Wall clock time and date at job start Mon Mar 8 2021 08:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99532 * 2 1 4 4 C 1.52998 * 112.85272 * 65.90138 * 3 2 1 5 5 F 1.39905 * 109.46951 * 283.58062 * 4 3 2 6 6 F 1.39899 * 109.47321 * 43.57909 * 4 3 2 7 7 F 1.39900 * 109.47472 * 163.58753 * 4 3 2 8 8 C 1.53779 * 113.61260 * 294.69875 * 3 2 1 9 9 C 1.53778 * 87.08381 * 270.88659 * 8 3 2 10 10 H 1.09000 * 113.61171 * 219.93558 * 9 8 3 11 11 C 1.53002 * 113.61476 * 89.11828 * 9 8 3 12 12 O 1.42897 * 109.46960 * 175.00027 * 11 9 8 13 13 C 1.35904 * 116.99639 * 179.97438 * 12 11 9 14 14 C 1.38719 * 120.05536 * 359.72924 * 13 12 11 15 15 C 1.38168 * 119.93858 * 179.67127 * 14 13 12 16 16 C 1.50697 * 119.96759 * 180.31620 * 15 14 13 17 17 O 1.42902 * 109.46919 * 120.30626 * 16 15 14 18 18 Si 1.86297 * 109.47232 * 0.30607 * 16 15 14 19 19 C 1.38243 * 120.05845 * 0.62569 * 15 14 13 20 20 C 1.38289 * 120.11130 * 359.66985 * 19 15 14 21 21 C 1.50694 * 119.97511 * 180.02562 * 20 19 15 22 22 C 1.53005 * 109.47196 * 119.97835 * 21 20 19 23 23 C 1.53000 * 109.47635 * 239.97924 * 21 20 19 24 24 C 1.38125 * 120.05706 * 0.02562 * 20 19 15 25 25 C 1.53777 * 87.08031 * 334.56799 * 9 8 3 26 26 H 1.08996 * 109.47521 * 296.89803 * 1 2 3 27 27 H 1.09002 * 109.47249 * 56.90705 * 1 2 3 28 28 H 1.09000 * 109.47092 * 176.90215 * 1 2 3 29 29 H 1.09004 * 113.61457 * 156.33743 * 8 3 2 30 30 H 1.08995 * 113.69242 * 25.45033 * 8 3 2 31 31 H 1.09005 * 109.46701 * 295.00138 * 11 9 8 32 32 H 1.08995 * 109.46852 * 54.99336 * 11 9 8 33 33 H 1.07998 * 120.02382 * 359.97438 * 14 13 12 34 34 H 1.09004 * 109.47021 * 240.30220 * 16 15 14 35 35 H 0.96696 * 114.00137 * 180.02562 * 17 16 15 36 36 H 1.48501 * 110.00439 * 59.99812 * 18 16 15 37 37 H 1.48504 * 109.99668 * 181.31639 * 18 16 15 38 38 H 1.07998 * 119.94487 * 179.70158 * 19 15 14 39 39 H 1.09004 * 109.46976 * 359.97438 * 21 20 19 40 40 H 1.08995 * 109.46966 * 60.00205 * 22 21 20 41 41 H 1.09002 * 109.46977 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47239 * 300.00178 * 22 21 20 43 43 H 1.09002 * 109.47352 * 179.97438 * 23 21 20 44 44 H 1.08995 * 109.47038 * 300.00108 * 23 21 20 45 45 H 1.09006 * 109.46905 * 59.99712 * 23 21 20 46 46 H 1.07995 * 120.03206 * 179.97438 * 24 20 19 47 47 H 1.09006 * 113.61373 * 139.98142 * 25 9 8 48 48 H 1.08998 * 113.61817 * 270.88268 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7258 2.0825 1.2870 5 9 0.4090 2.5544 1.2655 6 9 1.9010 1.2390 2.3893 7 9 2.6074 3.1645 1.3830 8 6 1.7227 2.1077 -1.2801 9 6 2.9994 1.4813 -1.8653 10 1 3.5961 2.1768 -2.4555 11 6 2.7568 0.1509 -2.5811 12 8 3.9725 -0.2922 -3.1876 13 6 3.9296 -1.4678 -3.8682 14 6 2.7434 -2.1828 -3.9458 15 6 2.7009 -3.3743 -4.6440 16 6 1.4108 -4.1479 -4.7347 17 8 1.0358 -4.2896 -6.1064 18 14 0.0725 -3.2337 -3.8163 19 6 3.8421 -3.8604 -5.2541 20 6 5.0274 -3.1526 -5.1731 21 6 6.2695 -3.6851 -5.8397 22 6 6.7636 -2.6758 -6.8782 23 6 7.3575 -3.9082 -4.7875 24 6 5.0737 -1.9578 -4.4815 25 6 3.4903 1.3209 -0.4168 26 1 -0.3634 0.4649 0.9164 27 1 -0.3634 0.5611 -0.8610 28 1 -0.3633 -1.0262 -0.0555 29 1 1.7892 3.1871 -1.1432 30 1 0.8113 1.8015 -1.7935 31 1 2.4182 -0.5931 -1.8601 32 1 1.9953 0.2853 -3.3493 33 1 1.8528 -1.8059 -3.4649 34 1 1.5469 -5.1345 -4.2915 35 1 0.2123 -4.7783 -6.2405 36 1 -0.1228 -1.8870 -4.4108 37 1 -1.1971 -4.0021 -3.8713 38 1 3.8080 -4.7943 -5.7954 39 1 6.0408 -4.6304 -6.3319 40 1 6.9922 -1.7306 -6.3860 41 1 7.6618 -3.0613 -7.3607 42 1 5.9885 -2.5169 -7.6279 43 1 8.2558 -4.2938 -5.2697 44 1 7.5862 -2.9629 -4.2953 45 1 7.0055 -4.6272 -4.0476 46 1 5.9996 -1.4055 -4.4181 47 1 4.0057 0.3783 -0.2323 48 1 4.0400 2.1850 -0.0438 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13973558_17321602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:30:53 Heat of formation + Delta-G solvation = -206.956371 kcal Electronic energy + Delta-G solvation = -34226.054740 eV Core-core repulsion = 29220.420702 eV Total energy + Delta-G solvation = -5005.634038 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -51.22289 -48.75969 -48.69116 -41.77260 -41.05344 -39.13106 -38.01275 -37.04991 -35.88661 -32.28919 -30.84463 -30.17795 -28.14941 -27.99028 -27.53318 -26.72575 -26.65261 -24.20971 -23.26523 -22.78793 -20.83978 -20.25470 -19.77655 -19.51339 -19.16567 -18.72608 -18.59566 -17.39199 -17.27684 -17.13511 -16.80952 -16.41484 -15.88841 -15.80628 -15.62089 -15.58432 -15.54153 -15.43594 -15.15005 -15.00413 -14.89450 -14.86049 -14.65932 -14.48506 -14.23823 -14.11846 -13.89512 -13.78667 -13.24068 -13.20908 -13.11149 -13.03337 -12.86420 -12.66254 -12.51111 -12.28941 -12.04427 -12.00595 -11.89738 -11.75504 -11.68092 -11.58753 -11.45992 -10.76821 -10.53810 -9.76756 -9.17732 -5.01400 0.18727 0.41234 1.22135 1.52110 1.56553 1.86157 2.03933 2.14396 2.59357 2.60417 2.66038 2.92849 3.27983 3.34075 3.40951 3.51885 3.59785 3.69272 3.84497 3.95539 4.02574 4.21036 4.27753 4.29590 4.29879 4.30370 4.31878 4.39171 4.42034 4.48177 4.53780 4.57007 4.60802 4.72024 4.73658 4.80690 4.84341 4.87340 4.88205 4.98918 5.03088 5.06121 5.14854 5.23936 5.29688 5.37736 5.42772 5.66009 5.73994 5.75884 6.39755 6.55200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.341 6.341 3 C 0.037 3.963 4 C 0.433 3.567 5 F -0.185 7.185 6 F -0.187 7.187 7 F -0.177 7.177 8 C -0.137 4.137 9 C -0.094 4.094 10 H 0.113 0.887 11 C 0.062 3.938 12 O -0.318 6.318 13 C 0.132 3.868 14 C -0.216 4.216 15 C -0.043 4.043 16 C -0.088 4.088 17 O -0.555 6.555 18 Si 0.746 3.254 19 C -0.141 4.141 20 C -0.038 4.038 21 C -0.056 4.056 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.112 4.112 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.395 0.605 36 H -0.291 1.291 37 H -0.277 1.277 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.137 0.863 47 H 0.093 0.907 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -1.030 -0.092 1.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.259 6.259 3 C -0.006 4.006 4 C 0.378 3.622 5 F -0.166 7.166 6 F -0.168 7.168 7 F -0.159 7.159 8 C -0.174 4.174 9 C -0.112 4.112 10 H 0.131 0.869 11 C -0.013 4.013 12 O -0.232 6.232 13 C 0.087 3.913 14 C -0.234 4.234 15 C -0.043 4.043 16 C -0.196 4.196 17 O -0.365 6.365 18 Si 0.651 3.349 19 C -0.159 4.159 20 C -0.038 4.038 21 C -0.075 4.075 22 C -0.201 4.201 23 C -0.200 4.200 24 C -0.171 4.171 25 C -0.149 4.149 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.114 0.886 35 H 0.246 0.754 36 H -0.218 1.218 37 H -0.204 1.204 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.155 0.845 47 H 0.112 0.888 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.645 -0.341 -0.149 0.745 hybrid contribution -1.112 -0.321 -0.542 1.278 sum -1.758 -0.662 -0.691 2.001 Atomic orbital electron populations 1.23370 0.78759 1.05878 1.01690 1.88078 1.22024 1.22015 1.93799 1.24162 1.00567 0.86425 0.89422 1.21519 0.74100 0.78701 0.87857 1.93182 1.37191 1.89429 1.96836 1.93189 1.95023 1.71088 1.57533 1.93170 1.68955 1.57143 1.96610 1.23644 0.99756 1.01538 0.92458 1.22016 0.97967 0.95972 0.95275 0.86923 1.22930 0.85044 0.96476 0.96841 1.86016 1.36481 1.35102 1.65620 1.18904 0.93945 0.85725 0.92759 1.21094 0.98111 0.97342 1.06825 1.19193 0.94420 0.94036 0.96657 1.25006 1.01248 1.05201 0.88165 1.86546 1.46610 1.79562 1.23767 0.94360 0.75381 0.76708 0.88481 1.20946 0.91800 1.01398 1.01803 1.19859 0.95353 0.93194 0.95383 1.20192 0.91879 0.99319 0.96081 1.21861 1.01243 0.98907 0.98136 1.21852 0.97789 1.02148 0.98211 1.20395 0.97442 0.97557 1.01677 1.23314 0.90586 1.05869 0.95109 0.93721 0.91386 0.86000 0.85892 0.87674 0.89307 0.91308 0.84146 0.88557 0.75423 1.21811 1.20360 0.85501 0.89830 0.92257 0.91148 0.93281 0.91278 0.92272 0.92647 0.84472 0.88805 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 10.33 113.37 1.17 1.18 16 2 O -0.34 0.49 8.35 -148.98 -1.24 -0.76 16 3 C 0.04 -0.08 0.85 -10.27 -0.01 -0.09 16 4 C 0.43 0.67 2.51 71.98 0.18 0.85 16 5 F -0.18 -0.38 15.37 44.97 0.69 0.31 16 6 F -0.19 -1.01 17.09 44.97 0.77 -0.25 16 7 F -0.18 -0.33 15.83 44.97 0.71 0.38 16 8 C -0.14 0.81 6.51 31.12 0.20 1.02 16 9 C -0.09 0.41 4.20 -10.27 -0.04 0.36 16 10 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 11 C 0.06 -0.09 4.32 71.98 0.31 0.22 16 12 O -0.32 -1.10 10.14 -92.47 -0.94 -2.04 16 13 C 0.13 0.64 6.69 22.51 0.15 0.79 16 14 C -0.22 -0.79 7.66 22.37 0.17 -0.62 16 15 C -0.04 -0.18 5.42 -19.88 -0.11 -0.29 16 16 C -0.09 -0.05 2.81 71.23 0.20 0.15 16 17 O -0.55 -1.56 12.74 -148.98 -1.90 -3.45 16 18 Si 0.75 -1.17 29.79 68.60 2.04 0.87 16 19 C -0.14 -0.68 9.23 22.28 0.21 -0.47 16 20 C -0.04 -0.14 4.78 -19.88 -0.10 -0.24 16 21 C -0.06 -0.02 3.09 -11.54 -0.04 -0.06 16 22 C -0.14 0.02 9.01 71.98 0.65 0.66 16 23 C -0.14 0.16 9.01 71.98 0.65 0.80 16 24 C -0.15 -0.66 8.65 22.37 0.19 -0.47 16 25 C -0.11 0.37 6.89 31.12 0.21 0.58 16 26 H 0.04 -0.13 6.60 -2.39 -0.02 -0.15 16 27 H 0.07 -0.54 6.60 -2.39 -0.02 -0.56 16 28 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 29 H 0.12 -0.96 8.06 -2.38 -0.02 -0.98 16 30 H 0.10 -0.84 6.65 -2.39 -0.02 -0.85 16 31 H 0.09 -0.17 5.63 -2.38 -0.01 -0.18 16 32 H 0.07 -0.16 7.68 -2.39 -0.02 -0.18 16 33 H 0.14 0.01 3.12 -2.91 -0.01 0.00 16 34 H 0.10 -0.32 7.96 -2.38 -0.02 -0.33 16 35 H 0.40 -2.19 8.74 -74.06 -0.65 -2.84 16 36 H -0.29 -1.34 7.11 99.48 0.71 -0.64 16 37 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 38 H 0.13 0.45 7.94 -2.91 -0.02 0.43 16 39 H 0.08 -0.02 7.87 -2.38 -0.02 -0.04 16 40 H 0.06 0.00 7.39 -2.39 -0.02 -0.02 16 41 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.06 -0.05 7.38 -2.39 -0.02 -0.07 16 45 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 46 H 0.14 0.34 7.10 -2.91 -0.02 0.32 16 47 H 0.09 -0.17 8.10 -2.38 -0.02 -0.18 16 48 H 0.12 -0.62 7.01 -2.39 -0.02 -0.64 16 Total: 0.00 -13.79 388.17 4.53 -9.25 By element: Atomic # 1 Polarization: -9.11 SS G_CDS: 0.39 Total: -8.72 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 4.01 Total: 4.40 kcal Atomic # 8 Polarization: -2.17 SS G_CDS: -4.08 Total: -6.25 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 2.17 Total: 0.45 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.04 Total: 0.87 kcal Total: -13.79 4.53 -9.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13973558_17321602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.703 kcal (2) G-P(sol) polarization free energy of solvation -13.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds