Wall clock time and date at job start Mon Mar 8 2021 11:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.50699 * 109.46940 * 119.99933 * 2 1 3 5 5 C 1.38119 * 119.97499 * 299.97839 * 4 2 1 6 6 C 1.38759 * 119.94381 * 180.02562 * 5 4 2 7 7 O 1.35899 * 120.05238 * 179.97438 * 6 5 4 8 8 C 1.42904 * 116.99763 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47069 * 180.02562 * 8 7 6 10 10 H 1.08999 * 112.85082 * 314.67055 * 9 8 7 11 11 C 1.53784 * 113.61679 * 85.86467 * 9 8 7 12 12 C 1.53954 * 87.01925 * 139.94979 * 11 9 8 13 13 H 1.09005 * 113.60984 * 89.20071 * 12 11 9 14 14 O 1.42900 * 113.66753 * 220.06859 * 12 11 9 15 15 C 1.42899 * 113.99776 * 247.56448 * 14 12 11 16 16 C 1.52999 * 109.47519 * 59.99806 * 15 14 12 17 17 C 1.52998 * 109.46997 * 179.97438 * 15 14 12 18 18 C 1.53000 * 109.47149 * 299.99384 * 15 14 12 19 19 C 1.53782 * 87.11244 * 334.63744 * 12 11 9 20 20 C 1.38708 * 119.89010 * 0.02562 * 6 5 4 21 21 C 1.38171 * 119.94045 * 0.02562 * 20 6 5 22 22 C 1.50702 * 119.96884 * 179.97438 * 21 20 6 23 23 O 1.42897 * 109.47122 * 245.00001 * 22 21 20 24 24 Si 1.86302 * 109.47048 * 4.99957 * 22 21 20 25 25 C 1.38245 * 120.05709 * 359.97438 * 21 20 6 26 26 H 1.08999 * 109.47455 * 300.00013 * 1 2 3 27 27 H 1.09002 * 109.47233 * 59.99557 * 1 2 3 28 28 H 1.09004 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47256 * 240.00359 * 2 1 3 30 30 H 1.09002 * 109.47478 * 300.00293 * 3 2 1 31 31 H 1.09007 * 109.46851 * 60.00029 * 3 2 1 32 32 H 1.08994 * 109.47358 * 179.97438 * 3 2 1 33 33 H 1.08001 * 120.02616 * 0.02562 * 5 4 2 34 34 H 1.08999 * 109.47100 * 300.00366 * 8 7 6 35 35 H 1.08995 * 109.47050 * 60.00161 * 8 7 6 36 36 H 1.08993 * 113.61412 * 254.53021 * 11 9 8 37 37 H 1.09004 * 113.61155 * 25.42899 * 11 9 8 38 38 H 1.09006 * 109.47212 * 60.00026 * 16 15 14 39 39 H 1.09004 * 109.47269 * 179.97438 * 16 15 14 40 40 H 1.08999 * 109.46925 * 300.00269 * 16 15 14 41 41 H 1.09003 * 109.47390 * 59.99701 * 17 15 14 42 42 H 1.09004 * 109.47473 * 179.97438 * 17 15 14 43 43 H 1.09003 * 109.47853 * 300.00052 * 17 15 14 44 44 H 1.09004 * 109.46719 * 60.00613 * 18 15 14 45 45 H 1.08993 * 109.47208 * 180.02562 * 18 15 14 46 46 H 1.08991 * 109.47073 * 300.00541 * 18 15 14 47 47 H 1.08991 * 113.61354 * 270.80882 * 19 12 11 48 48 H 1.09005 * 113.68958 * 139.91957 * 19 12 11 49 49 H 1.07998 * 120.02711 * 180.02562 * 20 6 5 50 50 H 1.09004 * 109.47111 * 124.99778 * 22 21 20 51 51 H 0.96705 * 114.00065 * 179.97438 * 23 22 21 52 52 H 1.48507 * 109.99894 * 178.67820 * 24 22 21 53 53 H 1.48497 * 110.00035 * 299.99630 * 24 22 21 54 54 H 1.08000 * 119.93675 * 180.27435 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6986 -0.2378 2.4847 6 6 2.1619 -0.8921 3.6172 7 8 1.8354 -0.4287 4.8523 8 6 2.3472 -1.1527 5.9731 9 6 1.8772 -0.4871 7.2680 10 1 1.9856 0.5974 7.2500 11 6 0.4905 -0.9598 7.7356 12 6 1.0559 -0.9414 9.1674 13 1 0.9389 0.0185 9.6706 14 8 0.6256 -2.0439 9.9683 15 6 -0.2381 -1.6772 11.0460 16 6 -1.4951 -1.0074 10.4872 17 6 -0.6342 -2.9294 11.8309 18 6 0.4897 -0.7022 11.9738 19 6 2.4447 -1.1420 8.5384 20 6 2.9597 -2.0193 3.4866 21 6 3.2915 -2.4874 2.2296 22 6 4.1586 -3.7116 2.0870 23 8 5.3980 -3.3488 1.4752 24 14 4.4866 -4.4399 3.7701 25 6 2.8286 -1.8337 1.1029 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8899 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.1299 1.4426 0.0005 33 1 1.0777 0.6403 2.5838 34 1 1.9827 -2.1794 5.9396 35 1 3.4366 -1.1527 5.9388 36 1 -0.2997 -0.2282 7.5677 37 1 0.2274 -1.9571 7.3828 38 1 -2.0136 -1.7020 9.8262 39 1 -2.1541 -0.7281 11.3093 40 1 -1.2133 -0.1154 9.9278 41 1 0.2611 -3.4070 12.2290 42 1 -1.2927 -2.6497 12.6533 43 1 -1.1528 -3.6238 11.1698 44 1 0.7714 0.1899 11.4144 45 1 -0.1689 -0.4229 12.7961 46 1 1.3851 -1.1794 12.3719 47 1 2.7168 -2.1890 8.4057 48 1 3.2308 -0.5578 9.0169 49 1 3.3211 -2.5305 4.3666 50 1 3.6485 -4.4478 1.4657 51 1 6.0076 -4.0893 1.3522 52 1 5.3144 -5.6660 3.6405 53 1 5.1819 -3.4460 4.6268 54 1 3.0855 -2.2039 0.1213 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13973558_14598386.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:08:57 Heat of formation + Delta-G solvation = -74.836729 kcal Electronic energy + Delta-G solvation = -29556.755954 eV Core-core repulsion = 25654.137743 eV Total energy + Delta-G solvation = -3902.618211 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.218 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.57207 -40.81498 -39.36309 -38.14896 -37.94930 -35.91962 -33.90252 -32.22732 -30.73918 -29.38229 -28.34368 -28.25851 -28.00231 -26.89782 -26.60851 -24.48346 -23.47418 -22.76751 -20.93910 -20.63419 -20.32998 -18.77743 -18.62552 -17.84638 -17.37631 -17.19696 -16.97818 -16.53752 -16.00127 -15.81186 -15.69951 -15.44299 -15.25158 -14.86834 -14.56286 -14.51038 -14.36186 -14.26040 -13.95259 -13.58037 -13.50318 -13.42207 -13.27659 -13.08814 -13.05002 -13.01456 -12.87446 -12.78298 -12.64600 -12.49070 -12.36246 -12.20216 -12.04919 -11.93227 -11.83908 -11.75880 -11.63651 -11.49340 -11.33831 -11.16651 -10.54279 -10.34230 -9.80996 -9.21269 -5.03261 0.15703 0.38462 1.20377 1.49461 1.83976 2.07326 2.56596 2.76456 3.27947 3.47590 3.57034 3.57861 3.71447 3.78199 3.83244 3.92179 3.92776 3.99452 4.01489 4.10425 4.13627 4.18549 4.23557 4.28108 4.28719 4.34466 4.37831 4.51673 4.55664 4.62239 4.63300 4.70335 4.78949 4.79348 4.79773 4.80850 4.84095 4.86716 4.93119 4.95746 4.97707 5.01336 5.03424 5.12737 5.14160 5.18623 5.21401 5.27851 5.32897 5.34774 5.36546 5.39626 5.40960 5.63608 5.72113 6.36969 6.43575 6.53866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.038 4.038 5 C -0.152 4.152 6 C 0.129 3.871 7 O -0.321 6.321 8 C 0.064 3.936 9 C -0.104 4.104 10 H 0.105 0.895 11 C -0.145 4.145 12 C 0.061 3.939 13 H 0.099 0.901 14 O -0.379 6.379 15 C 0.098 3.902 16 C -0.174 4.174 17 C -0.139 4.139 18 C -0.177 4.177 19 C -0.125 4.125 20 C -0.219 4.219 21 C -0.042 4.042 22 C -0.083 4.083 23 O -0.555 6.555 24 Si 0.745 3.255 25 C -0.139 4.139 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.138 0.862 50 H 0.099 0.901 51 H 0.396 0.604 52 H -0.277 1.277 53 H -0.296 1.296 54 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 -0.808 1.342 3.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.038 4.038 5 C -0.170 4.170 6 C 0.083 3.917 7 O -0.234 6.234 8 C -0.011 4.011 9 C -0.122 4.122 10 H 0.124 0.876 11 C -0.183 4.183 12 C 0.003 3.997 13 H 0.117 0.883 14 O -0.299 6.299 15 C 0.060 3.940 16 C -0.231 4.231 17 C -0.196 4.196 18 C -0.235 4.235 19 C -0.163 4.163 20 C -0.237 4.237 21 C -0.043 4.043 22 C -0.192 4.192 23 O -0.365 6.365 24 Si 0.650 3.350 25 C -0.158 4.158 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.155 0.845 50 H 0.117 0.883 51 H 0.246 0.754 52 H -0.203 1.203 53 H -0.223 1.223 54 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.392 -0.485 1.974 3.138 hybrid contribution 1.219 -0.067 -0.682 1.398 sum -1.173 -0.552 1.291 1.830 Atomic orbital electron populations 1.21852 0.93290 1.02228 1.02624 1.20196 0.96711 0.96153 0.94374 1.21863 1.00812 0.94808 1.02685 1.19880 0.95073 0.94385 0.94438 1.20399 1.04593 1.02437 0.89606 1.18964 0.94508 0.92861 0.85332 1.86057 1.71256 1.53956 1.12180 1.22999 0.98560 0.96039 0.83460 1.22270 0.97518 1.01205 0.91256 0.87639 1.23606 0.96580 1.02211 0.95894 1.23677 0.94954 0.91071 0.89995 0.88305 1.88009 1.66045 1.32976 1.42845 1.21668 0.89682 0.95772 0.86914 1.22446 0.97785 1.00893 1.02005 1.21793 1.01918 0.96194 0.99745 1.22452 1.01385 0.99400 1.00227 1.23225 0.96734 1.02306 0.93992 1.21147 1.05166 0.99306 0.98057 1.19189 0.96251 0.96013 0.92797 1.24950 0.86314 0.98199 1.09767 1.86551 1.28133 1.40003 1.81785 0.94307 0.88313 0.76576 0.75780 1.20974 0.99602 0.96509 0.98679 0.92406 0.91197 0.92563 0.89613 0.91042 0.92402 0.93277 0.84560 0.90458 0.91871 0.90874 0.89571 0.92320 0.90663 0.92150 0.92270 0.89844 0.92275 0.91902 0.90482 0.92173 0.88929 0.89632 0.84467 0.88317 0.75378 1.20340 1.22326 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.11 9.01 71.98 0.65 0.76 16 2 C -0.06 -0.04 3.09 -11.54 -0.04 -0.08 16 3 C -0.14 -0.06 9.01 71.98 0.65 0.59 16 4 C -0.04 -0.17 4.78 -19.88 -0.10 -0.26 16 5 C -0.15 -0.85 8.65 22.37 0.19 -0.66 16 6 C 0.13 0.86 6.69 22.51 0.15 1.01 16 7 O -0.32 -1.91 10.14 -92.41 -0.94 -2.85 16 8 C 0.06 0.09 4.57 71.98 0.33 0.42 16 9 C -0.10 0.07 4.00 -10.27 -0.04 0.03 16 10 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 11 C -0.15 0.00 7.48 31.18 0.23 0.24 16 12 C 0.06 -0.01 2.82 31.18 0.09 0.08 16 13 H 0.10 -0.19 5.54 -2.38 -0.01 -0.20 16 14 O -0.38 -1.28 10.00 -148.98 -1.49 -2.77 16 15 C 0.10 0.02 1.11 -10.79 -0.01 0.01 16 16 C -0.17 0.22 8.38 71.98 0.60 0.82 16 17 C -0.14 0.09 8.84 71.98 0.64 0.72 16 18 C -0.18 0.30 8.38 71.98 0.60 0.90 16 19 C -0.13 0.16 7.47 31.12 0.23 0.40 16 20 C -0.22 -1.19 7.66 22.37 0.17 -1.02 16 21 C -0.04 -0.23 5.38 -19.88 -0.11 -0.33 16 22 C -0.08 -0.13 2.79 71.24 0.20 0.07 16 23 O -0.55 -2.08 12.81 -148.98 -1.91 -3.99 16 24 Si 0.75 0.15 29.85 68.60 2.05 2.20 16 25 C -0.14 -0.73 9.31 22.28 0.21 -0.53 16 26 H 0.06 -0.02 7.39 -2.39 -0.02 -0.04 16 27 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.09 -0.02 7.87 -2.39 -0.02 -0.04 16 30 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.06 0.04 7.39 -2.38 -0.02 0.02 16 32 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.14 0.52 7.10 -2.91 -0.02 0.50 16 34 H 0.08 -0.05 7.40 -2.39 -0.02 -0.07 16 35 H 0.06 0.08 7.66 -2.39 -0.02 0.06 16 36 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.09 0.11 7.92 -2.39 -0.02 0.09 16 38 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 39 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 40 H 0.06 -0.09 7.02 -2.39 -0.02 -0.11 16 41 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.08 -0.29 8.14 -2.38 -0.02 -0.30 16 43 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.06 -0.15 6.24 -2.39 -0.01 -0.17 16 45 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.09 -0.08 8.10 -2.39 -0.02 -0.09 16 48 H 0.09 -0.25 8.14 -2.38 -0.02 -0.27 16 49 H 0.14 0.36 3.11 -2.91 -0.01 0.35 16 50 H 0.10 -0.27 7.96 -2.38 -0.02 -0.29 16 51 H 0.40 -1.86 8.74 -74.05 -0.65 -2.50 16 52 H -0.28 -0.89 7.11 99.48 0.71 -0.19 16 53 H -0.30 -2.08 7.05 99.48 0.70 -1.38 16 54 H 0.13 0.44 7.94 -2.91 -0.02 0.41 16 Total: 0.00 -12.09 417.74 2.61 -9.48 By element: Atomic # 1 Polarization: -5.49 SS G_CDS: 0.24 Total: -5.25 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.65 Total: 3.17 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -4.34 Total: -9.60 kcal Atomic # 14 Polarization: 0.15 SS G_CDS: 2.05 Total: 2.20 kcal Total: -12.09 2.61 -9.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13973558_14598386.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.358 kcal (2) G-P(sol) polarization free energy of solvation -12.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds