Wall clock time and date at job start Mon Mar 8 2021 08:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47123 * 2 1 4 4 C 1.50701 * 109.47381 * 119.99950 * 2 1 3 5 5 C 1.38126 * 119.96946 * 299.97929 * 4 2 1 6 6 C 1.38749 * 119.94135 * 180.02562 * 5 4 2 7 7 O 1.35901 * 120.05761 * 179.97438 * 6 5 4 8 8 C 1.42894 * 117.00403 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47308 * 180.02562 * 8 7 6 10 10 H 1.08997 * 112.84921 * 45.33560 * 9 8 7 11 11 C 1.53783 * 113.61392 * 176.53251 * 9 8 7 12 12 C 1.53779 * 87.08140 * 139.97962 * 11 9 8 13 13 H 1.08999 * 113.61301 * 89.20050 * 12 11 9 14 14 O 1.42902 * 113.61710 * 220.01932 * 12 11 9 15 15 C 1.53784 * 113.61358 * 274.13803 * 9 8 7 16 16 C 1.38714 * 119.89136 * 359.97438 * 6 5 4 17 17 C 1.38165 * 119.94333 * 0.02562 * 16 6 5 18 18 C 1.50699 * 119.97587 * 180.02562 * 17 16 6 19 19 O 1.42899 * 109.47351 * 245.01928 * 18 17 16 20 20 Si 1.86304 * 109.46865 * 5.01794 * 18 17 16 21 21 C 1.38245 * 120.05645 * 0.02562 * 17 16 6 22 22 H 1.09002 * 109.46717 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47361 * 299.99742 * 1 2 3 24 24 H 1.08996 * 109.47133 * 60.00345 * 1 2 3 25 25 H 1.09000 * 109.47361 * 240.00258 * 2 1 3 26 26 H 1.09000 * 109.47735 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47099 * 300.00330 * 3 2 1 28 28 H 1.08997 * 109.47498 * 59.99733 * 3 2 1 29 29 H 1.07998 * 120.03163 * 359.97438 * 5 4 2 30 30 H 1.09001 * 109.47642 * 300.00576 * 8 7 6 31 31 H 1.09007 * 109.46669 * 60.00451 * 8 7 6 32 32 H 1.08999 * 113.61419 * 254.53124 * 11 9 8 33 33 H 1.09004 * 113.61743 * 25.43147 * 11 9 8 34 34 H 0.96694 * 113.99672 * 180.02562 * 14 12 11 35 35 H 1.08997 * 113.61765 * 334.56935 * 15 9 8 36 36 H 1.08998 * 113.61409 * 105.47011 * 15 9 8 37 37 H 1.08001 * 120.03097 * 179.97438 * 16 6 5 38 38 H 1.09000 * 109.47353 * 125.01528 * 18 17 16 39 39 H 0.96705 * 113.99647 * 59.99865 * 19 18 17 40 40 H 1.48504 * 109.99642 * 58.68408 * 20 18 17 41 41 H 1.48497 * 109.99992 * 179.97438 * 20 18 17 42 42 H 1.07995 * 119.94685 * 179.70646 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6987 -0.2377 2.4847 6 6 2.1620 -0.8919 3.6172 7 8 1.8356 -0.4285 4.8523 8 6 2.3484 -1.1517 5.9730 9 6 1.8782 -0.4862 7.2680 10 1 0.8196 -0.2272 7.2506 11 6 2.3075 -1.2389 8.5385 12 6 2.5815 0.1378 9.1666 13 1 1.7158 0.5680 9.6702 14 8 3.7649 0.1767 9.9667 15 6 2.7862 0.6640 7.7344 16 6 2.9590 -2.0197 3.4866 17 6 3.2899 -2.4885 2.2297 18 6 4.1553 -3.7140 2.0870 19 8 5.3953 -3.3530 1.4754 20 14 4.4820 -4.4429 3.7701 21 6 2.8280 -1.8343 1.1029 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.0784 0.6408 2.5838 30 1 1.9848 -2.1788 5.9400 31 1 3.4379 -1.1507 5.9384 32 1 1.4949 -1.7840 9.0186 33 1 3.2041 -1.8443 8.4054 34 1 3.9423 1.0399 10.3647 35 1 3.8139 0.5798 7.3810 36 1 2.3595 1.6528 7.5663 37 1 3.3212 -2.5304 4.3666 38 1 3.6441 -4.4494 1.4656 39 1 5.9049 -2.7005 1.9750 40 1 3.1984 -4.7932 4.4297 41 1 5.3339 -5.6526 3.6431 42 1 3.0916 -2.1995 0.1214 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_13973558_11354860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:16:57 Heat of formation + Delta-G solvation = -81.758645 kcal Electronic energy + Delta-G solvation = -22013.630451 eV Core-core repulsion = 18732.862558 eV Total energy + Delta-G solvation = -3280.767892 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.155 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53114 -40.44849 -39.00980 -37.94280 -36.17526 -35.68478 -32.09980 -30.69760 -29.25520 -28.05937 -26.85808 -26.82963 -24.45682 -23.40883 -22.77566 -20.74132 -20.53693 -18.94492 -18.58930 -17.64853 -17.25558 -17.12428 -16.98628 -16.39332 -16.08835 -15.70975 -15.51600 -15.20975 -14.81611 -14.59970 -14.36808 -14.18330 -14.03153 -13.54337 -13.38982 -13.17484 -13.06396 -12.99417 -12.71316 -12.47123 -12.30919 -12.09609 -12.01713 -11.95745 -11.78056 -11.71142 -11.60780 -11.29509 -10.82233 -10.43014 -9.75394 -9.14478 -5.09880 0.22597 0.46145 1.24845 1.58058 1.92558 2.07945 2.67438 3.16474 3.36960 3.41101 3.46067 3.56997 3.62619 3.72729 3.82354 3.94072 3.98780 4.11518 4.14636 4.24320 4.27055 4.33111 4.37187 4.42792 4.52925 4.54015 4.65419 4.68026 4.69032 4.72083 4.83874 4.88725 4.91686 5.01595 5.04174 5.09624 5.24766 5.26855 5.28383 5.30911 5.44243 5.68311 5.76287 6.42092 6.54279 6.63781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.035 4.035 5 C -0.142 4.142 6 C 0.140 3.860 7 O -0.310 6.310 8 C 0.068 3.932 9 C -0.110 4.110 10 H 0.105 0.895 11 C -0.121 4.121 12 C 0.076 3.924 13 H 0.084 0.916 14 O -0.560 6.560 15 C -0.163 4.163 16 C -0.211 4.211 17 C -0.077 4.077 18 C -0.067 4.067 19 O -0.537 6.537 20 Si 0.678 3.322 21 C -0.128 4.128 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.132 0.868 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.381 0.619 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.379 0.621 40 H -0.257 1.257 41 H -0.251 1.251 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 2.909 1.869 3.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.203 4.203 4 C -0.035 4.035 5 C -0.161 4.161 6 C 0.094 3.906 7 O -0.224 6.224 8 C -0.007 4.007 9 C -0.128 4.128 10 H 0.123 0.877 11 C -0.158 4.158 12 C 0.017 3.983 13 H 0.102 0.898 14 O -0.365 6.365 15 C -0.200 4.200 16 C -0.230 4.230 17 C -0.078 4.078 18 C -0.178 4.178 19 O -0.343 6.343 20 Si 0.580 3.420 21 C -0.147 4.147 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.228 0.772 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.226 0.774 40 H -0.181 1.181 41 H -0.176 1.176 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.700 1.310 1.835 2.361 hybrid contribution -0.361 0.398 -0.297 0.614 sum -1.060 1.709 1.538 2.532 Atomic orbital electron populations 1.21875 0.93951 1.02198 1.02290 1.20178 0.96235 0.96283 0.94945 1.21869 1.01385 0.94738 1.02264 1.19719 0.95343 0.94458 0.93980 1.20263 1.04232 1.02132 0.89438 1.18827 0.94204 0.92518 0.85013 1.86078 1.70927 1.53487 1.11905 1.22865 0.98665 0.95450 0.83737 1.22324 1.01189 0.97602 0.91677 0.87664 1.23076 1.02376 0.96334 0.94056 1.23322 0.88068 0.97445 0.89477 0.89795 1.86521 1.44049 1.37694 1.68280 1.23798 1.00727 0.98732 0.96781 1.21014 1.05112 0.99389 0.97459 1.20045 0.97917 0.97033 0.92777 1.25041 0.85847 0.97413 1.09517 1.86513 1.30957 1.64745 1.52052 0.94889 0.83854 0.84219 0.79005 1.20826 0.99235 0.96146 0.98459 0.92467 0.92267 0.92033 0.90049 0.92353 0.92064 0.92280 0.85040 0.91729 0.91321 0.90127 0.88678 0.77185 0.88950 0.90747 0.85355 0.86740 0.77376 1.18139 1.17608 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.06 9.01 37.16 0.33 0.40 16 2 C -0.06 0.01 3.09 -91.77 -0.28 -0.28 16 3 C -0.15 0.08 9.00 37.16 0.33 0.42 16 4 C -0.03 -0.04 4.78 -104.64 -0.50 -0.54 16 5 C -0.14 -0.23 8.65 -39.43 -0.34 -0.57 16 6 C 0.14 0.26 6.69 -39.22 -0.26 0.00 16 7 O -0.31 -0.52 10.14 -19.43 -0.20 -0.72 16 8 C 0.07 -0.04 4.56 37.16 0.17 0.13 16 9 C -0.11 0.14 4.00 -89.80 -0.36 -0.22 16 10 H 0.11 -0.14 8.14 -51.93 -0.42 -0.56 16 11 C -0.12 0.16 7.47 -25.92 -0.19 -0.03 16 12 C 0.08 -0.09 5.21 -25.83 -0.13 -0.23 16 13 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 14 O -0.56 -0.02 13.67 -35.23 -0.48 -0.50 16 15 C -0.16 0.21 7.48 -25.83 -0.19 0.02 16 16 C -0.21 -0.20 7.66 -39.43 -0.30 -0.50 16 17 C -0.08 -0.09 5.35 -104.65 -0.56 -0.65 16 18 C -0.07 -0.04 2.80 36.01 0.10 0.07 16 19 O -0.54 -0.43 12.83 -35.23 -0.45 -0.88 16 20 Si 0.68 -0.20 29.80 -169.99 -5.07 -5.26 16 21 C -0.13 -0.19 9.31 -39.56 -0.37 -0.56 16 22 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 23 H 0.06 -0.02 7.39 -51.93 -0.38 -0.41 16 24 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 25 H 0.08 -0.03 7.87 -51.93 -0.41 -0.44 16 26 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 27 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.06 -0.03 7.38 -51.93 -0.38 -0.41 16 29 H 0.13 0.11 7.10 -52.49 -0.37 -0.26 16 30 H 0.06 -0.07 7.66 -51.93 -0.40 -0.46 16 31 H 0.07 -0.11 7.40 -51.92 -0.38 -0.50 16 32 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 33 H 0.09 -0.11 8.10 -51.93 -0.42 -0.53 16 34 H 0.38 -1.47 9.12 45.56 0.42 -1.05 16 35 H 0.09 -0.08 7.92 -51.93 -0.41 -0.49 16 36 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 37 H 0.13 -0.10 3.15 -52.49 -0.17 -0.26 16 38 H 0.12 0.09 7.96 -51.93 -0.41 -0.32 16 39 H 0.38 -1.11 8.70 45.56 0.40 -0.71 16 40 H -0.26 -0.49 7.11 56.52 0.40 -0.09 16 41 H -0.25 -0.68 7.11 56.52 0.40 -0.28 16 42 H 0.13 0.13 7.94 -52.49 -0.42 -0.28 16 LS Contribution 338.56 15.07 5.10 5.10 Total: 0.00 -5.85 338.56 -9.58 -15.43 By element: Atomic # 1 Polarization: -4.70 SS G_CDS: -5.93 Total: -10.63 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.56 Total: -2.54 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: -1.13 Total: -2.10 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -5.07 Total: -5.26 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -5.85 -9.58 -15.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13973558_11354860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.330 kcal (2) G-P(sol) polarization free energy of solvation -5.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds