Wall clock time and date at job start Mon Mar 8 2021 07:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38129 * 120.02532 * 2 1 4 4 C 1.38284 * 120.05099 * 180.28087 * 3 2 1 5 5 C 1.38234 * 120.11922 * 359.76793 * 4 3 2 6 6 C 1.50698 * 119.97821 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47472 * 120.02263 * 6 5 4 8 8 Si 1.86303 * 109.46840 * 0.02562 * 6 5 4 9 9 H 1.48505 * 109.46798 * 60.00773 * 8 6 5 10 10 H 1.48504 * 109.46865 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47472 * 300.00687 * 8 6 5 12 12 C 1.38172 * 120.05113 * 359.97438 * 5 4 3 13 13 C 1.38705 * 119.94580 * 359.97438 * 12 5 4 14 14 O 1.35898 * 120.05844 * 180.02562 * 13 12 5 15 15 C 1.42905 * 116.99816 * 0.02562 * 14 13 12 16 16 C 1.50701 * 109.47046 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00243 * 89.99998 * 16 15 14 18 18 C 1.38234 * 120.00240 * 180.02562 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 20 20 Si 1.86796 * 120.00338 * 179.72477 * 19 18 17 21 21 C 1.86298 * 109.47345 * 89.99399 * 20 19 18 22 22 C 1.86292 * 109.47215 * 209.99657 * 20 19 18 23 23 C 1.86304 * 109.46695 * 329.99459 * 20 19 18 24 24 C 1.38238 * 119.99752 * 359.47832 * 19 18 17 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 19 18 26 26 H 1.08999 * 109.47186 * 270.22237 * 1 2 3 27 27 H 1.08997 * 109.47269 * 30.22789 * 1 2 3 28 28 H 1.09005 * 109.46557 * 150.22761 * 1 2 3 29 29 H 1.07995 * 119.97029 * 0.02562 * 3 2 1 30 30 H 1.08006 * 119.94049 * 179.74856 * 4 3 2 31 31 H 1.09003 * 109.47191 * 240.02348 * 6 5 4 32 32 H 0.96700 * 114.00013 * 300.00242 * 7 6 5 33 33 H 1.08007 * 120.02538 * 180.02562 * 12 5 4 34 34 H 1.08996 * 109.47095 * 59.99628 * 15 14 13 35 35 H 1.08999 * 109.47350 * 299.99563 * 15 14 13 36 36 H 1.07999 * 119.99751 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.99744 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47461 * 60.00145 * 21 20 19 39 39 H 1.08995 * 109.47041 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.46941 * 300.00096 * 21 20 19 41 41 H 1.08997 * 109.47556 * 59.99827 * 22 20 19 42 42 H 1.09003 * 109.47107 * 179.97438 * 22 20 19 43 43 H 1.09001 * 109.47298 * 299.99936 * 22 20 19 44 44 H 1.09004 * 109.47045 * 60.00345 * 23 20 19 45 45 H 1.09003 * 109.47110 * 180.02562 * 23 20 19 46 46 H 1.09000 * 109.47158 * 300.00133 * 23 20 19 47 47 H 1.07999 * 119.99927 * 180.24100 * 24 19 18 48 48 H 1.08001 * 120.00310 * 179.72165 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5810 1.1966 -0.0059 5 6 4.2752 0.0012 -0.0069 6 6 5.7822 0.0056 -0.0139 7 8 6.2659 -0.6650 1.1516 8 14 6.3980 1.7639 -0.0192 9 1 5.9066 2.4640 1.1948 10 1 7.8830 1.7682 -0.0254 11 1 5.8952 2.4608 -1.2301 12 6 3.5885 -1.1978 -0.0015 13 6 2.2015 -1.2012 0.0054 14 8 1.5237 -2.3791 0.0112 15 6 2.3038 -3.5765 0.0103 16 6 1.3876 -4.7729 0.0179 17 6 0.9614 -5.3247 -1.1757 18 6 0.1205 -6.4219 -1.1687 19 6 -0.2985 -6.9640 0.0319 20 14 -1.4409 -8.4419 0.0414 21 6 -0.4311 -10.0074 0.0443 22 6 -2.5107 -8.3900 1.5656 23 6 -2.5203 -8.4020 -1.4766 24 6 0.1320 -6.4155 1.2255 25 6 0.9729 -5.3183 1.2186 26 1 -0.3633 0.0040 1.0276 27 1 -0.3634 0.8879 -0.5174 28 1 -0.3632 -0.8921 -0.5103 29 1 1.6582 2.1311 0.0004 30 1 4.1196 2.1327 -0.0100 31 1 6.1429 -0.5085 -0.9048 32 1 5.9833 -0.2611 1.9835 33 1 4.1313 -2.1315 -0.0019 34 1 2.9368 -3.5983 0.8974 35 1 2.9285 -3.6025 -0.8825 36 1 1.2847 -4.8981 -2.1137 37 1 -0.2128 -6.8527 -2.1013 38 1 0.2005 -10.0308 0.9324 39 1 -1.0977 -10.8697 0.0494 40 1 0.1948 -10.0377 -0.8475 41 1 -3.1015 -7.4741 1.5640 42 1 -3.1776 -9.2522 1.5709 43 1 -1.8791 -8.4133 2.4538 44 1 -1.8943 -8.4324 -2.3684 45 1 -3.1873 -9.2641 -1.4709 46 1 -3.1111 -7.4860 -1.4783 47 1 -0.1922 -6.8414 2.1635 48 1 1.3056 -4.8870 2.1511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13826624_9403676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:26:18 Heat of formation + Delta-G solvation = -63.059057 kcal Electronic energy + Delta-G solvation = -25067.067326 eV Core-core repulsion = 21596.444977 eV Total energy + Delta-G solvation = -3470.622349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52268 -40.11842 -38.87761 -37.47448 -34.09572 -32.96378 -31.90009 -31.02902 -29.44381 -29.16260 -28.29835 -28.27356 -27.48802 -25.24273 -23.64242 -23.50231 -22.31596 -21.75328 -19.02933 -18.36583 -17.60629 -17.12519 -16.90207 -16.59125 -16.18161 -15.94763 -15.86695 -15.59833 -15.01589 -14.62507 -14.41348 -14.33146 -14.29956 -14.06717 -14.04314 -13.79671 -13.73426 -13.49629 -13.35209 -13.14227 -13.11970 -12.98391 -12.96738 -12.84374 -12.56370 -12.48865 -12.20850 -12.13314 -11.93307 -11.81899 -11.58097 -10.92707 -10.78931 -10.76242 -10.47247 -9.82644 -9.80597 -9.70389 -9.18557 0.14440 0.16683 0.34107 0.50258 1.15280 1.45503 1.51604 1.82861 1.89377 1.99465 2.02206 2.30529 2.59720 2.66241 3.00607 3.42768 3.62146 3.67934 3.78086 3.87541 3.91345 4.06187 4.14698 4.18995 4.21260 4.37670 4.51168 4.52670 4.59336 4.67715 4.69515 4.76208 4.84448 4.84511 4.85305 4.88352 4.89071 4.89451 4.90508 4.98176 5.14168 5.18950 5.24223 5.36186 5.38288 5.44110 5.55212 5.58378 5.58944 5.67688 5.70231 5.74007 6.10445 6.33113 6.64633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.127 4.127 3 C -0.079 4.079 4 C -0.166 4.166 5 C -0.090 4.090 6 C -0.083 4.083 7 O -0.552 6.552 8 Si 0.989 3.011 9 H -0.250 1.250 10 H -0.276 1.276 11 H -0.256 1.256 12 C -0.186 4.186 13 C 0.114 3.886 14 O -0.318 6.318 15 C 0.101 3.899 16 C -0.102 4.102 17 C -0.122 4.122 18 C -0.103 4.103 19 C -0.373 4.373 20 Si 1.127 2.873 21 C -0.462 4.462 22 C -0.462 4.462 23 C -0.462 4.462 24 C -0.103 4.103 25 C -0.122 4.122 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.389 0.611 33 H 0.136 0.864 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.140 0.860 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -0.661 0.153 1.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.127 4.127 3 C -0.097 4.097 4 C -0.184 4.184 5 C -0.090 4.090 6 C -0.193 4.193 7 O -0.359 6.359 8 Si 0.813 3.187 9 H -0.174 1.174 10 H -0.201 1.201 11 H -0.180 1.180 12 C -0.204 4.204 13 C 0.068 3.932 14 O -0.232 6.232 15 C 0.027 3.973 16 C -0.102 4.102 17 C -0.140 4.140 18 C -0.121 4.121 19 C -0.412 4.412 20 Si 1.315 2.685 21 C -0.568 4.568 22 C -0.570 4.570 23 C -0.570 4.570 24 C -0.120 4.120 25 C -0.140 4.140 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.171 0.829 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.238 0.762 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.158 0.842 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.044 -0.179 -0.291 1.099 hybrid contribution 0.080 0.006 0.340 0.350 sum -0.965 -0.173 0.049 0.981 Atomic orbital electron populations 1.20619 0.89712 1.03059 1.02636 1.19605 0.97396 0.90513 1.05216 1.21120 0.93809 0.97582 0.97210 1.21149 0.95039 0.97565 1.04658 1.20234 0.96548 0.92861 0.99395 1.25112 0.90961 1.11129 0.92124 1.86474 1.75526 1.57767 1.16160 0.85116 0.78571 0.73624 0.81405 1.17404 1.20124 1.17969 1.21151 0.92284 0.99648 1.07350 1.19067 0.90787 0.85858 0.97451 1.86132 1.36236 1.12288 1.88563 1.21686 0.92376 0.80455 1.02800 1.19608 1.00155 0.96057 0.94425 1.21364 0.98093 0.97106 0.97475 1.21393 0.96132 0.95237 0.99291 1.28089 1.07250 1.12131 0.93760 0.77167 0.63521 0.61730 0.66128 1.26273 1.09596 1.16534 1.04435 1.26279 1.10193 1.04683 1.15805 1.26281 1.10289 1.04677 1.15710 1.21394 0.96092 0.95203 0.99360 1.21364 0.98127 0.97125 0.97393 0.91043 0.90023 0.92286 0.82854 0.84745 0.85948 0.76216 0.84640 0.90512 0.90515 0.85619 0.84209 0.91375 0.90597 0.91382 0.91393 0.90574 0.90903 0.90904 0.90575 0.91391 0.84211 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.25 9.79 71.24 0.70 0.45 16 2 C -0.13 -0.61 5.89 -19.77 -0.12 -0.72 16 3 C -0.08 -0.15 9.70 22.25 0.22 0.07 16 4 C -0.17 -0.29 8.67 22.28 0.19 -0.10 16 5 C -0.09 -0.24 5.39 -19.88 -0.11 -0.34 16 6 C -0.08 -0.01 2.82 71.24 0.20 0.19 16 7 O -0.55 -0.71 12.77 -148.98 -1.90 -2.61 16 8 Si 0.99 -0.89 25.07 68.60 1.72 0.83 16 9 H -0.25 0.27 7.11 99.48 0.71 0.98 16 10 H -0.28 -0.69 7.11 99.48 0.71 0.01 16 11 H -0.26 0.02 7.11 99.48 0.71 0.73 16 12 C -0.19 -0.84 8.60 22.37 0.19 -0.65 16 13 C 0.11 0.73 6.66 22.50 0.15 0.88 16 14 O -0.32 -2.34 9.17 -92.40 -0.85 -3.19 16 15 C 0.10 0.37 4.87 71.24 0.35 0.71 16 16 C -0.10 -0.49 5.51 -19.86 -0.11 -0.60 16 17 C -0.12 -0.47 9.70 22.27 0.22 -0.25 16 18 C -0.10 -0.16 9.29 22.27 0.21 0.05 16 19 C -0.37 -0.06 4.59 22.27 0.10 0.04 16 20 Si 1.13 -6.02 12.32 68.60 0.85 -5.17 16 21 C -0.46 1.60 8.65 113.37 0.98 2.58 16 22 C -0.46 1.81 8.54 113.37 0.97 2.77 16 23 C -0.46 1.81 8.53 113.37 0.97 2.78 16 24 C -0.10 -0.16 9.29 22.27 0.21 0.05 16 25 C -0.12 -0.47 9.70 22.27 0.22 -0.25 16 26 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.08 -0.08 8.09 -2.39 -0.02 -0.10 16 28 H 0.06 0.29 7.53 -2.38 -0.02 0.27 16 29 H 0.15 -0.48 8.06 -2.91 -0.02 -0.50 16 30 H 0.14 -0.20 4.87 -2.91 -0.01 -0.22 16 31 H 0.12 -0.16 7.96 -2.39 -0.02 -0.18 16 32 H 0.39 -1.90 8.70 -74.06 -0.64 -2.55 16 33 H 0.14 0.41 6.30 -2.91 -0.02 0.40 16 34 H 0.08 0.15 7.61 -2.39 -0.02 0.13 16 35 H 0.08 0.13 7.61 -2.39 -0.02 0.11 16 36 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 37 H 0.14 -0.40 7.43 -2.91 -0.02 -0.42 16 38 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 39 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 40 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 41 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 42 H 0.08 -0.34 7.96 -2.39 -0.02 -0.35 16 43 H 0.07 -0.31 7.69 -2.39 -0.02 -0.33 16 44 H 0.07 -0.31 7.69 -2.38 -0.02 -0.33 16 45 H 0.08 -0.34 7.96 -2.39 -0.02 -0.35 16 46 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 47 H 0.14 -0.39 7.44 -2.91 -0.02 -0.42 16 48 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 Total: 0.00 -12.74 393.80 6.39 -6.35 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: 1.05 Total: -3.87 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.53 Total: 7.66 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -2.75 Total: -5.80 kcal Atomic # 14 Polarization: -6.90 SS G_CDS: 2.56 Total: -4.34 kcal Total: -12.74 6.39 -6.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13826624_9403676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.710 kcal (2) G-P(sol) polarization free energy of solvation -12.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds