Wall clock time and date at job start Mon Mar 8 2021 07:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47431 * 2 1 4 4 C 1.50696 * 109.47334 * 120.00617 * 2 1 3 5 5 C 1.38132 * 120.01362 * 254.97938 * 4 2 1 6 6 C 1.38264 * 120.07215 * 180.02562 * 5 4 2 7 7 C 1.38371 * 120.09632 * 359.97438 * 6 5 4 8 8 Cl 1.73598 * 119.98434 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.02626 * 359.71943 * 7 6 5 10 10 C 1.38687 * 119.93179 * 0.55667 * 9 7 6 11 11 O 1.35895 * 120.04626 * 179.71907 * 10 9 7 12 12 C 1.42897 * 117.00405 * 359.72367 * 11 10 9 13 13 C 1.53001 * 109.47209 * 179.97438 * 12 11 10 14 14 H 1.08992 * 109.47514 * 305.00520 * 13 12 11 15 15 C 1.53002 * 109.46637 * 65.00391 * 13 12 11 16 16 C 1.52997 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47452 * 300.00239 * 16 15 13 18 18 H 1.09002 * 109.46935 * 300.00125 * 17 16 15 19 19 O 1.42900 * 109.47304 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47159 * 59.99536 * 17 16 15 21 21 C 1.52997 * 109.47317 * 300.00546 * 20 17 16 22 22 H 0.96698 * 114.00094 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46731 * 240.00034 * 2 1 3 24 24 H 1.48501 * 109.99804 * 58.68459 * 3 2 1 25 25 H 1.48507 * 109.99741 * 180.02562 * 3 2 1 26 26 H 1.08003 * 119.96596 * 0.03556 * 5 4 2 27 27 H 1.08002 * 119.95520 * 179.97438 * 6 5 4 28 28 H 1.08003 * 120.03253 * 180.27289 * 9 7 6 29 29 H 1.09008 * 109.46889 * 60.00059 * 12 11 10 30 30 H 1.09000 * 109.47092 * 300.00371 * 12 11 10 31 31 H 1.08993 * 109.47662 * 299.99908 * 15 13 12 32 32 H 1.09002 * 109.47075 * 60.00414 * 15 13 12 33 33 H 1.09002 * 109.47153 * 60.00231 * 16 15 13 34 34 H 1.09001 * 109.47289 * 180.02562 * 16 15 13 35 35 H 0.96700 * 113.99696 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.46929 * 179.97438 * 20 17 16 37 37 H 1.09002 * 109.46716 * 60.00455 * 20 17 16 38 38 H 1.09002 * 109.47153 * 299.99641 * 21 20 17 39 39 H 1.09001 * 109.46832 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.4539 0.0158 2.2827 6 6 2.9157 -0.6349 3.4119 7 6 2.8551 -2.0150 3.4910 8 17 3.4351 -2.8290 4.9104 9 6 2.3269 -2.7457 2.4425 10 6 1.8686 -2.0946 1.3069 11 8 1.3544 -2.8108 0.2728 12 6 1.3217 -4.2317 0.4204 13 6 0.7136 -4.8611 -0.8346 14 1 -0.2655 -4.4211 -1.0238 15 6 1.6301 -4.5995 -2.0315 16 6 1.0224 -5.2293 -3.2864 17 6 0.8727 -6.7378 -3.0786 18 1 1.8520 -7.1774 -2.8893 19 8 0.3056 -7.3262 -4.2509 20 6 -0.0437 -6.9993 -1.8817 21 6 0.5640 -6.3695 -0.6268 22 1 -0.3933 -0.8834 -0.0004 23 1 1.7923 -0.5139 -0.8901 24 1 1.5356 2.4770 1.1922 25 1 3.5351 1.7700 -0.0006 26 1 2.5018 1.0931 2.2235 27 1 3.3243 -0.0652 4.2334 28 1 2.2755 -3.8226 2.5059 29 1 0.7154 -4.4930 1.2878 30 1 2.3359 -4.6059 0.5601 31 1 1.7371 -3.5249 -2.1793 32 1 2.6093 -5.0395 -1.8423 33 1 0.0431 -4.7897 -3.4757 34 1 1.6755 -5.0434 -4.1390 35 1 0.1822 -8.2833 -4.1902 36 1 -0.1507 -8.0739 -1.7340 37 1 -1.0230 -6.5597 -2.0711 38 1 1.5433 -6.8091 -0.4374 39 1 -0.0892 -6.5555 0.2258 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13616172_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:57:00 Heat of formation + Delta-G solvation = -113.846192 kcal Electronic energy + Delta-G solvation = -22472.376680 eV Core-core repulsion = 18985.955194 eV Total energy + Delta-G solvation = -3486.421486 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.101 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74460 -40.19417 -38.87442 -38.00394 -37.18046 -36.67391 -32.79201 -32.19177 -31.85103 -30.90962 -26.93031 -26.69094 -24.07296 -23.62284 -22.86930 -22.05630 -20.87275 -19.54631 -18.40541 -18.22247 -17.73669 -17.26318 -16.82591 -16.54371 -16.14352 -15.80157 -15.51462 -15.39850 -15.13836 -14.78928 -14.43301 -14.29660 -13.96694 -13.80416 -13.51756 -13.27246 -13.21136 -13.10911 -12.71552 -12.34115 -12.28417 -12.14183 -12.10795 -11.97540 -11.73150 -11.53927 -11.34560 -11.12002 -11.06306 -10.72038 -10.14522 -9.45918 -4.82717 -0.24665 0.03479 0.87205 1.34576 1.63201 1.90614 1.91463 2.26076 3.21868 3.43727 3.45544 3.56620 3.66721 3.77136 3.83915 3.86926 3.92012 3.96994 4.09094 4.16362 4.25248 4.29747 4.32879 4.36707 4.46802 4.48384 4.51413 4.56612 4.74380 4.80997 4.93443 4.96651 5.01646 5.05300 5.07616 5.13880 5.17820 5.27120 5.32833 5.42742 6.10230 6.58699 6.85904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.081 4.081 3 Si 0.805 3.195 4 C -0.154 4.154 5 C -0.083 4.083 6 C -0.148 4.148 7 C -0.001 4.001 8 Cl -0.059 7.059 9 C -0.200 4.200 10 C 0.155 3.845 11 O -0.308 6.308 12 C 0.057 3.943 13 C -0.081 4.081 14 H 0.081 0.919 15 C -0.106 4.106 16 C -0.114 4.114 17 C 0.100 3.900 18 H 0.061 0.939 19 O -0.591 6.591 20 C -0.145 4.145 21 C -0.107 4.107 22 H 0.373 0.627 23 H 0.085 0.915 24 H -0.283 1.283 25 H -0.266 1.266 26 H 0.140 0.860 27 H 0.151 0.849 28 H 0.158 0.842 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.393 0.607 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 -2.733 -0.857 2.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.189 4.189 3 Si 0.706 3.294 4 C -0.155 4.155 5 C -0.101 4.101 6 C -0.166 4.166 7 C -0.027 4.027 8 Cl -0.030 7.030 9 C -0.219 4.219 10 C 0.109 3.891 11 O -0.222 6.222 12 C -0.018 4.018 13 C -0.099 4.099 14 H 0.100 0.900 15 C -0.143 4.143 16 C -0.152 4.152 17 C 0.041 3.959 18 H 0.079 0.921 19 O -0.400 6.400 20 C -0.183 4.183 21 C -0.145 4.145 22 H 0.222 0.778 23 H 0.103 0.897 24 H -0.210 1.210 25 H -0.191 1.191 26 H 0.157 0.843 27 H 0.169 0.831 28 H 0.175 0.825 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.243 0.757 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.844 -0.930 -0.710 1.443 hybrid contribution 0.081 -2.424 1.299 2.751 sum 0.925 -3.355 0.589 3.530 Atomic orbital electron populations 1.86683 1.17272 1.34053 1.97104 1.25361 0.84603 1.14078 0.94887 0.92283 0.76476 0.74635 0.85960 1.20018 1.05128 0.91404 0.98953 1.20965 0.96802 0.99930 0.92385 1.21139 1.03154 0.92562 0.99775 1.20811 0.99614 0.92816 0.89498 1.98402 1.86990 1.79186 1.38397 1.21322 1.05464 1.01837 0.93288 1.18592 0.93182 0.90400 0.86963 1.86050 1.76903 1.21107 1.38098 1.23166 1.02179 0.76595 0.99845 1.21177 1.00027 0.95915 0.92794 0.90038 1.21483 0.98627 1.01166 0.93033 1.21478 1.01603 0.93722 0.98369 1.21918 0.95558 0.93951 0.84426 0.92140 1.86492 1.85858 1.27828 1.39808 1.22190 0.99567 1.01860 0.94705 1.21447 1.02381 0.92693 0.97971 0.77826 0.89702 1.20977 1.19128 0.84303 0.83122 0.82467 0.90484 0.90737 0.91104 0.91237 0.92020 0.91953 0.75720 0.90210 0.91757 0.90523 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.91 12.65 -148.98 -1.89 -3.79 16 2 C -0.08 -0.16 2.33 71.23 0.17 0.01 16 3 Si 0.81 0.12 30.40 68.60 2.09 2.21 16 4 C -0.15 -0.60 5.28 -19.77 -0.10 -0.70 16 5 C -0.08 -0.34 8.65 22.25 0.19 -0.15 16 6 C -0.15 -0.46 9.83 22.31 0.22 -0.25 16 7 C 0.00 0.00 6.32 22.31 0.14 0.14 16 8 Cl -0.06 -0.15 28.95 -2.72 -0.08 -0.23 16 9 C -0.20 -0.29 8.82 22.39 0.20 -0.09 16 10 C 0.16 0.35 6.62 22.50 0.15 0.50 16 11 O -0.31 0.12 8.57 -92.37 -0.79 -0.67 16 12 C 0.06 -0.27 4.12 71.98 0.30 0.02 16 13 C -0.08 0.41 2.43 -10.79 -0.03 0.39 16 14 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 15 C -0.11 0.35 5.10 30.59 0.16 0.50 16 16 C -0.11 0.06 5.57 30.60 0.17 0.23 16 17 C 0.10 -0.18 3.47 30.60 0.11 -0.08 16 18 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 19 O -0.59 -0.79 13.32 -148.98 -1.98 -2.77 16 20 C -0.15 0.70 5.55 30.59 0.17 0.87 16 21 C -0.11 0.74 5.20 30.59 0.16 0.90 16 22 H 0.37 -0.07 8.60 -74.06 -0.64 -0.71 16 23 H 0.08 0.00 7.83 -2.38 -0.02 -0.02 16 24 H -0.28 -1.48 6.81 99.48 0.68 -0.80 16 25 H -0.27 -0.76 7.11 99.48 0.71 -0.05 16 26 H 0.14 0.41 4.93 -2.91 -0.01 0.39 16 27 H 0.15 0.00 8.06 -2.91 -0.02 -0.03 16 28 H 0.16 -0.39 6.30 -2.91 -0.02 -0.41 16 29 H 0.08 -0.50 7.65 -2.38 -0.02 -0.51 16 30 H 0.07 -0.45 7.67 -2.39 -0.02 -0.47 16 31 H 0.07 -0.12 7.82 -2.39 -0.02 -0.14 16 32 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.06 0.07 8.14 -2.39 -0.02 0.06 16 35 H 0.39 -2.62 9.08 -74.06 -0.67 -3.29 16 36 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 Total: 0.00 -10.85 328.33 -0.89 -11.74 By element: Atomic # 1 Polarization: -8.56 SS G_CDS: -0.23 Total: -8.79 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 1.99 Total: 2.30 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: -4.66 Total: -7.24 kcal Atomic # 14 Polarization: 0.12 SS G_CDS: 2.09 Total: 2.21 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -10.85 -0.89 -11.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13616172_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.102 kcal (2) G-P(sol) polarization free energy of solvation -10.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds