Wall clock time and date at job start Mon Mar 8 2021 09:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38709 * 120.03025 * 2 1 4 4 O 1.35906 * 120.05198 * 0.02562 * 3 2 1 5 5 C 1.42901 * 117.00155 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.47372 * 180.02562 * 5 4 3 7 7 H 1.08999 * 112.84861 * 43.80495 * 6 5 4 8 8 C 1.53780 * 113.61827 * 174.99988 * 6 5 4 9 9 C 1.53778 * 87.08307 * 139.97983 * 8 6 5 10 10 H 1.09004 * 113.61179 * 89.12212 * 9 8 6 11 11 O 1.42901 * 113.61540 * 219.93459 * 9 8 6 12 12 C 1.53774 * 87.08203 * 334.56944 * 9 8 6 13 13 C 1.38755 * 119.89505 * 180.02562 * 3 2 1 14 14 C 1.38125 * 119.93999 * 0.25905 * 13 3 2 15 15 C 1.50698 * 119.96886 * 179.72536 * 14 13 3 16 16 O 1.42898 * 109.47286 * 64.99752 * 15 14 13 17 17 Si 1.86303 * 109.46733 * 184.99666 * 15 14 13 18 18 C 1.38289 * 120.05202 * 359.48967 * 14 13 3 19 19 C 1.38167 * 120.03230 * 180.02562 * 2 1 3 20 20 H 1.09000 * 109.47146 * 89.99918 * 1 2 3 21 21 H 1.09006 * 109.47104 * 209.99762 * 1 2 3 22 22 H 1.08997 * 109.47215 * 329.99873 * 1 2 3 23 23 H 1.09003 * 109.47208 * 300.00726 * 5 4 3 24 24 H 1.09006 * 109.47043 * 60.00389 * 5 4 3 25 25 H 1.08995 * 113.61936 * 254.53630 * 8 6 5 26 26 H 1.09003 * 113.61072 * 25.35263 * 8 6 5 27 27 H 0.96709 * 113.99648 * 179.97438 * 11 9 8 28 28 H 1.08999 * 113.61771 * 270.88078 * 12 9 8 29 29 H 1.09002 * 113.61376 * 139.97553 * 12 9 8 30 30 H 1.08002 * 120.02789 * 179.97438 * 13 3 2 31 31 H 1.08996 * 109.46823 * 304.99236 * 15 14 13 32 32 H 0.96703 * 113.99779 * 179.97438 * 16 15 14 33 33 H 1.48504 * 109.99853 * 178.67944 * 17 15 14 34 34 H 1.48503 * 110.00006 * 299.99870 * 17 15 14 35 35 H 1.08001 * 119.93832 * 180.25972 * 18 14 13 36 36 H 1.08006 * 119.96869 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2011 1.2009 0.0000 4 8 1.5233 2.3788 0.0005 5 6 2.3033 3.5762 -0.0001 6 6 1.3731 4.7909 0.0013 7 1 0.5410 4.6860 0.6975 8 6 2.1130 6.1334 0.1236 9 6 1.1146 6.6878 -0.9063 10 1 0.2110 7.1022 -0.4592 11 8 1.7096 7.5625 -1.8670 12 6 0.9481 5.2430 -1.4058 13 6 3.5887 1.1976 -0.0005 14 6 4.2752 -0.0009 -0.0065 15 6 5.7822 -0.0052 -0.0133 16 8 6.2657 0.5600 1.2068 17 14 6.3973 -1.7564 -0.1732 18 6 3.5808 -1.1968 -0.0012 19 6 2.1984 -1.1962 -0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 2.9329 3.6002 0.8894 24 1 2.9314 3.6002 -0.8906 25 1 2.0249 6.5925 1.1082 26 1 3.1410 6.0998 -0.2373 27 1 1.0866 7.9141 -2.5177 28 1 1.6571 4.9663 -2.1860 29 1 -0.0806 4.9832 -1.6557 30 1 4.1313 2.1314 -0.0010 31 1 6.1433 0.5851 -0.8555 32 1 7.2301 0.5890 1.2718 33 1 7.8818 -1.7716 -0.2133 34 1 5.9117 -2.5717 0.9690 35 1 4.1195 -2.1329 -0.0017 36 1 1.6584 -2.1315 -0.0005 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13826624_11354860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:30:17 Heat of formation + Delta-G solvation = -68.738183 kcal Electronic energy + Delta-G solvation = -18360.975676 eV Core-core repulsion = 15391.847632 eV Total energy + Delta-G solvation = -2969.128045 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 251.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50850 -40.33898 -38.84433 -37.62116 -36.03354 -34.10051 -31.28611 -29.38719 -29.19257 -26.76997 -25.24338 -24.31833 -22.76368 -21.99114 -20.53332 -18.79500 -18.55864 -18.50916 -17.37578 -17.03262 -16.82555 -16.32255 -15.97059 -15.61628 -15.23276 -14.82813 -14.55579 -14.26713 -14.08475 -13.91585 -13.50222 -13.38618 -13.14013 -12.90008 -12.70289 -12.56127 -12.44268 -12.19657 -11.93374 -11.76035 -11.62853 -11.24853 -10.77294 -10.55548 -9.79458 -9.15953 -4.94532 0.17865 0.37109 1.26109 1.58028 1.91433 2.09047 2.57265 3.27302 3.33420 3.42029 3.53365 3.66354 3.75312 3.81544 3.90957 3.99902 4.16147 4.17460 4.20593 4.24751 4.36515 4.43743 4.57395 4.67907 4.70623 4.72394 4.76124 4.82379 4.86746 4.95134 5.09296 5.22360 5.26980 5.33211 5.41365 5.47477 5.77383 6.35188 6.53089 6.85381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.126 4.126 3 C 0.113 3.887 4 O -0.318 6.318 5 C 0.070 3.930 6 C -0.104 4.104 7 H 0.109 0.891 8 C -0.123 4.123 9 C 0.076 3.924 10 H 0.101 0.899 11 O -0.581 6.581 12 C -0.160 4.160 13 C -0.192 4.192 14 C -0.055 4.055 15 C -0.091 4.091 16 O -0.559 6.559 17 Si 0.771 3.229 18 C -0.157 4.157 19 C -0.079 4.079 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.396 0.604 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.395 0.605 33 H -0.285 1.285 34 H -0.296 1.296 35 H 0.143 0.857 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 -0.451 -2.810 3.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.127 4.127 3 C 0.067 3.933 4 O -0.232 6.232 5 C -0.005 4.005 6 C -0.122 4.122 7 H 0.127 0.873 8 C -0.161 4.161 9 C 0.017 3.983 10 H 0.118 0.882 11 O -0.390 6.390 12 C -0.198 4.198 13 C -0.211 4.211 14 C -0.055 4.055 15 C -0.199 4.199 16 O -0.369 6.369 17 Si 0.676 3.324 18 C -0.175 4.175 19 C -0.097 4.097 20 H 0.094 0.906 21 H 0.099 0.901 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.246 0.754 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.147 0.853 31 H 0.109 0.891 32 H 0.245 0.755 33 H -0.212 1.212 34 H -0.223 1.223 35 H 0.160 0.840 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.252 -1.098 -2.008 2.608 hybrid contribution 0.658 1.067 0.506 1.352 sum -0.594 -0.031 -1.501 1.615 Atomic orbital electron populations 1.20631 0.89252 1.03183 1.02892 1.19657 0.97679 0.90381 1.04997 1.19041 0.90487 0.86217 0.97528 1.86034 1.36195 1.12429 1.88545 1.22886 0.94005 0.81965 1.01612 1.22290 0.99220 0.91509 0.99226 0.87275 1.23084 0.99439 0.93770 0.99759 1.23382 0.96605 0.88163 0.90129 0.88177 1.86481 1.41101 1.65947 1.45459 1.23724 1.02743 0.96884 0.96439 1.21162 0.92762 0.99390 1.07768 1.19282 0.94033 0.93179 0.99019 1.25118 0.93721 1.11810 0.89290 1.86549 1.28149 1.83547 1.38644 0.93956 0.77407 0.73860 0.87185 1.21137 0.95016 0.97300 1.04012 1.21167 0.93585 0.97821 0.97140 0.90622 0.90081 0.92007 0.91841 0.91670 0.89358 0.89673 0.75424 0.90012 0.90267 0.85297 0.89076 0.75491 1.21164 1.22305 0.83953 0.82333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.13 9.79 71.23 0.70 0.57 16 2 C -0.13 -0.62 5.89 -19.77 -0.12 -0.74 16 3 C 0.11 0.81 6.66 22.51 0.15 0.96 16 4 O -0.32 -2.02 9.18 -92.49 -0.85 -2.87 16 5 C 0.07 0.16 4.58 71.98 0.33 0.49 16 6 C -0.10 0.04 4.01 -10.27 -0.04 0.00 16 7 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 8 C -0.12 0.07 7.47 31.12 0.23 0.30 16 9 C 0.08 -0.08 5.21 31.12 0.16 0.08 16 10 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 11 O -0.58 -0.88 13.67 -148.98 -2.04 -2.91 16 12 C -0.16 0.11 7.47 31.12 0.23 0.34 16 13 C -0.19 -1.29 8.67 22.37 0.19 -1.10 16 14 C -0.05 -0.29 5.38 -19.88 -0.11 -0.39 16 15 C -0.09 -0.15 2.79 71.24 0.20 0.05 16 16 O -0.56 -2.35 12.81 -148.98 -1.91 -4.26 16 17 Si 0.77 -0.72 29.85 68.60 2.05 1.33 16 18 C -0.16 -0.48 8.67 22.28 0.19 -0.29 16 19 C -0.08 -0.18 9.70 22.25 0.22 0.04 16 20 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 21 H 0.08 -0.15 8.09 -2.38 -0.02 -0.17 16 22 H 0.06 0.19 7.53 -2.39 -0.02 0.17 16 23 H 0.06 0.14 7.66 -2.39 -0.02 0.13 16 24 H 0.07 0.12 7.37 -2.38 -0.02 0.10 16 25 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.08 0.09 8.10 -2.39 -0.02 0.07 16 27 H 0.40 -2.63 9.12 -74.05 -0.68 -3.31 16 28 H 0.08 0.10 7.90 -2.39 -0.02 0.08 16 29 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.13 0.70 6.30 -2.91 -0.02 0.68 16 31 H 0.09 -0.19 7.96 -2.39 -0.02 -0.20 16 32 H 0.39 -1.65 8.74 -74.05 -0.65 -2.30 16 33 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 34 H -0.30 -1.74 7.04 99.48 0.70 -1.04 16 35 H 0.14 -0.12 4.86 -2.91 -0.01 -0.13 16 36 H 0.16 -0.56 8.06 -2.91 -0.02 -0.58 16 Total: 0.00 -15.37 298.35 -0.60 -15.97 By element: Atomic # 1 Polarization: -7.36 SS G_CDS: -0.20 Total: -7.56 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 2.34 Total: 0.31 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -4.79 Total: -10.05 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.05 Total: 1.33 kcal Total: -15.37 -0.60 -15.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13826624_11354860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.764 kcal (2) G-P(sol) polarization free energy of solvation -15.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds