Wall clock time and date at job start Mon Mar 8 2021 07:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47368 * 2 1 4 4 C 1.50701 * 109.47279 * 120.00623 * 2 1 3 5 5 C 1.38242 * 119.97536 * 119.99683 * 4 2 1 6 6 C 1.38291 * 120.10967 * 179.97438 * 5 4 2 7 7 C 1.50696 * 119.96908 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47131 * 299.99529 * 7 6 5 9 9 Si 1.86305 * 109.47185 * 180.02562 * 7 6 5 10 10 H 1.48499 * 109.47126 * 179.97438 * 9 7 6 11 11 H 1.48496 * 109.46885 * 299.99843 * 9 7 6 12 12 H 1.48499 * 109.46850 * 59.99646 * 9 7 6 13 13 C 1.38119 * 120.05515 * 0.27750 * 6 5 4 14 14 C 1.38748 * 119.94566 * 359.47112 * 13 6 5 15 15 O 1.35906 * 120.05797 * 180.25049 * 14 13 6 16 16 C 1.42902 * 116.99670 * 0.25310 * 15 14 13 17 17 C 1.52997 * 109.46708 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47216 * 65.00362 * 17 16 15 19 19 Si 1.63105 * 113.99841 * 179.97438 * 18 17 16 20 20 C 1.86291 * 109.47221 * 300.00013 * 19 18 17 21 21 C 1.86300 * 109.47051 * 60.00047 * 19 18 17 22 22 C 1.86304 * 109.46821 * 179.97438 * 19 18 17 23 23 C 1.52999 * 109.46870 * 60.00337 * 22 19 18 24 24 C 1.53002 * 109.46828 * 179.97438 * 22 19 18 25 25 C 1.52993 * 109.47388 * 300.00132 * 22 19 18 26 26 C 1.38173 * 119.96643 * 299.97842 * 4 2 1 27 27 H 1.09002 * 109.47376 * 299.99608 * 1 2 3 28 28 H 1.09001 * 109.46975 * 60.00138 * 1 2 3 29 29 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47376 * 240.00392 * 2 1 3 31 31 H 1.09002 * 109.46552 * 59.99888 * 3 2 1 32 32 H 1.08997 * 109.47355 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47120 * 300.00574 * 3 2 1 34 34 H 1.08001 * 119.94419 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.47358 * 59.99889 * 7 6 5 36 36 H 0.96700 * 114.00311 * 300.00591 * 8 7 6 37 37 H 1.08002 * 120.02706 * 179.72216 * 13 6 5 38 38 H 1.08999 * 109.47243 * 300.00231 * 16 15 14 39 39 H 1.08998 * 109.47188 * 60.00376 * 16 15 14 40 40 H 1.08999 * 109.46856 * 185.00255 * 17 16 15 41 41 H 1.08999 * 109.47554 * 305.00119 * 17 16 15 42 42 H 1.08996 * 109.47318 * 60.00304 * 20 19 18 43 43 H 1.09009 * 109.47090 * 179.97438 * 20 19 18 44 44 H 1.08997 * 109.47330 * 299.99665 * 20 19 18 45 45 H 1.09007 * 109.47246 * 59.99896 * 21 19 18 46 46 H 1.09001 * 109.47333 * 179.97438 * 21 19 18 47 47 H 1.09004 * 109.47378 * 299.99810 * 21 19 18 48 48 H 1.08998 * 109.47178 * 59.99835 * 23 22 19 49 49 H 1.09002 * 109.46894 * 179.97438 * 23 22 19 50 50 H 1.08995 * 109.47469 * 299.99467 * 23 22 19 51 51 H 1.09004 * 109.46994 * 60.00189 * 24 22 19 52 52 H 1.08993 * 109.47236 * 180.02562 * 24 22 19 53 53 H 1.08998 * 109.47414 * 300.00283 * 24 22 19 54 54 H 1.09001 * 109.47062 * 59.99990 * 25 22 19 55 55 H 1.08996 * 109.47222 * 179.97438 * 25 22 19 56 56 H 1.09004 * 109.47067 * 300.00199 * 25 22 19 57 57 H 1.07996 * 120.02544 * 359.97362 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8270 -1.8345 1.1028 6 6 3.2900 -2.4884 2.2300 7 6 4.1565 -3.7129 2.0873 8 8 3.4410 -4.7221 1.3718 9 14 4.6094 -4.3537 3.7770 10 1 5.4628 -5.5608 3.6363 11 1 5.3527 -3.3053 4.5210 12 1 3.3731 -4.7060 4.5204 13 6 2.9545 -2.0230 3.4864 14 6 2.1614 -0.8921 3.6172 15 8 1.8341 -0.4293 4.8524 16 6 2.3460 -1.1533 5.9730 17 6 1.8750 -0.4884 7.2679 18 8 0.4534 -0.5933 7.3676 19 14 -0.1689 0.0830 8.7150 20 6 0.5504 -0.7510 10.2175 21 6 0.2522 1.8974 8.7506 22 6 -2.0204 -0.1243 8.7156 23 6 -2.3667 -1.6142 8.6862 24 6 -2.6041 0.5096 9.9800 25 6 -2.6107 0.5611 7.4817 26 6 1.6985 -0.2378 2.4851 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9562 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 3.0874 -2.2020 0.1212 35 1 5.0638 -3.4545 1.5411 36 1 2.6206 -5.0014 1.8007 37 1 3.3126 -2.5367 4.3664 38 1 1.9822 -2.1802 5.9391 39 1 3.4354 -1.1525 5.9392 40 1 2.3367 -0.9861 8.1207 41 1 2.1622 0.5631 7.2618 42 1 1.6336 -0.6293 10.2170 43 1 0.1349 -0.2987 11.1181 44 1 0.3040 -1.8125 10.1968 45 1 -0.1687 2.3855 7.8714 46 1 -0.1640 2.3495 9.6508 47 1 1.3355 2.0191 8.7500 48 1 -1.9462 -2.1025 9.5653 49 1 -3.4500 -1.7355 8.6870 50 1 -1.9509 -2.0662 7.7857 51 1 -2.3573 1.5711 10.0014 52 1 -3.6872 0.3880 9.9806 53 1 -2.1835 0.0210 10.8588 54 1 -2.1948 0.1091 6.5812 55 1 -3.6939 0.4394 7.4819 56 1 -2.3639 1.6226 7.5027 57 1 1.0782 0.6408 2.5841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13973558_10902662.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:56:32 Heat of formation + Delta-G solvation = -154.711054 kcal Electronic energy + Delta-G solvation = -30640.151238 eV Core-core repulsion = 26737.626453 eV Total energy + Delta-G solvation = -3902.524784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.219 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.46460 -39.47228 -37.98182 -37.70727 -36.84048 -35.75481 -32.31136 -30.91937 -30.17963 -29.32003 -29.07289 -27.99712 -27.84830 -27.39389 -26.92684 -24.70085 -23.47092 -22.78190 -20.59918 -20.38724 -19.15872 -18.08879 -17.79582 -17.37425 -17.21919 -16.52584 -16.15212 -16.09556 -15.81964 -15.60687 -15.57961 -15.12440 -14.86480 -14.79944 -14.74965 -14.56924 -14.35994 -14.06997 -13.90739 -13.54678 -13.40671 -13.30984 -13.19012 -13.15812 -13.05888 -12.97175 -12.96257 -12.93559 -12.71115 -12.41587 -12.29111 -12.17329 -12.07149 -11.93796 -11.81726 -11.74917 -11.73237 -11.70709 -11.58667 -11.51409 -11.27287 -10.41687 -10.33120 -10.06543 -9.77700 -9.17281 0.18660 0.41802 1.12733 1.40293 1.46073 1.50555 1.77082 1.86201 2.12001 2.17535 2.46372 2.64313 3.44625 3.56276 3.66288 3.90222 3.93901 3.99628 4.05305 4.10919 4.11559 4.22852 4.28997 4.29685 4.35879 4.39142 4.41194 4.45732 4.53819 4.61886 4.70671 4.74136 4.76809 4.77832 4.78817 4.79643 4.81003 4.81747 4.87006 4.98295 4.98530 5.03915 5.07793 5.08017 5.14406 5.18443 5.22918 5.30409 5.32468 5.36772 5.39258 5.40878 5.41685 5.47234 5.58649 5.63699 5.67161 5.76448 6.41649 6.66233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.037 4.037 5 C -0.136 4.136 6 C -0.079 4.079 7 C -0.079 4.079 8 O -0.550 6.550 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.250 1.250 12 H -0.252 1.252 13 C -0.228 4.228 14 C 0.129 3.871 15 O -0.317 6.317 16 C 0.042 3.958 17 C 0.076 3.924 18 O -0.638 6.638 19 Si 1.313 2.687 20 C -0.515 4.515 21 C -0.518 4.518 22 C -0.383 4.383 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.154 4.154 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.388 0.612 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.047 0.953 50 H 0.053 0.947 51 H 0.062 0.938 52 H 0.049 0.951 53 H 0.065 0.935 54 H 0.051 0.949 55 H 0.047 0.953 56 H 0.058 0.942 57 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 0.563 1.975 2.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.037 4.037 5 C -0.154 4.154 6 C -0.079 4.079 7 C -0.190 4.190 8 O -0.356 6.356 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.174 1.174 12 H -0.176 1.176 13 C -0.247 4.247 14 C 0.083 3.917 15 O -0.231 6.231 16 C -0.033 4.033 17 C 0.001 3.999 18 O -0.598 6.598 19 Si 1.443 2.557 20 C -0.617 4.617 21 C -0.619 4.619 22 C -0.425 4.425 23 C -0.193 4.193 24 C -0.197 4.197 25 C -0.193 4.193 26 C -0.173 4.173 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.237 0.763 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.081 0.919 52 H 0.068 0.932 53 H 0.084 0.916 54 H 0.070 0.930 55 H 0.066 0.934 56 H 0.077 0.923 57 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.089 0.351 2.216 3.065 hybrid contribution -0.730 0.223 0.434 0.878 sum 1.359 0.574 2.649 3.032 Atomic orbital electron populations 1.21855 0.93791 1.02004 1.02477 1.20197 0.96346 0.96338 0.94589 1.21856 1.01115 0.94630 1.02502 1.19881 0.95121 0.94518 0.94166 1.20952 0.99828 0.95767 0.98874 1.20173 0.97934 0.97259 0.92558 1.25033 0.97331 0.87089 1.09498 1.86485 1.41037 1.55982 1.52133 0.85423 0.80623 0.79755 0.74973 1.19499 1.17400 1.17558 1.21189 1.05392 0.99749 0.98340 1.19031 0.94317 0.92968 0.85371 1.86131 1.71303 1.53539 1.12131 1.23313 0.99196 0.96717 0.84036 1.22352 0.79681 1.01910 0.95973 1.85398 1.23735 1.84132 1.66491 0.76248 0.62984 0.61886 0.54534 1.27044 1.07762 1.08704 1.18185 1.27113 1.05606 1.24554 1.04664 1.25929 1.20745 0.98081 0.97776 1.21532 1.01349 0.94616 1.01826 1.21598 1.01007 1.00757 0.96361 1.21519 1.00589 1.00248 0.96925 1.20379 1.04592 1.02521 0.89812 0.92656 0.91241 0.92858 0.89440 0.92611 0.92697 0.91261 0.84853 0.85469 0.76292 0.84927 0.90847 0.88979 0.87685 0.90610 0.90578 0.90292 0.90956 0.91631 0.90359 0.90951 0.91827 0.93409 0.92819 0.91887 0.93188 0.91598 0.92976 0.93356 0.92259 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.02 9.01 71.98 0.65 0.67 16 2 C -0.06 -0.01 3.09 -11.54 -0.04 -0.05 16 3 C -0.14 0.09 9.01 71.98 0.65 0.74 16 4 C -0.04 -0.12 4.78 -19.88 -0.10 -0.21 16 5 C -0.14 -0.41 9.23 22.28 0.21 -0.21 16 6 C -0.08 -0.19 5.39 -19.88 -0.11 -0.30 16 7 C -0.08 0.02 2.82 71.23 0.20 0.22 16 8 O -0.55 -0.56 12.77 -148.98 -1.90 -2.46 16 9 Si 0.97 -0.87 25.07 68.60 1.72 0.85 16 10 H -0.27 -0.57 7.11 99.48 0.71 0.13 16 11 H -0.25 0.26 7.11 99.48 0.71 0.97 16 12 H -0.25 0.20 7.11 99.48 0.71 0.91 16 13 C -0.23 -0.75 7.66 22.36 0.17 -0.57 16 14 C 0.13 0.73 6.69 22.51 0.15 0.88 16 15 O -0.32 -1.82 10.10 -87.85 -0.89 -2.71 16 16 C 0.04 -0.01 5.12 71.98 0.37 0.36 16 17 C 0.08 -0.19 5.50 71.98 0.40 0.20 16 18 O -0.64 -0.73 8.52 -144.34 -1.23 -1.96 16 19 Si 1.31 -3.02 8.45 68.60 0.58 -2.44 16 20 C -0.51 1.74 8.50 113.37 0.96 2.71 16 21 C -0.52 0.71 8.50 113.37 0.96 1.67 16 22 C -0.38 -0.07 0.53 -10.80 -0.01 -0.08 16 23 C -0.14 -0.14 7.84 71.98 0.56 0.43 16 24 C -0.14 0.14 7.85 71.98 0.56 0.71 16 25 C -0.14 -0.29 7.85 71.98 0.56 0.28 16 26 C -0.15 -0.78 8.65 22.37 0.19 -0.59 16 27 H 0.05 0.04 7.39 -2.39 -0.02 0.02 16 28 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.09 -0.09 7.87 -2.39 -0.02 -0.11 16 31 H 0.05 0.01 7.39 -2.39 -0.02 -0.01 16 32 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.13 0.20 7.94 -2.91 -0.02 0.18 16 35 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.39 -1.86 8.70 -74.06 -0.64 -2.51 16 37 H 0.13 0.03 3.12 -2.91 -0.01 0.02 16 38 H 0.07 -0.05 7.65 -2.39 -0.02 -0.07 16 39 H 0.09 -0.41 7.67 -2.39 -0.02 -0.43 16 40 H 0.11 -0.90 7.21 -2.39 -0.02 -0.91 16 41 H 0.08 -0.33 7.21 -2.39 -0.02 -0.34 16 42 H 0.08 -0.39 7.48 -2.39 -0.02 -0.41 16 43 H 0.08 -0.30 7.79 -2.38 -0.02 -0.32 16 44 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 45 H 0.06 0.03 7.79 -2.38 -0.02 0.01 16 46 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 47 H 0.07 -0.19 7.48 -2.38 -0.02 -0.20 16 48 H 0.06 -0.07 7.80 -2.39 -0.02 -0.09 16 49 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 50 H 0.05 0.12 7.96 -2.39 -0.02 0.10 16 51 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 52 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 53 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 54 H 0.05 0.20 7.97 -2.39 -0.02 0.18 16 55 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 56 H 0.06 0.05 7.79 -2.39 -0.02 0.03 16 57 H 0.13 0.56 7.10 -2.91 -0.02 0.54 16 Total: 0.00 -10.97 441.68 5.56 -5.41 By element: Atomic # 1 Polarization: -4.46 SS G_CDS: 0.92 Total: -3.54 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 6.36 Total: 6.85 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -4.02 Total: -7.13 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.30 Total: -1.59 kcal Total: -10.97 5.56 -5.41 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13973558_10902662.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.300 kcal (2) G-P(sol) polarization free energy of solvation -10.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds