Wall clock time and date at job start Mon Mar 8 2021 07:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47322 * 2 1 4 4 C 1.50702 * 109.47117 * 119.99769 * 2 1 3 5 5 C 1.38126 * 119.96965 * 300.00018 * 4 2 1 6 6 C 1.38759 * 119.94113 * 179.97438 * 5 4 2 7 7 O 1.35895 * 120.05370 * 180.02562 * 6 5 4 8 8 C 1.42904 * 116.99994 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47259 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47280 * 305.00473 * 9 8 7 11 11 C 1.53000 * 109.47027 * 65.00175 * 9 8 7 12 12 C 1.52998 * 109.47027 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47162 * 300.00310 * 12 11 9 14 14 H 1.08995 * 109.46602 * 299.99719 * 13 12 11 15 15 O 1.42903 * 109.46807 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47039 * 59.99923 * 13 12 11 17 17 C 1.52995 * 109.47148 * 185.00519 * 9 8 7 18 18 C 1.38709 * 119.88803 * 359.97438 * 6 5 4 19 19 C 1.38164 * 119.94688 * 0.02562 * 18 6 5 20 20 C 1.50699 * 119.97605 * 180.02562 * 19 18 6 21 21 O 1.42902 * 109.47060 * 244.98059 * 20 19 18 22 22 Si 1.86303 * 109.47019 * 4.97787 * 20 19 18 23 23 C 1.38245 * 120.05645 * 0.02562 * 19 18 6 24 24 H 1.09006 * 109.47312 * 60.00145 * 1 2 3 25 25 H 1.09000 * 109.47331 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47723 * 300.00448 * 1 2 3 27 27 H 1.09001 * 109.47476 * 240.00011 * 2 1 3 28 28 H 1.08999 * 109.47593 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46808 * 300.00163 * 3 2 1 30 30 H 1.08998 * 109.47542 * 59.99443 * 3 2 1 31 31 H 1.07998 * 120.03128 * 0.02562 * 5 4 2 32 32 H 1.08993 * 109.47211 * 300.00419 * 8 7 6 33 33 H 1.09003 * 109.46242 * 60.00708 * 8 7 6 34 34 H 1.08997 * 109.47041 * 299.99989 * 11 9 8 35 35 H 1.08998 * 109.47199 * 60.00337 * 11 9 8 36 36 H 1.09000 * 109.46995 * 179.97438 * 12 11 9 37 37 H 1.09003 * 109.47280 * 60.00298 * 12 11 9 38 38 H 0.96696 * 114.00558 * 59.99604 * 15 13 12 39 39 H 1.08998 * 109.47137 * 179.97438 * 16 13 12 40 40 H 1.09003 * 109.47031 * 60.00240 * 16 13 12 41 41 H 1.08998 * 109.47065 * 299.99654 * 17 9 8 42 42 H 1.09000 * 109.47480 * 59.99920 * 17 9 8 43 43 H 1.08001 * 120.02763 * 179.97438 * 18 6 5 44 44 H 1.08999 * 109.47509 * 124.97556 * 20 19 18 45 45 H 0.96699 * 113.99543 * 179.97438 * 21 20 19 46 46 H 1.48506 * 109.99701 * 300.00401 * 22 20 19 47 47 H 1.48499 * 109.99763 * 61.31634 * 22 20 19 48 48 H 1.07995 * 119.94685 * 179.72562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6982 -0.2379 2.4847 6 6 2.1606 -0.8927 3.6173 7 8 1.8329 -0.4301 4.8524 8 6 2.3439 -1.1546 5.9731 9 6 1.8725 -0.4899 7.2680 10 1 2.1601 0.5615 7.2623 11 6 0.3503 -0.6016 7.3738 12 6 -0.1212 0.0637 8.6684 13 6 0.5260 -0.6350 9.8659 14 1 0.2384 -1.6863 9.8721 15 8 0.0852 -0.0139 11.0751 16 6 2.0482 -0.5233 9.7601 17 6 2.5197 -1.1891 8.4651 18 6 2.9570 -2.0209 3.4867 19 6 3.2883 -2.4895 2.2299 20 6 4.1531 -3.7154 2.0872 21 8 5.3932 -3.3550 1.4755 22 14 4.4795 -4.4443 3.7704 23 6 2.8273 -1.8347 1.1030 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.0770 0.6400 2.5838 32 1 1.9797 -2.1813 5.9387 33 1 3.4334 -1.1542 5.9398 34 1 -0.1107 -0.1034 6.5210 35 1 0.0626 -1.6529 7.3796 36 1 -1.2057 -0.0154 8.7435 37 1 0.1664 1.1151 8.6622 38 1 -0.8720 -0.0474 11.2082 39 1 2.5093 -1.0206 10.6134 40 1 2.3358 0.5281 9.7539 41 1 2.2320 -2.2404 8.4709 42 1 3.6041 -1.1095 8.3898 43 1 3.3185 -2.5320 4.3667 44 1 3.6416 -4.4506 1.4660 45 1 6.0013 -4.0968 1.3526 46 1 5.1766 -3.4517 4.6272 47 1 3.2000 -4.8524 4.4039 48 1 3.0910 -2.1999 0.1215 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_13973558_16737256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:50:31 Heat of formation + Delta-G solvation = -122.475031 kcal Electronic energy + Delta-G solvation = -25952.164361 eV Core-core repulsion = 22358.555636 eV Total energy + Delta-G solvation = -3593.608725 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52600 -40.28684 -39.07668 -37.89832 -36.81332 -35.84904 -32.58360 -31.92468 -31.43849 -30.50325 -28.05439 -27.29868 -26.34782 -24.10712 -23.92382 -22.85366 -22.29299 -20.98659 -20.38538 -18.81108 -18.45479 -18.23188 -17.45874 -17.22504 -17.07324 -16.42900 -15.72435 -15.60257 -15.53138 -15.35508 -15.06501 -14.86342 -14.70490 -14.41125 -14.31979 -14.04435 -13.81577 -13.45908 -13.37027 -13.30828 -13.08301 -12.96587 -12.84512 -12.55506 -12.48427 -12.23658 -12.14526 -12.06464 -11.87353 -11.77488 -11.75664 -11.61775 -11.45913 -11.19040 -10.77244 -10.36757 -9.75477 -9.15318 -5.05458 0.20490 0.45298 1.20310 1.55329 1.88447 2.08000 2.62852 3.10200 3.30610 3.51391 3.55517 3.61786 3.66443 3.79838 3.90629 3.95366 3.98536 4.04784 4.11373 4.20745 4.23441 4.24750 4.25393 4.31175 4.35648 4.38750 4.41128 4.45785 4.53486 4.62711 4.69801 4.72503 4.82928 4.86398 4.92133 4.95726 5.00092 5.01834 5.06681 5.06868 5.09116 5.22731 5.24637 5.27140 5.31734 5.33617 5.44000 5.66797 5.74632 6.39095 6.57619 6.66762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.034 4.034 5 C -0.142 4.142 6 C 0.141 3.859 7 O -0.308 6.308 8 C 0.061 3.939 9 C -0.087 4.087 10 H 0.087 0.913 11 C -0.111 4.111 12 C -0.152 4.152 13 C 0.103 3.897 14 H 0.055 0.945 15 O -0.569 6.569 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.219 4.219 19 C -0.033 4.033 20 C -0.071 4.071 21 O -0.543 6.543 22 Si 0.680 3.320 23 C -0.125 4.125 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.133 0.867 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.379 0.621 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.382 0.618 46 H -0.251 1.251 47 H -0.255 1.255 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 -3.674 -1.370 3.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 C -0.203 4.203 4 C -0.034 4.034 5 C -0.160 4.160 6 C 0.095 3.905 7 O -0.222 6.222 8 C -0.014 4.014 9 C -0.105 4.105 10 H 0.105 0.895 11 C -0.149 4.149 12 C -0.189 4.189 13 C 0.044 3.956 14 H 0.073 0.927 15 O -0.374 6.374 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.237 4.237 19 C -0.033 4.033 20 C -0.182 4.182 21 O -0.349 6.349 22 Si 0.581 3.419 23 C -0.143 4.143 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.226 0.774 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.094 0.906 45 H 0.230 0.770 46 H -0.176 1.176 47 H -0.180 1.180 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.053 -2.741 -0.359 2.765 hybrid contribution -0.762 -0.071 -0.366 0.849 sum -0.709 -2.812 -0.725 2.989 Atomic orbital electron populations 1.21875 0.93884 1.02213 1.02310 1.20175 0.96249 0.96284 0.94838 1.21875 1.01445 0.94725 1.02276 1.19728 0.95268 0.94402 0.94041 1.20259 1.04275 1.02122 0.89350 1.18784 0.94186 0.92402 0.85116 1.86063 1.70923 1.53353 1.11854 1.22926 0.98443 0.95524 0.84530 1.21229 0.96426 1.01315 0.91563 0.89482 1.21511 0.94379 1.01206 0.97761 1.22278 1.00530 1.01156 0.94982 1.21841 0.94861 0.95314 0.83577 0.92739 1.86516 1.28111 1.81532 1.41288 1.21439 0.93716 1.02263 0.97388 1.21497 1.00624 0.99828 0.92936 1.20928 1.05711 0.99605 0.97438 1.19039 0.96274 0.95386 0.92645 1.24670 0.86947 0.97458 1.09111 1.86504 1.26614 1.38423 1.83399 0.95425 0.84540 0.86018 0.75918 1.20811 0.99099 0.96044 0.98360 0.91975 0.92424 0.92292 0.89958 0.92343 0.91982 0.92298 0.84882 0.92153 0.91984 0.90633 0.91812 0.91449 0.90873 0.77365 0.90746 0.90854 0.91317 0.90759 0.86049 0.90587 0.77001 1.17551 1.17956 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.02 9.00 37.15 0.33 0.36 16 2 C -0.06 -0.03 3.09 -91.77 -0.28 -0.31 16 3 C -0.15 -0.03 9.01 37.16 0.33 0.31 16 4 C -0.03 -0.08 4.78 -104.64 -0.50 -0.58 16 5 C -0.14 -0.41 8.65 -39.43 -0.34 -0.75 16 6 C 0.14 0.53 6.69 -39.21 -0.26 0.27 16 7 O -0.31 -1.01 9.67 -19.41 -0.19 -1.20 16 8 C 0.06 0.08 4.12 37.16 0.15 0.23 16 9 C -0.09 -0.01 2.43 -90.62 -0.22 -0.23 16 10 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 11 C -0.11 0.00 5.10 -26.73 -0.14 -0.13 16 12 C -0.15 0.05 5.54 -26.73 -0.15 -0.10 16 13 C 0.10 0.02 3.47 -26.73 -0.09 -0.07 16 14 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 15 O -0.57 -0.79 13.32 -35.23 -0.47 -1.26 16 16 C -0.11 -0.03 5.58 -26.71 -0.15 -0.17 16 17 C -0.11 0.08 5.21 -26.71 -0.14 -0.06 16 18 C -0.22 -0.80 7.66 -39.43 -0.30 -1.10 16 19 C -0.03 -0.11 5.38 -104.65 -0.56 -0.67 16 20 C -0.07 -0.04 2.79 36.01 0.10 0.06 16 21 O -0.54 -0.34 12.81 -35.23 -0.45 -0.79 16 22 Si 0.68 -0.37 29.85 -169.99 -5.07 -5.44 16 23 C -0.12 -0.35 9.31 -39.56 -0.37 -0.71 16 24 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 25 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 26 H 0.06 0.00 7.39 -51.93 -0.38 -0.38 16 27 H 0.08 -0.01 7.87 -51.93 -0.41 -0.42 16 28 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.06 0.02 7.39 -51.93 -0.38 -0.37 16 31 H 0.13 0.25 7.10 -52.49 -0.37 -0.13 16 32 H 0.06 0.05 7.66 -51.93 -0.40 -0.34 16 33 H 0.06 0.07 7.66 -51.93 -0.40 -0.33 16 34 H 0.07 0.06 7.82 -51.93 -0.41 -0.34 16 35 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 37 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.38 -0.94 9.08 45.56 0.41 -0.53 16 39 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 41 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 43 H 0.12 0.37 3.11 -52.49 -0.16 0.20 16 44 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 45 H 0.38 -1.74 8.74 45.56 0.40 -1.34 16 46 H -0.25 -0.60 7.05 56.52 0.40 -0.20 16 47 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 48 H 0.13 0.20 7.94 -52.49 -0.42 -0.21 16 LS Contribution 373.18 15.07 5.62 5.62 Total: 0.00 -6.51 373.18 -10.77 -17.28 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: -7.63 Total: -10.54 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.58 Total: -3.67 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: -1.11 Total: -3.25 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.07 Total: -5.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -6.51 -10.77 -17.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13973558_16737256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.192 kcal (2) G-P(sol) polarization free energy of solvation -6.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds