.270 1.270 18 H -0.246 1.246 19 H -0.255 1.255 20 C -0.165 4.165 21 C 0.004 3.996 22 Cl -0.060 7.060 23 C -0.200 4.200 24 C -0.121 4.121 25 C -0.103 4.103 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.402 0.598 42 H 0.138 0.862 43 H 0.155 0.845 44 H 0.129 0.871 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 2.518 -1.613 3.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.122 4.122 7 C -0.140 4.140 8 C -0.104 4.104 9 C 0.022 3.978 10 O -0.228 6.228 11 C 0.094 3.906 12 C -0.145 4.145 13 C -0.029 4.029 14 C -0.190 4.190 15 O -0.369 6.369 16 Si 0.793 3.207 17 H -0.195 1.195 18 H -0.170 1.170 19 H -0.180 1.180 20 C -0.184 4.184 21 C -0.023 4.023 22 Cl -0.031 7.031 23 C -0.220 4.220 24 C -0.139 4.139 25 C -0.121 4.121 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.253 0.747 42 H 0.155 0.845 43 H 0.173 0.827 44 H 0.147 0.853 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.038 2.030 -0.983 2.256 hybrid contribution 0.148 -0.182 0.313 0.391 sum 0.187 1.849 -0.670 1.975 Atomic orbital electron populations 1.26278 1.21471 1.04485 1.04615 0.77161 0.65227 0.64598 0.61538 1.26279 1.06374 1.19390 1.04909 1.26291 1.06367 1.08509 1.15859 1.28073 1.02296 0.99572 1.11236 1.21392 0.97361 0.95252 0.98156 1.21387 0.99167 1.00485 0.92988 1.19588 1.01515 0.94581 0.94740 1.21829 0.77530 1.01304 0.97151 1.86192 1.22231 1.72698 1.41679 1.18918 0.92211 0.92585 0.86883 1.20479 0.91228 1.02913 0.99901 1.19194 0.94975 0.95547 0.93185 1.24738 0.91480 1.03012 0.99752 1.86459 1.28448 1.78603 1.43426 0.85413 0.80455 0.79300 0.75557 1.19513 1.16965 1.17954 1.20930 0.92283 1.03902 1.01292 1.20568 0.91633 0.98671 0.91457 1.98395 1.72365 1.81442 1.50925 1.21258 1.01652 1.04168 0.94888 1.21391 0.99098 0.93679 0.99719 1.21403 0.97338 1.00787 0.92595 0.91345 0.90637 0.91393 0.91378 0.90621 0.90860 0.90936 0.90616 0.91401 0.84290 0.85528 0.89919 0.89655 0.83783 0.87525 0.74704 0.84493 0.82750 0.85305 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.73 8.65 113.37 0.98 2.71 16 2 Si 1.13 -6.38 12.32 68.60 0.85 -5.53 16 3 C -0.46 1.96 8.53 113.37 0.97 2.93 16 4 C -0.46 1.86 8.53 113.37 0.97 2.83 16 5 C -0.37 0.15 4.59 22.27 0.10 0.25 16 6 C -0.10 -0.11 9.29 22.27 0.21 0.10 16 7 C -0.12 -0.37 9.70 22.27 0.22 -0.15 16 8 C -0.10 -0.36 5.51 -19.86 -0.11 -0.47 16 9 C 0.10 0.16 4.87 71.24 0.35 0.50 16 10 O -0.31 -1.88 10.12 -92.43 -0.94 -2.81 16 11 C 0.14 0.76 6.69 22.50 0.15 0.91 16 12 C -0.13 -0.65 9.55 22.37 0.21 -0.43 16 13 C -0.03 -0.11 5.42 -19.89 -0.11 -0.22 16 14 C -0.08 0.10 2.81 71.23 0.20 0.30 16 15 O -0.56 0.25 12.74 -148.98 -1.90 -1.65 16 16 Si 0.97 -1.10 25.07 68.60 1.72 0.62 16 17 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 18 H -0.25 0.57 7.11 99.48 0.71 1.27 16 19 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 20 C -0.17 -0.78 8.45 22.31 0.19 -0.59 16 21 C 0.00 0.02 6.32 22.31 0.14 0.16 16 22 Cl -0.06 -0.27 28.95 -2.72 -0.08 -0.35 16 23 C -0.20 -0.78 8.82 22.39 0.20 -0.58 16 24 C -0.12 -0.31 9.70 22.27 0.22 -0.09 16 25 C -0.10 -0.07 9.29 22.27 0.21 0.13 16 26 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 27 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 28 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 29 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 31 H 0.07 -0.35 7.69 -2.39 -0.02 -0.36 16 32 H 0.07 -0.32 7.69 -2.38 -0.02 -0.34 16 33 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 35 H 0.14 -0.44 7.43 -2.91 -0.02 -0.46 16 36 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.08 -0.06 7.60 -2.39 -0.02 -0.07 16 38 H 0.09 -0.10 7.61 -2.39 -0.02 -0.12 16 39 H 0.14 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.11 -0.64 7.96 -2.38 -0.02 -0.66 16 41 H 0.40 -3.97 8.74 -74.05 -0.65 -4.61 16 42 H 0.14 0.40 4.87 -2.91 -0.01 0.39 16 43 H 0.15 0.04 6.30 -2.91 -0.02 0.02 16 44 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 45 H 0.14 -0.51 7.43 -2.91 -0.02 -0.53 16 Total: 0.00 -13.62 390.49 5.84 -7.78 By element: Atomic # 1 Polarization: -7.45 SS G_CDS: 1.10 Total: -6.35 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.08 Total: 8.29 kcal Atomic # 8 Polarization: -1.63 SS G_CDS: -2.83 Total: -4.46 kcal Atomic # 14 Polarization: -7.48 SS G_CDS: 2.57 Total: -4.92 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -13.62 5.84 -7.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13429476_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.852 kcal (2) G-P(sol) polarization free energy of solvation -13.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds