Wall clock time and date at job start Mon Mar 8 2021 08:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47123 * 2 1 4 4 C 1.50701 * 109.47381 * 119.99950 * 2 1 3 5 5 C 1.38126 * 119.96946 * 299.97929 * 4 2 1 6 6 C 1.38749 * 119.94135 * 180.02562 * 5 4 2 7 7 O 1.35901 * 120.05761 * 179.97438 * 6 5 4 8 8 C 1.42894 * 117.00403 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47308 * 180.02562 * 8 7 6 10 10 H 1.08997 * 112.84921 * 45.33560 * 9 8 7 11 11 C 1.53783 * 113.61392 * 176.53251 * 9 8 7 12 12 C 1.53779 * 87.08140 * 139.97962 * 11 9 8 13 13 H 1.08999 * 113.61301 * 89.20050 * 12 11 9 14 14 O 1.42902 * 113.61710 * 220.01932 * 12 11 9 15 15 C 1.53784 * 113.61358 * 274.13803 * 9 8 7 16 16 C 1.38714 * 119.89136 * 359.97438 * 6 5 4 17 17 C 1.38165 * 119.94333 * 0.02562 * 16 6 5 18 18 C 1.50699 * 119.97587 * 180.02562 * 17 16 6 19 19 O 1.42899 * 109.47351 * 245.01928 * 18 17 16 20 20 Si 1.86304 * 109.46865 * 5.01794 * 18 17 16 21 21 C 1.38245 * 120.05645 * 0.02562 * 17 16 6 22 22 H 1.09002 * 109.46717 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47361 * 299.99742 * 1 2 3 24 24 H 1.08996 * 109.47133 * 60.00345 * 1 2 3 25 25 H 1.09000 * 109.47361 * 240.00258 * 2 1 3 26 26 H 1.09000 * 109.47735 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47099 * 300.00330 * 3 2 1 28 28 H 1.08997 * 109.47498 * 59.99733 * 3 2 1 29 29 H 1.07998 * 120.03163 * 359.97438 * 5 4 2 30 30 H 1.09001 * 109.47642 * 300.00576 * 8 7 6 31 31 H 1.09007 * 109.46669 * 60.00451 * 8 7 6 32 32 H 1.08999 * 113.61419 * 254.53124 * 11 9 8 33 33 H 1.09004 * 113.61743 * 25.43147 * 11 9 8 34 34 H 0.96694 * 113.99672 * 180.02562 * 14 12 11 35 35 H 1.08997 * 113.61765 * 334.56935 * 15 9 8 36 36 H 1.08998 * 113.61409 * 105.47011 * 15 9 8 37 37 H 1.08001 * 120.03097 * 179.97438 * 16 6 5 38 38 H 1.09000 * 109.47353 * 125.01528 * 18 17 16 39 39 H 0.96705 * 113.99647 * 59.99865 * 19 18 17 40 40 H 1.48504 * 109.99642 * 58.68408 * 20 18 17 41 41 H 1.48497 * 109.99992 * 179.97438 * 20 18 17 42 42 H 1.07995 * 119.94685 * 179.70646 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6987 -0.2377 2.4847 6 6 2.1620 -0.8919 3.6172 7 8 1.8356 -0.4285 4.8523 8 6 2.3484 -1.1517 5.9730 9 6 1.8782 -0.4862 7.2680 10 1 0.8196 -0.2272 7.2506 11 6 2.3075 -1.2389 8.5385 12 6 2.5815 0.1378 9.1666 13 1 1.7158 0.5680 9.6702 14 8 3.7649 0.1767 9.9667 15 6 2.7862 0.6640 7.7344 16 6 2.9590 -2.0197 3.4866 17 6 3.2899 -2.4885 2.2297 18 6 4.1553 -3.7140 2.0870 19 8 5.3953 -3.3530 1.4754 20 14 4.4820 -4.4429 3.7701 21 6 2.8280 -1.8343 1.1029 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.0784 0.6408 2.5838 30 1 1.9848 -2.1788 5.9400 31 1 3.4379 -1.1507 5.9384 32 1 1.4949 -1.7840 9.0186 33 1 3.2041 -1.8443 8.4054 34 1 3.9423 1.0399 10.3647 35 1 3.8139 0.5798 7.3810 36 1 2.3595 1.6528 7.5663 37 1 3.3212 -2.5304 4.3666 38 1 3.6441 -4.4494 1.4656 39 1 5.9049 -2.7005 1.9750 40 1 3.1984 -4.7932 4.4297 41 1 5.3339 -5.6526 3.6431 42 1 3.0916 -2.1995 0.1214 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13973558_11354860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:16:56 Heat of formation + Delta-G solvation = -78.359401 kcal Electronic energy + Delta-G solvation = -22013.483048 eV Core-core repulsion = 18732.862558 eV Total energy + Delta-G solvation = -3280.620490 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56636 -40.37450 -39.02495 -37.97263 -36.11760 -35.68631 -32.14377 -30.73896 -29.21567 -28.01918 -26.91014 -26.70619 -24.45362 -23.38146 -22.80444 -20.68292 -20.49771 -18.96931 -18.51021 -17.68724 -17.27221 -17.17951 -16.97609 -16.32652 -16.10012 -15.67836 -15.55367 -15.20294 -14.79374 -14.58428 -14.38125 -14.24136 -14.04803 -13.43049 -13.37313 -13.17337 -13.10276 -12.96374 -12.63267 -12.42687 -12.27319 -12.11673 -12.08216 -11.96680 -11.76992 -11.66468 -11.60605 -11.19069 -10.71210 -10.47432 -9.81771 -9.22500 -5.11295 0.15642 0.37204 1.22178 1.53536 1.86494 2.08383 2.60075 3.32095 3.40176 3.47962 3.54256 3.59478 3.63931 3.82807 3.92380 3.97211 3.99680 4.20229 4.24421 4.25368 4.26853 4.34462 4.35355 4.39616 4.51853 4.57931 4.72204 4.77762 4.79281 4.82530 4.83006 4.96090 4.99783 5.01650 5.11718 5.15589 5.19725 5.26939 5.34661 5.37836 5.40100 5.63386 5.71380 6.37992 6.69402 6.89672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.036 4.036 5 C -0.152 4.152 6 C 0.130 3.870 7 O -0.322 6.322 8 C 0.061 3.939 9 C -0.106 4.106 10 H 0.106 0.894 11 C -0.123 4.123 12 C 0.074 3.926 13 H 0.096 0.904 14 O -0.580 6.580 15 C -0.161 4.161 16 C -0.214 4.214 17 C -0.079 4.079 18 C -0.072 4.072 19 O -0.551 6.551 20 Si 0.759 3.241 21 C -0.141 4.141 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.135 0.865 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.395 0.605 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.395 0.605 40 H -0.283 1.283 41 H -0.292 1.292 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 3.286 2.107 3.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.200 4.200 4 C -0.036 4.036 5 C -0.171 4.171 6 C 0.084 3.916 7 O -0.236 6.236 8 C -0.013 4.013 9 C -0.124 4.124 10 H 0.124 0.876 11 C -0.160 4.160 12 C 0.015 3.985 13 H 0.114 0.886 14 O -0.389 6.389 15 C -0.199 4.199 16 C -0.232 4.232 17 C -0.080 4.080 18 C -0.182 4.182 19 O -0.359 6.359 20 Si 0.665 3.335 21 C -0.159 4.159 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.245 0.755 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.245 0.755 40 H -0.210 1.210 41 H -0.219 1.219 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.684 1.726 2.074 2.784 hybrid contribution -0.353 0.270 -0.370 0.578 sum -1.037 1.996 1.704 2.822 Atomic orbital electron populations 1.21862 0.93690 1.01936 1.02656 1.20201 0.96414 0.96461 0.94487 1.21849 1.01107 0.94457 1.02612 1.19858 0.95068 0.94370 0.94342 1.20394 1.04560 1.02451 0.89670 1.18985 0.94481 0.92876 0.85228 1.86062 1.71250 1.54049 1.12225 1.23045 0.99375 0.95585 0.83319 1.22291 1.01175 0.97590 0.91368 0.87617 1.23099 1.02478 0.96435 0.93995 1.23420 0.88143 0.97518 0.89426 0.88628 1.86476 1.44603 1.39195 1.68587 1.23766 1.00423 0.98796 0.96871 1.21145 1.04940 0.99260 0.97895 1.20132 0.97908 0.97139 0.92813 1.25149 0.85824 0.97174 1.10068 1.86476 1.31093 1.65460 1.52891 0.93944 0.80628 0.81841 0.77088 1.20957 0.99676 0.96524 0.98728 0.93027 0.92360 0.91199 0.89786 0.92745 0.91279 0.92356 0.84740 0.91330 0.90276 0.89513 0.88968 0.75519 0.89453 0.90638 0.83969 0.87282 0.75549 1.21013 1.21928 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.11 9.01 71.98 0.65 0.76 16 2 C -0.06 0.01 3.09 -11.54 -0.04 -0.03 16 3 C -0.14 0.17 9.00 71.98 0.65 0.82 16 4 C -0.04 -0.10 4.78 -19.88 -0.10 -0.19 16 5 C -0.15 -0.56 8.65 22.37 0.19 -0.36 16 6 C 0.13 0.52 6.69 22.51 0.15 0.67 16 7 O -0.32 -1.14 10.14 -92.44 -0.94 -2.07 16 8 C 0.06 -0.08 4.56 71.98 0.33 0.25 16 9 C -0.11 0.29 4.00 -10.27 -0.04 0.25 16 10 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 11 C -0.12 0.37 7.47 31.12 0.23 0.60 16 12 C 0.07 -0.20 5.21 31.18 0.16 -0.04 16 13 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 14 O -0.58 0.10 13.67 -148.98 -2.04 -1.94 16 15 C -0.16 0.43 7.48 31.18 0.23 0.67 16 16 C -0.21 -0.41 7.66 22.37 0.17 -0.24 16 17 C -0.08 -0.20 5.35 -19.88 -0.11 -0.30 16 18 C -0.07 -0.09 2.80 71.24 0.20 0.11 16 19 O -0.55 -0.83 12.83 -148.98 -1.91 -2.74 16 20 Si 0.76 -0.37 29.80 68.60 2.04 1.67 16 21 C -0.14 -0.48 9.31 22.28 0.21 -0.28 16 22 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 23 H 0.06 -0.03 7.39 -2.39 -0.02 -0.05 16 24 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.08 -0.06 7.87 -2.39 -0.02 -0.08 16 26 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 28 H 0.06 -0.06 7.38 -2.39 -0.02 -0.07 16 29 H 0.13 0.31 7.10 -2.91 -0.02 0.29 16 30 H 0.07 -0.15 7.66 -2.39 -0.02 -0.17 16 31 H 0.08 -0.29 7.40 -2.38 -0.02 -0.31 16 32 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.09 -0.22 8.10 -2.39 -0.02 -0.24 16 34 H 0.39 -3.13 9.12 -74.06 -0.68 -3.80 16 35 H 0.09 -0.14 7.92 -2.39 -0.02 -0.16 16 36 H 0.07 -0.23 8.14 -2.39 -0.02 -0.24 16 37 H 0.14 -0.27 3.15 -2.91 -0.01 -0.27 16 38 H 0.11 0.23 7.96 -2.39 -0.02 0.21 16 39 H 0.39 -2.48 8.70 -74.05 -0.64 -3.12 16 40 H -0.28 -1.13 7.11 99.48 0.71 -0.42 16 41 H -0.29 -1.83 7.11 99.48 0.71 -1.12 16 42 H 0.13 0.34 7.94 -2.91 -0.02 0.32 16 Total: 0.00 -13.12 338.56 -0.21 -13.32 By element: Atomic # 1 Polarization: -10.66 SS G_CDS: -0.26 Total: -10.92 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 2.90 Total: 2.67 kcal Atomic # 8 Polarization: -1.86 SS G_CDS: -4.89 Total: -6.75 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: 2.04 Total: 1.67 kcal Total: -13.12 -0.21 -13.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13973558_11354860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.035 kcal (2) G-P(sol) polarization free energy of solvation -13.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds