Wall clock time and date at job start Mon Mar 8 2021 09:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38127 * 120.02786 * 2 1 4 4 C 1.38287 * 120.05507 * 180.27736 * 3 2 1 5 5 C 1.38250 * 120.11301 * 359.76379 * 4 3 2 6 6 C 1.50697 * 119.97331 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.46939 * 120.02067 * 6 5 4 8 8 Si 1.86308 * 109.47101 * 0.02562 * 6 5 4 9 9 H 1.48493 * 109.46955 * 179.97438 * 8 6 5 10 10 H 1.48498 * 109.46974 * 300.00303 * 8 6 5 11 11 H 1.48500 * 109.46858 * 59.99890 * 8 6 5 12 12 C 1.38166 * 120.05469 * 359.97438 * 5 4 3 13 13 C 1.38713 * 119.94316 * 359.97438 * 12 5 4 14 14 O 1.35904 * 120.05614 * 179.97438 * 13 12 5 15 15 C 1.42903 * 116.99628 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.47405 * 64.99720 * 16 15 14 18 18 Si 1.63104 * 113.99972 * 179.97438 * 17 16 15 19 19 C 1.86297 * 109.47259 * 300.00387 * 18 17 16 20 20 C 1.86303 * 109.46923 * 60.00303 * 18 17 16 21 21 C 1.86299 * 109.46989 * 180.02562 * 18 17 16 22 22 C 1.53000 * 109.46921 * 59.99970 * 21 18 17 23 23 C 1.52997 * 109.46904 * 180.02562 * 21 18 17 24 24 C 1.52995 * 109.46973 * 300.00341 * 21 18 17 25 25 H 1.08994 * 109.47055 * 270.23073 * 1 2 3 26 26 H 1.08994 * 109.47009 * 30.23227 * 1 2 3 27 27 H 1.09003 * 109.46678 * 150.23241 * 1 2 3 28 28 H 1.08000 * 119.97131 * 0.02562 * 3 2 1 29 29 H 1.08005 * 119.94559 * 179.74646 * 4 3 2 30 30 H 1.08994 * 109.47527 * 240.02364 * 6 5 4 31 31 H 0.96708 * 113.99675 * 180.02562 * 7 6 5 32 32 H 1.07995 * 120.02700 * 180.02562 * 12 5 4 33 33 H 1.09002 * 109.47382 * 59.99787 * 15 14 13 34 34 H 1.09001 * 109.46938 * 299.99774 * 15 14 13 35 35 H 1.09002 * 109.46642 * 184.99995 * 16 15 14 36 36 H 1.09002 * 109.47069 * 304.99524 * 16 15 14 37 37 H 1.08998 * 109.47381 * 59.99876 * 19 18 17 38 38 H 1.08999 * 109.47492 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.46818 * 299.99971 * 19 18 17 40 40 H 1.08998 * 109.46674 * 59.99804 * 20 18 17 41 41 H 1.08991 * 109.47013 * 179.97438 * 20 18 17 42 42 H 1.08998 * 109.47060 * 299.99722 * 20 18 17 43 43 H 1.08999 * 109.47189 * 60.00528 * 22 21 18 44 44 H 1.08998 * 109.46838 * 179.97438 * 22 21 18 45 45 H 1.08991 * 109.47403 * 299.99887 * 22 21 18 46 46 H 1.08994 * 109.47445 * 59.99723 * 23 21 18 47 47 H 1.09000 * 109.46663 * 180.02562 * 23 21 18 48 48 H 1.09002 * 109.47015 * 299.99953 * 23 21 18 49 49 H 1.08999 * 109.47775 * 60.00054 * 24 21 18 50 50 H 1.09008 * 109.47049 * 180.02562 * 24 21 18 51 51 H 1.09002 * 109.47582 * 299.99598 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5811 1.1965 -0.0058 5 6 4.2753 0.0010 -0.0067 6 6 5.7822 0.0054 -0.0136 7 8 6.2658 -0.6651 1.1521 8 14 6.3981 1.7637 -0.0190 9 1 7.8830 1.7680 -0.0252 10 1 5.8954 2.4605 -1.2302 11 1 5.9065 2.4640 1.1947 12 6 3.5885 -1.1979 -0.0012 13 6 2.2014 -1.2013 0.0057 14 8 1.5236 -2.3792 0.0105 15 6 2.3037 -3.5765 0.0087 16 6 1.3735 -4.7912 0.0141 17 8 0.6266 -4.8247 -1.2037 18 14 -0.4052 -6.0830 -1.3147 19 6 0.5491 -7.6797 -1.2109 20 6 -1.6351 -6.0027 0.0823 21 6 -1.3077 -6.0043 -2.9426 22 6 -0.2972 -6.0705 -4.0896 23 6 -2.2760 -7.1843 -3.0465 24 6 -2.0912 -4.6930 -3.0284 25 1 -0.3633 0.0041 1.0276 26 1 -0.3633 0.8878 -0.5174 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6582 2.1312 0.0004 29 1 4.1198 2.1327 -0.0099 30 1 6.1430 -0.5087 -0.9044 31 1 7.2303 -0.7000 1.2140 32 1 4.1313 -2.1316 -0.0015 33 1 2.9367 -3.5992 0.8958 34 1 2.9285 -3.6018 -0.8841 35 1 1.9658 -5.7020 0.1023 36 1 0.6882 -4.7203 0.8588 37 1 1.0774 -7.7260 -0.2587 38 1 -0.1405 -8.5206 -1.2847 39 1 1.2687 -7.7266 -2.0283 40 1 -2.1934 -5.0685 0.0216 41 1 -2.3249 -6.8433 0.0079 42 1 -1.1068 -6.0490 1.0346 43 1 0.2610 -7.0047 -4.0285 44 1 -0.8252 -6.0249 -5.0420 45 1 0.3923 -5.2297 -4.0154 46 1 -2.9957 -7.1367 -2.2294 47 1 -2.8036 -7.1384 -3.9992 48 1 -1.7180 -8.1186 -2.9852 49 1 -1.4017 -3.8521 -2.9542 50 1 -2.6196 -4.6471 -3.9808 51 1 -2.8111 -4.6457 -2.2113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13826624_10902662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:16:31 Heat of formation + Delta-G solvation = -145.996978 kcal Electronic energy + Delta-G solvation = -26521.742428 eV Core-core repulsion = 22930.670752 eV Total energy + Delta-G solvation = -3591.071676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34824 -39.16215 -37.85781 -37.25389 -36.82499 -34.06954 -31.50672 -30.34781 -29.31307 -29.16666 -29.05725 -27.83480 -27.37914 -25.29653 -24.56605 -22.72878 -21.86194 -20.41257 -18.83798 -18.38634 -18.03202 -17.45592 -16.90709 -16.47791 -16.14912 -16.01881 -15.65995 -15.43099 -15.13057 -14.84935 -14.74915 -14.67976 -14.44946 -14.31792 -14.03117 -13.80699 -13.51511 -13.36925 -13.29237 -13.17324 -13.05965 -12.95695 -12.95328 -12.91093 -12.63124 -12.46250 -12.39410 -12.16203 -11.98671 -11.82175 -11.78813 -11.70721 -11.62633 -11.47654 -11.24207 -10.35768 -10.31174 -10.04970 -9.72770 -9.09077 0.22501 0.40625 1.16420 1.46374 1.51745 1.52857 1.79137 1.91360 2.13923 2.24349 2.48582 2.63424 3.42600 3.73381 3.84733 3.96277 4.00693 4.09657 4.12550 4.13399 4.21806 4.29258 4.33633 4.40798 4.46998 4.47962 4.56717 4.72991 4.73440 4.75796 4.79282 4.79321 4.80294 4.82421 4.82874 4.83154 4.90045 5.00008 5.09129 5.09426 5.20076 5.24436 5.29506 5.33850 5.40752 5.42409 5.43965 5.48998 5.50761 5.60119 5.65106 5.81064 6.45005 6.80944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.131 4.131 3 C -0.081 4.081 4 C -0.174 4.174 5 C -0.056 4.056 6 C -0.084 4.084 7 O -0.561 6.561 8 Si 0.983 3.017 9 H -0.254 1.254 10 H -0.259 1.259 11 H -0.271 1.271 12 C -0.187 4.187 13 C 0.117 3.883 14 O -0.314 6.314 15 C 0.048 3.952 16 C 0.078 3.922 17 O -0.638 6.638 18 Si 1.314 2.686 19 C -0.515 4.515 20 C -0.518 4.518 21 C -0.383 4.383 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.136 4.136 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.152 0.848 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.398 0.602 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.065 0.935 49 H 0.052 0.948 50 H 0.047 0.953 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 -1.776 0.366 2.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.131 4.131 3 C -0.099 4.099 4 C -0.191 4.191 5 C -0.057 4.057 6 C -0.194 4.194 7 O -0.370 6.370 8 Si 0.807 3.193 9 H -0.178 1.178 10 H -0.183 1.183 11 H -0.196 1.196 12 C -0.206 4.206 13 C 0.072 3.928 14 O -0.228 6.228 15 C -0.027 4.027 16 C 0.003 3.997 17 O -0.597 6.597 18 Si 1.444 2.556 19 C -0.617 4.617 20 C -0.620 4.620 21 C -0.425 4.425 22 C -0.193 4.193 23 C -0.197 4.197 24 C -0.193 4.193 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.170 0.830 29 H 0.147 0.853 30 H 0.113 0.887 31 H 0.249 0.751 32 H 0.159 0.841 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.821 -0.809 0.327 2.019 hybrid contribution 0.252 -0.777 -0.124 0.826 sum 2.073 -1.585 0.203 2.618 Atomic orbital electron populations 1.20619 0.89549 1.03187 1.02633 1.19605 0.97517 0.90549 1.05463 1.21082 0.93596 0.97768 0.97479 1.21082 0.95215 0.97396 1.05448 1.19351 0.94526 0.93030 0.98760 1.24803 0.93129 1.09817 0.91619 1.86455 1.28476 1.79766 1.42344 0.85224 0.79305 0.74667 0.80104 1.17840 1.18292 1.19591 1.21183 0.92463 0.99591 1.07334 1.19057 0.90653 0.86265 0.96857 1.86110 1.36034 1.12339 1.88287 1.23239 0.94326 0.82136 1.02979 1.22330 0.94909 0.96855 0.85634 1.85397 1.63371 1.69393 1.41556 0.76231 0.59650 0.55761 0.63926 1.27050 1.09966 1.19831 1.04868 1.27115 1.14124 1.04617 1.16114 1.25926 1.03268 0.97795 1.15551 1.21529 0.98338 1.01848 0.97590 1.21597 0.98864 0.97138 1.02120 1.21522 0.99739 0.96345 1.01681 0.91016 0.90292 0.91800 0.83008 0.85270 0.88733 0.75115 0.84136 0.89227 0.90777 0.87836 0.90886 0.90641 0.90323 0.90954 0.91592 0.90380 0.91026 0.91845 0.93410 0.92805 0.91893 0.93183 0.91619 0.92928 0.93361 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 9.79 71.24 0.70 0.36 16 2 C -0.13 -0.84 5.89 -19.77 -0.12 -0.95 16 3 C -0.08 -0.35 9.70 22.26 0.22 -0.14 16 4 C -0.17 -0.86 8.67 22.28 0.19 -0.67 16 5 C -0.06 -0.30 5.42 -19.88 -0.11 -0.40 16 6 C -0.08 -0.01 2.81 71.23 0.20 0.19 16 7 O -0.56 -0.21 12.74 -148.98 -1.90 -2.10 16 8 Si 0.98 -0.46 25.07 68.60 1.72 1.26 16 9 H -0.25 0.34 7.11 99.48 0.71 1.04 16 10 H -0.26 -0.21 7.11 99.48 0.71 0.50 16 11 H -0.27 -0.90 7.11 99.48 0.71 -0.19 16 12 C -0.19 -1.10 8.60 22.37 0.19 -0.91 16 13 C 0.12 0.88 6.66 22.51 0.15 1.03 16 14 O -0.31 -2.09 9.15 -87.83 -0.80 -2.89 16 15 C 0.05 0.02 5.12 71.98 0.37 0.39 16 16 C 0.08 -0.15 5.50 71.98 0.40 0.24 16 17 O -0.64 -0.96 8.52 -144.34 -1.23 -2.19 16 18 Si 1.31 -2.59 8.45 68.60 0.58 -2.01 16 19 C -0.51 1.53 8.50 113.37 0.96 2.49 16 20 C -0.52 0.50 8.50 113.37 0.96 1.47 16 21 C -0.38 -0.15 0.53 -10.80 -0.01 -0.16 16 22 C -0.14 -0.17 7.85 71.98 0.56 0.40 16 23 C -0.14 0.11 7.85 71.98 0.56 0.68 16 24 C -0.14 -0.30 7.84 71.98 0.56 0.26 16 25 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.08 0.01 8.09 -2.39 -0.02 -0.01 16 27 H 0.06 0.33 7.53 -2.39 -0.02 0.32 16 28 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 29 H 0.13 0.27 4.87 -2.91 -0.01 0.25 16 30 H 0.09 -0.37 7.96 -2.39 -0.02 -0.38 16 31 H 0.40 -3.58 8.74 -74.05 -0.65 -4.22 16 32 H 0.14 0.39 6.30 -2.91 -0.02 0.37 16 33 H 0.09 -0.26 7.66 -2.39 -0.02 -0.28 16 34 H 0.07 -0.01 7.66 -2.39 -0.02 -0.02 16 35 H 0.10 -0.80 7.21 -2.39 -0.02 -0.82 16 36 H 0.07 -0.25 7.21 -2.39 -0.02 -0.26 16 37 H 0.07 -0.34 7.48 -2.39 -0.02 -0.36 16 38 H 0.08 -0.27 7.79 -2.39 -0.02 -0.28 16 39 H 0.07 -0.18 7.79 -2.38 -0.02 -0.19 16 40 H 0.06 0.05 7.79 -2.39 -0.02 0.03 16 41 H 0.08 -0.15 7.79 -2.39 -0.02 -0.17 16 42 H 0.07 -0.14 7.48 -2.39 -0.02 -0.16 16 43 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 44 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.05 0.13 7.96 -2.39 -0.02 0.11 16 46 H 0.06 -0.14 7.79 -2.39 -0.02 -0.15 16 47 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 49 H 0.05 0.20 7.97 -2.39 -0.02 0.18 16 50 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 51 H 0.06 0.06 7.80 -2.39 -0.02 0.04 16 Total: 0.00 -13.57 401.58 5.16 -8.41 By element: Atomic # 1 Polarization: -5.74 SS G_CDS: 0.99 Total: -4.75 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.81 Total: 4.28 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -3.93 Total: -7.18 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.30 Total: -0.76 kcal Total: -13.57 5.16 -8.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13826624_10902662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.586 kcal (2) G-P(sol) polarization free energy of solvation -13.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds