Wall clock time and date at job start Mon Mar 8 2021 09:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38127 * 120.02786 * 2 1 4 4 C 1.38287 * 120.05507 * 180.27736 * 3 2 1 5 5 C 1.38250 * 120.11301 * 359.76379 * 4 3 2 6 6 C 1.50697 * 119.97331 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.46939 * 120.02067 * 6 5 4 8 8 Si 1.86308 * 109.47101 * 0.02562 * 6 5 4 9 9 H 1.48493 * 109.46955 * 179.97438 * 8 6 5 10 10 H 1.48498 * 109.46974 * 300.00303 * 8 6 5 11 11 H 1.48500 * 109.46858 * 59.99890 * 8 6 5 12 12 C 1.38166 * 120.05469 * 359.97438 * 5 4 3 13 13 C 1.38713 * 119.94316 * 359.97438 * 12 5 4 14 14 O 1.35904 * 120.05614 * 179.97438 * 13 12 5 15 15 C 1.42903 * 116.99628 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.47405 * 64.99720 * 16 15 14 18 18 Si 1.63104 * 113.99972 * 179.97438 * 17 16 15 19 19 C 1.86297 * 109.47259 * 300.00387 * 18 17 16 20 20 C 1.86303 * 109.46923 * 60.00303 * 18 17 16 21 21 C 1.86299 * 109.46989 * 180.02562 * 18 17 16 22 22 C 1.53000 * 109.46921 * 59.99970 * 21 18 17 23 23 C 1.52997 * 109.46904 * 180.02562 * 21 18 17 24 24 C 1.52995 * 109.46973 * 300.00341 * 21 18 17 25 25 H 1.08994 * 109.47055 * 270.23073 * 1 2 3 26 26 H 1.08994 * 109.47009 * 30.23227 * 1 2 3 27 27 H 1.09003 * 109.46678 * 150.23241 * 1 2 3 28 28 H 1.08000 * 119.97131 * 0.02562 * 3 2 1 29 29 H 1.08005 * 119.94559 * 179.74646 * 4 3 2 30 30 H 1.08994 * 109.47527 * 240.02364 * 6 5 4 31 31 H 0.96708 * 113.99675 * 180.02562 * 7 6 5 32 32 H 1.07995 * 120.02700 * 180.02562 * 12 5 4 33 33 H 1.09002 * 109.47382 * 59.99787 * 15 14 13 34 34 H 1.09001 * 109.46938 * 299.99774 * 15 14 13 35 35 H 1.09002 * 109.46642 * 184.99995 * 16 15 14 36 36 H 1.09002 * 109.47069 * 304.99524 * 16 15 14 37 37 H 1.08998 * 109.47381 * 59.99876 * 19 18 17 38 38 H 1.08999 * 109.47492 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.46818 * 299.99971 * 19 18 17 40 40 H 1.08998 * 109.46674 * 59.99804 * 20 18 17 41 41 H 1.08991 * 109.47013 * 179.97438 * 20 18 17 42 42 H 1.08998 * 109.47060 * 299.99722 * 20 18 17 43 43 H 1.08999 * 109.47189 * 60.00528 * 22 21 18 44 44 H 1.08998 * 109.46838 * 179.97438 * 22 21 18 45 45 H 1.08991 * 109.47403 * 299.99887 * 22 21 18 46 46 H 1.08994 * 109.47445 * 59.99723 * 23 21 18 47 47 H 1.09000 * 109.46663 * 180.02562 * 23 21 18 48 48 H 1.09002 * 109.47015 * 299.99953 * 23 21 18 49 49 H 1.08999 * 109.47775 * 60.00054 * 24 21 18 50 50 H 1.09008 * 109.47049 * 180.02562 * 24 21 18 51 51 H 1.09002 * 109.47582 * 299.99598 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5811 1.1965 -0.0058 5 6 4.2753 0.0010 -0.0067 6 6 5.7822 0.0054 -0.0136 7 8 6.2658 -0.6651 1.1521 8 14 6.3981 1.7637 -0.0190 9 1 7.8830 1.7680 -0.0252 10 1 5.8954 2.4605 -1.2302 11 1 5.9065 2.4640 1.1947 12 6 3.5885 -1.1979 -0.0012 13 6 2.2014 -1.2013 0.0057 14 8 1.5236 -2.3792 0.0105 15 6 2.3037 -3.5765 0.0087 16 6 1.3735 -4.7912 0.0141 17 8 0.6266 -4.8247 -1.2037 18 14 -0.4052 -6.0830 -1.3147 19 6 0.5491 -7.6797 -1.2109 20 6 -1.6351 -6.0027 0.0823 21 6 -1.3077 -6.0043 -2.9426 22 6 -0.2972 -6.0705 -4.0896 23 6 -2.2760 -7.1843 -3.0465 24 6 -2.0912 -4.6930 -3.0284 25 1 -0.3633 0.0041 1.0276 26 1 -0.3633 0.8878 -0.5174 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6582 2.1312 0.0004 29 1 4.1198 2.1327 -0.0099 30 1 6.1430 -0.5087 -0.9044 31 1 7.2303 -0.7000 1.2140 32 1 4.1313 -2.1316 -0.0015 33 1 2.9367 -3.5992 0.8958 34 1 2.9285 -3.6018 -0.8841 35 1 1.9658 -5.7020 0.1023 36 1 0.6882 -4.7203 0.8588 37 1 1.0774 -7.7260 -0.2587 38 1 -0.1405 -8.5206 -1.2847 39 1 1.2687 -7.7266 -2.0283 40 1 -2.1934 -5.0685 0.0216 41 1 -2.3249 -6.8433 0.0079 42 1 -1.1068 -6.0490 1.0346 43 1 0.2610 -7.0047 -4.0285 44 1 -0.8252 -6.0249 -5.0420 45 1 0.3923 -5.2297 -4.0154 46 1 -2.9957 -7.1367 -2.2294 47 1 -2.8036 -7.1384 -3.9992 48 1 -1.7180 -8.1186 -2.9852 49 1 -1.4017 -3.8521 -2.9542 50 1 -2.6196 -4.6471 -3.9808 51 1 -2.8111 -4.6457 -2.2113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_13826624_10902662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:16:32 Heat of formation + Delta-G solvation = -153.824926 kcal Electronic energy + Delta-G solvation = -26522.081873 eV Core-core repulsion = 22930.670752 eV Total energy + Delta-G solvation = -3591.411121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25471 -39.12473 -37.88462 -37.23799 -36.83000 -33.98743 -31.45531 -30.32003 -29.38022 -29.11123 -29.09055 -27.86013 -27.38251 -25.25606 -24.54062 -22.68563 -21.77095 -20.41637 -18.79395 -18.39949 -18.07299 -17.38854 -16.81745 -16.45345 -16.15120 -16.03096 -15.65320 -15.43110 -15.09811 -14.86275 -14.72737 -14.67485 -14.39329 -14.26274 -14.05629 -13.79904 -13.56982 -13.44356 -13.25744 -13.23972 -12.98875 -12.95718 -12.92697 -12.90191 -12.64366 -12.42402 -12.38445 -12.11006 -11.97534 -11.82593 -11.76168 -11.70081 -11.61385 -11.49736 -11.28159 -10.38311 -10.37792 -10.07295 -9.61548 -8.95805 0.34977 0.54478 1.14903 1.42682 1.44555 1.51519 1.73051 1.91659 2.04270 2.26977 2.42482 2.74261 3.39472 3.74125 3.87187 3.96543 4.02311 4.07056 4.12369 4.12681 4.21666 4.23573 4.30582 4.36558 4.45231 4.48352 4.58963 4.64565 4.69204 4.71854 4.74102 4.77871 4.81021 4.81772 4.86420 4.90989 4.97609 5.00515 5.10913 5.11572 5.17994 5.32954 5.33801 5.35900 5.40867 5.42171 5.50240 5.52306 5.55278 5.59577 5.62707 5.89747 6.53653 6.56025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.112 4.112 3 C -0.077 4.077 4 C -0.160 4.160 5 C -0.042 4.042 6 C -0.083 4.083 7 O -0.544 6.544 8 Si 0.950 3.050 9 H -0.259 1.259 10 H -0.250 1.250 11 H -0.247 1.247 12 C -0.177 4.177 13 C 0.131 3.869 14 O -0.299 6.299 15 C 0.056 3.944 16 C 0.087 3.913 17 O -0.618 6.618 18 Si 1.286 2.714 19 C -0.512 4.512 20 C -0.511 4.511 21 C -0.374 4.374 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.134 4.134 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.380 0.620 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 -1.180 0.034 1.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.113 4.113 3 C -0.095 4.095 4 C -0.178 4.178 5 C -0.043 4.043 6 C -0.194 4.194 7 O -0.350 6.350 8 Si 0.773 3.227 9 H -0.183 1.183 10 H -0.173 1.173 11 H -0.170 1.170 12 C -0.196 4.196 13 C 0.086 3.914 14 O -0.213 6.213 15 C -0.019 4.019 16 C 0.012 3.988 17 O -0.578 6.578 18 Si 1.417 2.583 19 C -0.614 4.614 20 C -0.612 4.612 21 C -0.417 4.417 22 C -0.191 4.191 23 C -0.194 4.194 24 C -0.191 4.191 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.227 0.773 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.104 -0.206 0.005 1.124 hybrid contribution 0.469 -0.972 -0.027 1.080 sum 1.574 -1.178 -0.022 1.966 Atomic orbital electron populations 1.20640 0.90237 1.03085 1.02423 1.19322 0.96746 0.90226 1.04968 1.20800 0.93416 0.97158 0.98123 1.20836 0.94821 0.96882 1.05224 1.18990 0.93099 0.93031 0.99151 1.24765 0.94430 1.09259 0.90910 1.86505 1.26535 1.79753 1.42242 0.85685 0.79543 0.75580 0.81913 1.18291 1.17323 1.17027 1.21013 0.92496 0.98976 1.07091 1.18824 0.90185 0.85864 0.96539 1.86127 1.35095 1.11773 1.88260 1.23004 0.93926 0.82697 1.02290 1.22081 0.94561 0.96243 0.85947 1.85407 1.62869 1.68636 1.40838 0.76739 0.60353 0.55955 0.65215 1.27050 1.09867 1.20080 1.04392 1.27024 1.13826 1.04887 1.15500 1.25767 1.03132 0.98109 1.14735 1.21507 0.98281 1.01649 0.97658 1.21556 0.98713 0.96904 1.02204 1.21506 0.99744 0.96077 1.01765 0.91311 0.91596 0.90765 0.84929 0.86192 0.90571 0.77275 0.85072 0.90605 0.90828 0.90501 0.91440 0.91509 0.90659 0.90861 0.90762 0.90789 0.91506 0.92756 0.92813 0.92169 0.92512 0.92516 0.92563 0.92052 0.92861 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.13 9.79 36.01 0.35 0.22 16 2 C -0.11 -0.30 5.89 -104.47 -0.62 -0.92 16 3 C -0.08 -0.15 9.70 -39.60 -0.38 -0.53 16 4 C -0.16 -0.35 8.67 -39.56 -0.34 -0.69 16 5 C -0.04 -0.10 5.42 -104.65 -0.57 -0.67 16 6 C -0.08 -0.02 2.81 36.00 0.10 0.08 16 7 O -0.54 -0.23 12.74 -35.23 -0.45 -0.68 16 8 Si 0.95 -0.14 25.07 -169.99 -4.26 -4.40 16 9 H -0.26 0.05 7.11 56.52 0.40 0.45 16 10 H -0.25 -0.11 7.11 56.52 0.40 0.30 16 11 H -0.25 -0.33 7.11 56.52 0.40 0.08 16 12 C -0.18 -0.46 8.60 -39.43 -0.34 -0.80 16 13 C 0.13 0.42 6.66 -39.21 -0.26 0.16 16 14 O -0.30 -0.84 9.15 -24.29 -0.22 -1.06 16 15 C 0.06 0.01 5.12 37.16 0.19 0.20 16 16 C 0.09 -0.07 5.50 37.16 0.20 0.13 16 17 O -0.62 -0.39 8.52 -40.09 -0.34 -0.73 16 18 Si 1.29 -1.19 8.45 -169.99 -1.44 -2.63 16 19 C -0.51 0.49 8.50 101.05 0.86 1.35 16 20 C -0.51 0.22 8.50 101.05 0.86 1.08 16 21 C -0.37 0.02 0.53 -90.62 -0.05 -0.03 16 22 C -0.13 -0.04 7.85 37.16 0.29 0.25 16 23 C -0.14 0.06 7.85 37.16 0.29 0.35 16 24 C -0.13 -0.07 7.84 37.15 0.29 0.22 16 25 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.07 -0.01 8.09 -51.93 -0.42 -0.43 16 27 H 0.07 0.14 7.53 -51.93 -0.39 -0.25 16 28 H 0.13 -0.05 8.06 -52.49 -0.42 -0.47 16 29 H 0.12 0.09 4.87 -52.48 -0.26 -0.16 16 30 H 0.08 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.38 -1.55 8.74 45.56 0.40 -1.15 16 32 H 0.13 0.16 6.30 -52.49 -0.33 -0.17 16 33 H 0.08 -0.11 7.66 -51.93 -0.40 -0.51 16 34 H 0.07 -0.02 7.66 -51.93 -0.40 -0.42 16 35 H 0.08 -0.25 7.21 -51.93 -0.37 -0.63 16 36 H 0.07 -0.11 7.21 -51.93 -0.37 -0.48 16 37 H 0.07 -0.10 7.48 -51.93 -0.39 -0.49 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 39 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 40 H 0.07 0.01 7.79 -51.93 -0.40 -0.40 16 41 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 42 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 43 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 44 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 45 H 0.06 0.04 7.96 -51.93 -0.41 -0.37 16 46 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 47 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 48 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 49 H 0.06 0.07 7.97 -51.93 -0.41 -0.35 16 50 H 0.05 0.04 8.14 -51.92 -0.42 -0.38 16 51 H 0.05 0.00 7.80 -51.93 -0.40 -0.41 16 LS Contribution 401.58 15.07 6.05 6.05 Total: 0.00 -5.73 401.58 -8.48 -14.22 By element: Atomic # 1 Polarization: -2.47 SS G_CDS: -8.71 Total: -11.17 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 0.88 Total: 0.40 kcal Atomic # 8 Polarization: -1.46 SS G_CDS: -1.01 Total: -2.47 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: -5.70 Total: -7.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -5.73 -8.48 -14.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13826624_10902662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.606 kcal (2) G-P(sol) polarization free energy of solvation -5.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds