Wall clock time and date at job start Mon Mar 8 2021 10:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 C 1.50707 * 109.46977 * 119.99217 * 2 1 3 5 5 C 1.38245 * 119.96722 * 119.99953 * 4 2 1 6 6 C 1.38292 * 120.10937 * 179.97438 * 5 4 2 7 7 C 1.50693 * 119.97318 * 180.02562 * 6 5 4 8 8 O 1.42897 * 109.47438 * 299.98317 * 7 6 5 9 9 Si 1.86301 * 109.47114 * 179.97438 * 7 6 5 10 10 H 1.48497 * 109.47022 * 60.00333 * 9 7 6 11 11 H 1.48510 * 109.46942 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47223 * 300.00080 * 9 7 6 13 13 C 1.38118 * 120.05441 * 0.02562 * 6 5 4 14 14 C 1.38755 * 119.94759 * 0.02562 * 13 6 5 15 15 O 1.35894 * 120.05873 * 180.02562 * 14 13 6 16 16 C 1.42906 * 117.00187 * 359.97438 * 15 14 13 17 17 C 1.50693 * 109.47463 * 180.02562 * 16 15 14 18 18 C 1.38233 * 120.00207 * 89.99418 * 17 16 15 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.26327 * 19 18 17 21 21 Si 1.86795 * 120.00205 * 180.02562 * 20 19 18 22 22 C 1.86297 * 109.47192 * 89.99958 * 21 20 19 23 23 C 1.86301 * 109.47283 * 209.99980 * 21 20 19 24 24 C 1.86301 * 109.47118 * 329.99845 * 21 20 19 25 25 C 1.38238 * 119.99693 * 359.97438 * 20 19 18 26 26 C 1.38234 * 120.00067 * 0.02562 * 25 20 19 27 27 C 1.38161 * 119.97449 * 300.30429 * 4 2 1 28 28 H 1.09002 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47478 * 300.00316 * 1 2 3 30 30 H 1.09005 * 109.47212 * 60.00660 * 1 2 3 31 31 H 1.08996 * 109.47257 * 239.99521 * 2 1 3 32 32 H 1.09001 * 109.47286 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46518 * 299.99765 * 3 2 1 34 34 H 1.08996 * 109.47425 * 59.99625 * 3 2 1 35 35 H 1.07998 * 119.94705 * 0.02562 * 5 4 2 36 36 H 1.08999 * 109.47011 * 59.98040 * 7 6 5 37 37 H 0.96700 * 114.00459 * 299.99661 * 8 7 6 38 38 H 1.08000 * 120.02798 * 180.02562 * 13 6 5 39 39 H 1.09000 * 109.46902 * 60.00273 * 16 15 14 40 40 H 1.09001 * 109.46622 * 300.00169 * 16 15 14 41 41 H 1.08002 * 120.00157 * 0.02562 * 18 17 16 42 42 H 1.07999 * 120.00009 * 180.28389 * 19 18 17 43 43 H 1.08999 * 109.47282 * 60.00138 * 22 21 20 44 44 H 1.08997 * 109.47709 * 179.97438 * 22 21 20 45 45 H 1.09001 * 109.47505 * 300.00288 * 22 21 20 46 46 H 1.08998 * 109.47270 * 60.00089 * 23 21 20 47 47 H 1.08997 * 109.47416 * 180.02562 * 23 21 20 48 48 H 1.09006 * 109.46995 * 300.00168 * 23 21 20 49 49 H 1.09002 * 109.46976 * 60.00696 * 24 21 20 50 50 H 1.09005 * 109.47230 * 179.97438 * 24 21 20 51 51 H 1.08998 * 109.47233 * 299.99787 * 24 21 20 52 52 H 1.08001 * 119.99624 * 180.02562 * 25 20 19 53 53 H 1.07999 * 120.00008 * 180.02562 * 26 25 20 54 54 H 1.07996 * 120.02826 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.8270 -1.8343 1.1032 6 6 3.2900 -2.4880 2.2304 7 6 4.1565 -3.7126 2.0879 8 8 3.4411 -4.7219 1.3729 9 14 4.6106 -4.3521 3.7778 10 1 3.3749 -4.7041 4.5223 11 1 5.4641 -5.5593 3.6373 12 1 5.3543 -3.3032 4.5207 13 6 2.9588 -2.0195 3.4868 14 6 2.1604 -0.8921 3.6174 15 8 1.8336 -0.4289 4.8524 16 6 2.3463 -1.1520 5.9733 17 6 1.8828 -0.4967 7.2487 18 6 0.6933 -0.8880 7.8341 19 6 0.2710 -0.2908 9.0071 20 6 1.0355 0.7014 9.5918 21 14 0.4651 1.5079 11.1772 22 6 1.1408 0.5620 12.6331 23 6 1.0825 3.2646 11.2374 24 6 -1.3967 1.5014 11.2424 25 6 2.2226 1.0961 9.0037 26 6 2.6450 0.4990 7.8307 27 6 1.6930 -0.2413 2.4851 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.0874 -2.2019 0.1217 36 1 5.0636 -3.4542 1.5415 37 1 2.6208 -5.0014 1.8020 38 1 3.3209 -2.5301 4.3668 39 1 3.4358 -1.1508 5.9389 40 1 1.9829 -2.1791 5.9400 41 1 0.0962 -1.6636 7.3777 42 1 -0.6561 -0.5997 9.4669 43 1 2.2301 0.5658 12.5950 44 1 0.8084 1.0328 13.5582 45 1 0.7797 -0.4658 12.5979 46 1 0.6872 3.8181 10.3857 47 1 0.7501 3.7351 12.1628 48 1 2.1719 3.2684 11.1993 49 1 -1.7579 0.4736 11.2073 50 1 -1.7295 1.9716 12.1678 51 1 -1.7920 2.0549 10.3906 52 1 2.8201 1.8711 9.4607 53 1 3.5726 0.8070 7.3715 54 1 1.0684 0.6342 2.5841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13973558_9403676.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:16:48 Heat of formation + Delta-G solvation = -70.797405 kcal Electronic energy + Delta-G solvation = -29054.292310 eV Core-core repulsion = 25272.259163 eV Total energy + Delta-G solvation = -3782.033147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 358.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.60801 -40.22994 -39.06084 -37.97206 -35.84557 -33.31660 -31.92492 -31.75765 -30.63239 -29.44936 -28.30783 -28.28279 -28.01689 -27.66388 -26.64714 -24.16716 -23.52816 -23.03190 -22.17763 -20.61522 -19.17659 -18.04809 -17.69126 -17.26944 -17.15731 -16.99119 -16.20018 -16.09141 -15.85178 -15.57104 -15.34624 -14.95143 -14.77675 -14.41187 -14.40343 -14.34864 -14.10863 -14.06375 -13.87691 -13.75112 -13.53633 -13.36944 -13.16814 -13.13707 -13.12621 -13.08752 -12.99867 -12.97797 -12.64056 -12.34343 -12.26937 -12.10087 -12.00191 -11.89001 -11.80713 -11.76022 -11.61438 -10.94189 -10.80841 -10.77190 -10.46348 -9.84950 -9.83653 -9.73322 -9.26310 0.11171 0.12534 0.34470 0.47939 1.08457 1.34508 1.41571 1.81235 1.81389 1.96037 2.01005 2.25861 2.57812 2.65031 2.97179 3.39743 3.48529 3.60145 3.71852 3.72180 3.86856 3.97068 4.04470 4.16762 4.17956 4.24333 4.27214 4.32618 4.39371 4.49352 4.56422 4.60028 4.66808 4.77675 4.82376 4.83536 4.83593 4.87508 4.88105 4.88686 4.89531 4.95241 4.96355 4.99653 5.11107 5.11872 5.15843 5.27187 5.34787 5.35719 5.36644 5.52741 5.55472 5.58091 5.62368 5.66821 5.68505 5.69281 6.07928 6.29370 6.63446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.035 4.035 5 C -0.132 4.132 6 C -0.078 4.078 7 C -0.075 4.075 8 O -0.547 6.547 9 Si 0.966 3.034 10 H -0.253 1.253 11 H -0.267 1.267 12 H -0.257 1.257 13 C -0.227 4.227 14 C 0.126 3.874 15 O -0.321 6.321 16 C 0.096 3.904 17 C -0.105 4.105 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.373 4.373 21 Si 1.127 2.873 22 C -0.462 4.462 23 C -0.463 4.463 24 C -0.462 4.462 25 C -0.102 4.102 26 C -0.122 4.122 27 C -0.152 4.152 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.389 0.611 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.067 0.933 52 H 0.141 0.859 53 H 0.126 0.874 54 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 0.794 1.910 2.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.035 4.035 5 C -0.150 4.150 6 C -0.078 4.078 7 C -0.186 4.186 8 O -0.354 6.354 9 Si 0.791 3.209 10 H -0.176 1.176 11 H -0.192 1.192 12 H -0.182 1.182 13 C -0.246 4.246 14 C 0.080 3.920 15 O -0.235 6.235 16 C 0.022 3.978 17 C -0.105 4.105 18 C -0.140 4.140 19 C -0.120 4.120 20 C -0.412 4.412 21 Si 1.314 2.686 22 C -0.568 4.568 23 C -0.570 4.570 24 C -0.570 4.570 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.170 4.170 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.238 0.762 38 H 0.147 0.853 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.086 0.914 52 H 0.159 0.841 53 H 0.144 0.856 54 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.126 0.667 2.319 2.417 hybrid contribution -0.273 -0.181 -0.170 0.369 sum -0.399 0.486 2.149 2.239 Atomic orbital electron populations 1.21858 0.93686 1.02079 1.02500 1.20209 0.96428 0.96291 0.94529 1.21862 1.01117 0.94672 1.02508 1.19900 0.95034 0.94500 0.94114 1.20983 0.99534 0.95543 0.98931 1.20174 0.97922 0.97293 0.92446 1.24964 0.97397 0.87037 1.09211 1.86488 1.41063 1.55875 1.52003 0.85450 0.80638 0.79735 0.75124 1.17632 1.19178 1.18154 1.21171 1.05242 0.99768 0.98391 1.19019 0.94781 0.93191 0.84969 1.86148 1.71270 1.53939 1.12168 1.21756 0.98946 0.95171 0.81955 1.19595 0.96788 0.98927 0.95219 1.21373 0.95292 1.00550 0.96759 1.21401 1.00069 0.95740 0.94783 1.28110 0.97656 1.01524 1.13883 0.77176 0.65502 0.64825 0.61074 1.26269 1.06721 1.08911 1.14906 1.26282 1.06579 1.19387 1.04725 1.26279 1.21177 1.04769 1.04730 1.21400 0.96724 0.99114 0.94764 1.21374 1.00210 0.95648 0.96785 1.20377 1.04481 1.02435 0.89728 0.92730 0.92724 0.91157 0.89222 0.92728 0.91146 0.92727 0.84502 0.85285 0.76239 0.85280 0.90502 0.90420 0.85495 0.84104 0.91372 0.90585 0.91354 0.91398 0.90564 0.90900 0.90881 0.90566 0.91393 0.84133 0.85557 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.09 9.00 71.98 0.65 0.74 16 2 C -0.06 0.01 3.09 -11.54 -0.04 -0.03 16 3 C -0.14 0.09 9.01 71.98 0.65 0.74 16 4 C -0.04 -0.11 4.78 -19.88 -0.10 -0.20 16 5 C -0.13 -0.38 9.23 22.28 0.21 -0.17 16 6 C -0.08 -0.21 5.39 -19.88 -0.11 -0.32 16 7 C -0.08 0.00 2.82 71.23 0.20 0.20 16 8 O -0.55 -0.46 12.77 -148.98 -1.90 -2.36 16 9 Si 0.97 0.16 25.07 68.60 1.72 1.88 16 10 H -0.25 -0.06 7.11 99.48 0.71 0.65 16 11 H -0.27 -0.76 7.11 99.48 0.71 -0.05 16 12 H -0.26 -0.31 7.11 99.48 0.71 0.40 16 13 C -0.23 -0.95 7.66 22.37 0.17 -0.78 16 14 C 0.13 0.82 6.69 22.51 0.15 0.97 16 15 O -0.32 -2.50 10.12 -92.35 -0.93 -3.43 16 16 C 0.10 0.37 4.86 71.23 0.35 0.72 16 17 C -0.11 -0.50 5.51 -19.87 -0.11 -0.61 16 18 C -0.12 -0.44 9.70 22.27 0.22 -0.22 16 19 C -0.10 -0.13 9.29 22.27 0.21 0.08 16 20 C -0.37 0.02 4.59 22.27 0.10 0.12 16 21 Si 1.13 -6.24 12.32 68.60 0.85 -5.39 16 22 C -0.46 1.72 8.65 113.37 0.98 2.70 16 23 C -0.46 1.87 8.53 113.37 0.97 2.84 16 24 C -0.46 1.90 8.53 113.37 0.97 2.86 16 25 C -0.10 -0.14 9.29 22.27 0.21 0.07 16 26 C -0.12 -0.46 9.70 22.27 0.22 -0.24 16 27 C -0.15 -0.81 8.65 22.37 0.19 -0.61 16 28 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.05 0.01 7.37 -2.38 -0.02 0.00 16 30 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 31 H 0.09 -0.14 7.87 -2.39 -0.02 -0.15 16 32 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 34 H 0.05 0.02 7.40 -2.39 -0.02 0.00 16 35 H 0.14 0.13 7.94 -2.91 -0.02 0.11 16 36 H 0.13 -0.25 7.96 -2.39 -0.02 -0.27 16 37 H 0.39 -1.99 8.70 -74.06 -0.64 -2.63 16 38 H 0.13 0.26 3.12 -2.91 -0.01 0.25 16 39 H 0.08 0.14 7.61 -2.39 -0.02 0.12 16 40 H 0.08 0.12 7.61 -2.39 -0.02 0.10 16 41 H 0.13 0.15 8.06 -2.91 -0.02 0.12 16 42 H 0.14 -0.45 7.43 -2.91 -0.02 -0.47 16 43 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 44 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 45 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 46 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 47 H 0.08 -0.35 7.96 -2.39 -0.02 -0.36 16 48 H 0.07 -0.33 7.69 -2.38 -0.02 -0.34 16 49 H 0.07 -0.33 7.69 -2.39 -0.02 -0.35 16 50 H 0.08 -0.35 7.96 -2.38 -0.02 -0.37 16 51 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 52 H 0.14 -0.43 7.43 -2.91 -0.02 -0.45 16 53 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 54 H 0.13 0.60 7.10 -2.91 -0.02 0.58 16 Total: 0.00 -11.89 433.93 6.79 -5.10 By element: Atomic # 1 Polarization: -5.61 SS G_CDS: 0.98 Total: -4.63 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.08 Total: 8.84 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: -2.84 Total: -5.79 kcal Atomic # 14 Polarization: -6.08 SS G_CDS: 2.57 Total: -3.52 kcal Total: -11.89 6.79 -5.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13973558_9403676.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.696 kcal (2) G-P(sol) polarization free energy of solvation -11.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds