Wall clock time and date at job start Mon Mar 8 2021 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47322 * 2 1 4 4 C 1.50702 * 109.47117 * 119.99769 * 2 1 3 5 5 C 1.38126 * 119.96965 * 300.00018 * 4 2 1 6 6 C 1.38759 * 119.94113 * 179.97438 * 5 4 2 7 7 O 1.35895 * 120.05370 * 180.02562 * 6 5 4 8 8 C 1.42904 * 116.99994 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47259 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47280 * 305.00473 * 9 8 7 11 11 C 1.53000 * 109.47027 * 65.00175 * 9 8 7 12 12 C 1.52998 * 109.47027 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47162 * 300.00310 * 12 11 9 14 14 H 1.08995 * 109.46602 * 299.99719 * 13 12 11 15 15 O 1.42903 * 109.46807 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47039 * 59.99923 * 13 12 11 17 17 C 1.52995 * 109.47148 * 185.00519 * 9 8 7 18 18 C 1.38709 * 119.88803 * 359.97438 * 6 5 4 19 19 C 1.38164 * 119.94688 * 0.02562 * 18 6 5 20 20 C 1.50699 * 119.97605 * 180.02562 * 19 18 6 21 21 O 1.42902 * 109.47060 * 244.98059 * 20 19 18 22 22 Si 1.86303 * 109.47019 * 4.97787 * 20 19 18 23 23 C 1.38245 * 120.05645 * 0.02562 * 19 18 6 24 24 H 1.09006 * 109.47312 * 60.00145 * 1 2 3 25 25 H 1.09000 * 109.47331 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47723 * 300.00448 * 1 2 3 27 27 H 1.09001 * 109.47476 * 240.00011 * 2 1 3 28 28 H 1.08999 * 109.47593 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46808 * 300.00163 * 3 2 1 30 30 H 1.08998 * 109.47542 * 59.99443 * 3 2 1 31 31 H 1.07998 * 120.03128 * 0.02562 * 5 4 2 32 32 H 1.08993 * 109.47211 * 300.00419 * 8 7 6 33 33 H 1.09003 * 109.46242 * 60.00708 * 8 7 6 34 34 H 1.08997 * 109.47041 * 299.99989 * 11 9 8 35 35 H 1.08998 * 109.47199 * 60.00337 * 11 9 8 36 36 H 1.09000 * 109.46995 * 179.97438 * 12 11 9 37 37 H 1.09003 * 109.47280 * 60.00298 * 12 11 9 38 38 H 0.96696 * 114.00558 * 59.99604 * 15 13 12 39 39 H 1.08998 * 109.47137 * 179.97438 * 16 13 12 40 40 H 1.09003 * 109.47031 * 60.00240 * 16 13 12 41 41 H 1.08998 * 109.47065 * 299.99654 * 17 9 8 42 42 H 1.09000 * 109.47480 * 59.99920 * 17 9 8 43 43 H 1.08001 * 120.02763 * 179.97438 * 18 6 5 44 44 H 1.08999 * 109.47509 * 124.97556 * 20 19 18 45 45 H 0.96699 * 113.99543 * 179.97438 * 21 20 19 46 46 H 1.48506 * 109.99701 * 300.00401 * 22 20 19 47 47 H 1.48499 * 109.99763 * 61.31634 * 22 20 19 48 48 H 1.07995 * 119.94685 * 179.72562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6982 -0.2379 2.4847 6 6 2.1606 -0.8927 3.6173 7 8 1.8329 -0.4301 4.8524 8 6 2.3439 -1.1546 5.9731 9 6 1.8725 -0.4899 7.2680 10 1 2.1601 0.5615 7.2623 11 6 0.3503 -0.6016 7.3738 12 6 -0.1212 0.0637 8.6684 13 6 0.5260 -0.6350 9.8659 14 1 0.2384 -1.6863 9.8721 15 8 0.0852 -0.0139 11.0751 16 6 2.0482 -0.5233 9.7601 17 6 2.5197 -1.1891 8.4651 18 6 2.9570 -2.0209 3.4867 19 6 3.2883 -2.4895 2.2299 20 6 4.1531 -3.7154 2.0872 21 8 5.3932 -3.3550 1.4755 22 14 4.4795 -4.4443 3.7704 23 6 2.8273 -1.8347 1.1030 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.0770 0.6400 2.5838 32 1 1.9797 -2.1813 5.9387 33 1 3.4334 -1.1542 5.9398 34 1 -0.1107 -0.1034 6.5210 35 1 0.0626 -1.6529 7.3796 36 1 -1.2057 -0.0154 8.7435 37 1 0.1664 1.1151 8.6622 38 1 -0.8720 -0.0474 11.2082 39 1 2.5093 -1.0206 10.6134 40 1 2.3358 0.5281 9.7539 41 1 2.2320 -2.2404 8.4709 42 1 3.6041 -1.1095 8.3898 43 1 3.3185 -2.5320 4.3667 44 1 3.6416 -4.4506 1.4660 45 1 6.0013 -4.0968 1.3526 46 1 5.1766 -3.4517 4.6272 47 1 3.2000 -4.8524 4.4039 48 1 3.0910 -2.1999 0.1215 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13973558_16737256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:50:30 Heat of formation + Delta-G solvation = -118.694389 kcal Electronic energy + Delta-G solvation = -25952.000420 eV Core-core repulsion = 22358.555636 eV Total energy + Delta-G solvation = -3593.444784 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.187 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69091 -40.34092 -39.19588 -37.91640 -36.86693 -35.92442 -32.69432 -31.93143 -31.52685 -30.66462 -28.05407 -27.39039 -26.43688 -24.20318 -23.93824 -22.98284 -22.36396 -21.00656 -20.47311 -18.97124 -18.45000 -18.26647 -17.59129 -17.38824 -17.21481 -16.48065 -15.80359 -15.66756 -15.56278 -15.39807 -15.14771 -14.92346 -14.74161 -14.47431 -14.39900 -14.12431 -13.89710 -13.52178 -13.44576 -13.30890 -13.09206 -13.03024 -12.96689 -12.61068 -12.58752 -12.26139 -12.19890 -12.16580 -11.94882 -11.81158 -11.79407 -11.68052 -11.54422 -11.19613 -10.79518 -10.36949 -9.92620 -9.36063 -5.04268 0.01630 0.24518 1.20858 1.54170 1.86876 1.93328 2.45793 3.12678 3.25838 3.42858 3.48714 3.57935 3.63486 3.71509 3.81638 3.90188 3.94401 3.98846 4.06731 4.14684 4.18142 4.21696 4.22600 4.23077 4.27228 4.34758 4.37129 4.41711 4.50304 4.53751 4.70517 4.74420 4.75623 4.86259 4.92555 4.92963 4.94867 4.97524 5.02501 5.05025 5.07214 5.10077 5.20219 5.21693 5.28365 5.31310 5.32024 5.53911 5.59912 6.19730 6.80455 6.86040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.034 4.034 5 C -0.152 4.152 6 C 0.127 3.873 7 O -0.318 6.318 8 C 0.060 3.940 9 C -0.082 4.082 10 H 0.079 0.921 11 C -0.108 4.108 12 C -0.145 4.145 13 C 0.102 3.898 14 H 0.063 0.937 15 O -0.588 6.588 16 C -0.111 4.111 17 C -0.106 4.106 18 C -0.236 4.236 19 C -0.049 4.049 20 C -0.079 4.079 21 O -0.561 6.561 22 Si 0.766 3.234 23 C -0.135 4.135 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.394 0.606 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.098 0.902 45 H 0.404 0.596 46 H -0.295 1.295 47 H -0.286 1.286 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -4.410 -2.099 4.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.034 4.034 5 C -0.170 4.170 6 C 0.081 3.919 7 O -0.232 6.232 8 C -0.015 4.015 9 C -0.100 4.100 10 H 0.098 0.902 11 C -0.145 4.145 12 C -0.183 4.183 13 C 0.043 3.957 14 H 0.081 0.919 15 O -0.397 6.397 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.254 4.254 19 C -0.049 4.049 20 C -0.189 4.189 21 O -0.371 6.371 22 Si 0.673 3.327 23 C -0.153 4.153 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.244 0.756 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.256 0.744 46 H -0.223 1.223 47 H -0.214 1.214 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.045 -3.498 -1.112 3.671 hybrid contribution -0.730 0.190 -0.119 0.763 sum -0.775 -3.308 -1.231 3.614 Atomic orbital electron populations 1.21859 0.93334 1.02170 1.02704 1.20216 0.96648 0.96256 0.94235 1.21867 1.00949 0.94657 1.02719 1.19979 0.94690 0.94253 0.94464 1.20423 1.04639 1.02450 0.89523 1.19010 0.94585 0.92778 0.85504 1.86046 1.71173 1.53855 1.12153 1.23022 0.98353 0.95713 0.84451 1.21196 0.96692 1.00854 0.91301 0.90236 1.21472 0.94084 1.01435 0.97543 1.22212 1.01133 1.00388 0.94584 1.21884 0.94728 0.95704 0.83372 0.91904 1.86478 1.29728 1.81764 1.41725 1.21446 0.94029 1.01724 0.97694 1.21464 1.00859 1.00042 0.92002 1.21062 1.06381 1.00060 0.97911 1.19453 0.96565 0.96382 0.92496 1.24806 0.87045 0.96631 1.10376 1.86449 1.26987 1.40306 1.83372 0.94582 0.81245 0.83478 0.73436 1.21044 0.99203 0.96265 0.98813 0.90884 0.92680 0.92592 0.89139 0.93085 0.90803 0.92597 0.84346 0.91858 0.92210 0.91596 0.91255 0.90398 0.91891 0.75645 0.90859 0.91806 0.90477 0.90264 0.86143 0.88426 0.74443 1.22259 1.21360 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.09 9.00 71.98 0.65 0.74 16 2 C -0.06 -0.04 3.09 -11.54 -0.04 -0.08 16 3 C -0.14 -0.04 9.01 71.98 0.65 0.60 16 4 C -0.03 -0.17 4.78 -19.88 -0.10 -0.26 16 5 C -0.15 -1.06 8.65 22.37 0.19 -0.86 16 6 C 0.13 1.15 6.69 22.51 0.15 1.30 16 7 O -0.32 -2.61 9.67 -92.37 -0.89 -3.51 16 8 C 0.06 0.24 4.12 71.98 0.30 0.53 16 9 C -0.08 -0.10 2.43 -10.80 -0.03 -0.13 16 10 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 11 C -0.11 -0.06 5.10 30.59 0.16 0.09 16 12 C -0.15 0.04 5.54 30.60 0.17 0.21 16 13 C 0.10 0.06 3.47 30.59 0.11 0.17 16 14 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 15 O -0.59 -1.69 13.32 -148.98 -1.98 -3.67 16 16 C -0.11 -0.11 5.58 30.61 0.17 0.06 16 17 C -0.11 0.10 5.21 30.61 0.16 0.26 16 18 C -0.24 -2.05 7.66 22.36 0.17 -1.88 16 19 C -0.05 -0.34 5.38 -19.88 -0.11 -0.44 16 20 C -0.08 -0.06 2.79 71.24 0.20 0.14 16 21 O -0.56 -0.32 12.81 -148.98 -1.91 -2.23 16 22 Si 0.77 -0.65 29.85 68.60 2.05 1.40 16 23 C -0.14 -0.78 9.31 22.28 0.21 -0.57 16 24 H 0.07 -0.20 8.14 -2.38 -0.02 -0.21 16 25 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.05 0.01 7.39 -2.39 -0.02 -0.01 16 27 H 0.09 -0.08 7.87 -2.39 -0.02 -0.10 16 28 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 30 H 0.05 0.05 7.39 -2.39 -0.02 0.03 16 31 H 0.14 0.68 7.10 -2.91 -0.02 0.66 16 32 H 0.06 0.20 7.66 -2.39 -0.02 0.18 16 33 H 0.06 0.25 7.66 -2.39 -0.02 0.23 16 34 H 0.07 0.18 7.82 -2.39 -0.02 0.16 16 35 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.39 -1.99 9.08 -74.06 -0.67 -2.66 16 39 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.12 0.93 3.11 -2.91 -0.01 0.92 16 44 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 45 H 0.40 -4.18 8.74 -74.06 -0.65 -4.82 16 46 H -0.29 -1.86 7.05 99.48 0.70 -1.16 16 47 H -0.29 -1.20 7.11 99.48 0.71 -0.50 16 48 H 0.14 0.39 7.94 -2.91 -0.02 0.36 16 Total: 0.00 -15.63 373.18 -0.07 -15.70 By element: Atomic # 1 Polarization: -7.23 SS G_CDS: -0.35 Total: -7.58 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 3.01 Total: -0.11 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -4.79 Total: -9.41 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: 2.05 Total: 1.40 kcal Total: -15.63 -0.07 -15.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13973558_16737256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.995 kcal (2) G-P(sol) polarization free energy of solvation -15.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds