Wall clock time and date at job start Mon Mar 8 2021 08:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99703 * 2 1 4 4 C 1.52999 * 112.85204 * 293.89624 * 3 2 1 5 5 F 1.39899 * 109.47440 * 195.30433 * 4 3 2 6 6 F 1.39904 * 109.47181 * 315.30367 * 4 3 2 7 7 F 1.39895 * 109.47148 * 75.30157 * 4 3 2 8 8 C 1.53776 * 113.69081 * 162.62656 * 3 2 1 9 9 C 1.53781 * 87.08354 * 270.87331 * 8 3 2 10 10 H 1.09001 * 113.69343 * 220.00686 * 9 8 3 11 11 C 1.53001 * 113.61616 * 89.11190 * 9 8 3 12 12 O 1.42902 * 109.46735 * 87.50305 * 11 9 8 13 13 C 1.35997 * 116.99771 * 180.02562 * 12 11 9 14 14 C 1.39159 * 120.07156 * 180.02562 * 13 12 11 15 15 O 1.35997 * 120.06973 * 359.97438 * 14 13 12 16 16 C 1.42898 * 116.99663 * 174.75145 * 15 14 13 17 17 C 1.53004 * 109.46975 * 85.80278 * 16 15 14 18 18 C 1.52999 * 109.47420 * 205.80235 * 16 15 14 19 19 C 1.38566 * 119.85495 * 180.02562 * 14 13 12 20 20 C 1.38245 * 119.99435 * 0.02562 * 19 14 13 21 21 C 1.38248 * 120.14846 * 359.97438 * 20 19 14 22 22 C 1.50702 * 119.92511 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47235 * 119.99882 * 22 21 20 24 24 Si 1.86306 * 109.47045 * 359.97438 * 22 21 20 25 25 C 1.38240 * 120.14932 * 359.76848 * 21 20 19 26 26 C 1.53780 * 87.07988 * 334.56770 * 9 8 3 27 27 H 1.08996 * 109.47431 * 303.22162 * 1 2 3 28 28 H 1.09003 * 109.47347 * 63.23071 * 1 2 3 29 29 H 1.08998 * 109.46779 * 183.22556 * 1 2 3 30 30 H 1.09006 * 113.61716 * 156.32832 * 8 3 2 31 31 H 1.09000 * 113.61913 * 25.42048 * 8 3 2 32 32 H 1.09004 * 109.46784 * 327.51127 * 11 9 8 33 33 H 1.08991 * 109.47484 * 207.50288 * 11 9 8 34 34 H 1.09003 * 109.47530 * 325.81011 * 16 15 14 35 35 H 1.08999 * 109.47127 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.47444 * 300.00107 * 17 16 15 37 37 H 1.08998 * 109.47224 * 60.00318 * 17 16 15 38 38 H 1.08995 * 109.47193 * 60.00134 * 18 16 15 39 39 H 1.08999 * 109.47294 * 180.02562 * 18 16 15 40 40 H 1.08999 * 109.46871 * 300.00368 * 18 16 15 41 41 H 1.07998 * 120.00199 * 180.02562 * 19 14 13 42 42 H 1.08002 * 119.92333 * 179.97438 * 20 19 14 43 43 H 1.09000 * 109.46975 * 240.00056 * 22 21 20 44 44 H 0.96692 * 114.00253 * 299.99963 * 23 22 21 45 45 H 1.48504 * 109.99711 * 58.68692 * 24 22 21 46 46 H 1.48498 * 109.99733 * 179.97438 * 24 22 21 47 47 H 1.07999 * 120.00420 * 180.25486 * 25 21 20 48 48 H 1.08999 * 113.61468 * 139.97883 * 26 9 8 49 49 H 1.09008 * 113.61472 * 270.80061 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7301 2.0806 -1.2890 5 9 2.5951 3.1770 -1.3713 6 9 1.9334 1.2425 -2.3907 7 9 0.4056 2.5309 -1.2840 8 6 3.4892 1.3234 0.4205 9 6 2.9945 1.4857 1.8675 10 1 3.5889 2.1830 2.4579 11 6 2.7517 0.1564 2.5850 12 8 3.9664 -0.2843 3.1953 13 6 3.9232 -1.4595 3.8783 14 6 5.0692 -1.9484 4.4980 15 8 6.2350 -1.2522 4.4215 16 6 7.3403 -1.7530 5.1761 17 6 8.0794 -2.8123 4.3560 18 6 8.2959 -0.6042 5.5048 19 6 5.0202 -3.1465 5.1923 20 6 3.8347 -3.8537 5.2677 21 6 2.6962 -3.3679 4.6520 22 6 1.4064 -4.1426 4.7378 23 8 0.4092 -3.3388 5.3715 24 14 1.6788 -5.6940 5.7327 25 6 2.7369 -2.1706 3.9622 26 6 1.7186 2.1096 1.2780 27 1 -0.3634 0.5630 0.8596 28 1 -0.3634 0.4629 -0.9175 29 1 -0.3633 -1.0260 0.0578 30 1 4.0389 2.1877 0.0474 31 1 4.0063 0.3812 0.2390 32 1 2.4158 -0.5893 1.8644 33 1 1.9882 0.2912 3.3511 34 1 6.9762 -2.1990 6.1017 35 1 8.9223 -3.1947 4.9317 36 1 7.3988 -3.6308 4.1218 37 1 8.4436 -2.3665 3.4304 38 1 7.7694 0.1505 6.0890 39 1 9.1392 -0.9863 6.0800 40 1 8.6599 -0.1583 4.5792 41 1 5.9081 -3.5279 5.6745 42 1 3.7979 -4.7876 5.8088 43 1 1.0749 -4.4086 3.7341 44 1 0.6376 -3.0646 6.2701 45 1 2.1618 -5.3465 7.0934 46 1 0.4140 -6.4666 5.8253 47 1 1.8451 -1.7913 3.4856 48 1 0.8060 1.8020 1.7887 49 1 1.7835 3.1890 1.1407 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_13978674_17321602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:23:34 Heat of formation + Delta-G solvation = -238.907536 kcal Electronic energy + Delta-G solvation = -36809.337243 eV Core-core repulsion = 31483.635507 eV Total energy + Delta-G solvation = -5325.701736 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.158 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -51.14661 -48.69445 -48.57767 -41.90691 -41.35023 -39.67324 -38.90869 -37.30733 -36.89012 -34.19812 -31.68147 -31.41997 -30.21168 -28.32402 -28.27472 -27.49840 -26.86608 -26.30721 -24.36187 -23.27353 -22.71380 -21.70306 -20.60358 -19.85422 -19.55637 -19.42849 -19.19753 -18.45502 -18.06120 -17.36792 -17.11401 -16.92020 -16.54745 -16.30507 -16.21778 -16.00300 -15.90455 -15.70791 -15.55611 -15.51880 -15.45557 -15.08476 -14.96210 -14.77112 -14.71902 -14.51511 -14.34763 -14.24792 -13.89606 -13.81941 -13.64777 -13.39412 -13.27529 -13.19795 -13.07342 -12.84745 -12.73916 -12.55254 -12.38920 -12.18641 -12.02201 -11.86290 -11.79561 -11.72123 -11.67117 -11.50951 -10.85325 -10.61714 -9.69876 -8.77241 -4.96502 0.24722 0.35489 1.28052 1.57446 1.59127 1.94939 1.99236 2.07068 2.19469 2.56446 2.62931 2.64565 2.88172 3.26984 3.34821 3.37215 3.48038 3.61529 3.67870 3.72855 3.83960 3.91466 3.97467 4.07082 4.07607 4.16255 4.20054 4.26329 4.28014 4.30234 4.36791 4.41878 4.50847 4.55697 4.57548 4.59893 4.60211 4.69267 4.73457 4.75789 4.77807 4.81369 4.94753 5.04673 5.14282 5.17778 5.23322 5.42198 5.62770 5.63898 6.15110 6.38584 6.64110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.332 6.332 3 C 0.039 3.961 4 C 0.437 3.563 5 F -0.175 7.175 6 F -0.174 7.174 7 F -0.182 7.182 8 C -0.111 4.111 9 C -0.097 4.097 10 H 0.106 0.894 11 C 0.069 3.931 12 O -0.300 6.300 13 C 0.104 3.896 14 C 0.112 3.888 15 O -0.297 6.297 16 C 0.075 3.925 17 C -0.181 4.181 18 C -0.149 4.149 19 C -0.172 4.172 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.071 4.071 23 O -0.531 6.531 24 Si 0.684 3.316 25 C -0.145 4.145 26 C -0.144 4.144 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.376 0.624 45 H -0.260 1.260 46 H -0.257 1.257 47 H 0.138 0.862 48 H 0.094 0.906 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -1.521 2.700 3.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.249 6.249 3 C -0.003 4.003 4 C 0.382 3.618 5 F -0.156 7.156 6 F -0.155 7.155 7 F -0.163 7.163 8 C -0.148 4.148 9 C -0.115 4.115 10 H 0.124 0.876 11 C -0.006 4.006 12 O -0.213 6.213 13 C 0.058 3.942 14 C 0.066 3.934 15 O -0.211 6.211 16 C 0.019 3.981 17 C -0.239 4.239 18 C -0.206 4.206 19 C -0.191 4.191 20 C -0.130 4.130 21 C -0.118 4.118 22 C -0.181 4.181 23 O -0.337 6.337 24 Si 0.585 3.415 25 C -0.164 4.164 26 C -0.181 4.181 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.158 0.842 42 H 0.148 0.852 43 H 0.136 0.864 44 H 0.223 0.777 45 H -0.185 1.185 46 H -0.183 1.183 47 H 0.155 0.845 48 H 0.113 0.887 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.844 -1.913 2.664 3.763 hybrid contribution -0.879 1.068 0.324 1.421 sum 0.965 -0.845 2.988 3.252 Atomic orbital electron populations 1.23154 0.79495 1.04395 1.01589 1.88091 1.21117 1.21901 1.93838 1.24043 1.00139 0.86315 0.89836 1.21184 0.74264 0.78705 0.87610 1.93180 1.69907 1.55891 1.96637 1.93221 1.94574 1.71019 1.56714 1.93188 1.36256 1.90025 1.96877 1.23255 0.90799 1.05795 0.94951 1.22048 0.97324 0.96548 0.95578 0.87563 1.22734 0.85636 0.95700 0.96536 1.86131 1.34966 1.34838 1.65400 1.18202 0.91879 0.87645 0.96473 1.18257 0.85142 0.92000 0.97975 1.86252 1.17341 1.50886 1.66643 1.22500 0.85706 0.95813 0.94096 1.22396 1.01080 0.98865 1.01520 1.21857 0.98307 0.97723 1.02755 1.21061 0.99779 0.94917 1.03311 1.20690 0.92111 0.99664 1.00547 1.19936 0.95625 0.96263 0.99967 1.24977 0.87268 1.01462 1.04367 1.86581 1.43884 1.70473 1.32769 0.94968 0.84997 0.79979 0.81535 1.20895 0.96485 0.96148 1.02901 1.23603 0.99654 1.01126 0.93714 0.92632 0.92750 0.87956 0.86565 0.88224 0.89868 0.91693 0.90921 0.90835 0.91749 0.91219 0.91625 0.90390 0.91285 0.84177 0.85214 0.86443 0.77673 1.18461 1.18254 0.84463 0.88742 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.33 101.05 1.04 1.03 16 2 O -0.33 -0.18 8.38 -35.23 -0.30 -0.47 16 3 C 0.04 0.00 0.84 -89.81 -0.08 -0.08 16 4 C 0.44 0.61 2.53 37.16 0.09 0.71 16 5 F -0.17 -0.26 15.80 2.25 0.04 -0.22 16 6 F -0.17 -0.55 17.11 2.25 0.04 -0.51 16 7 F -0.18 -0.30 15.32 2.25 0.03 -0.26 16 8 C -0.11 0.07 6.89 -25.92 -0.18 -0.11 16 9 C -0.10 0.11 4.20 -89.81 -0.38 -0.27 16 10 H 0.11 -0.15 8.14 -51.93 -0.42 -0.57 16 11 C 0.07 0.01 4.33 37.16 0.16 0.17 16 12 O -0.30 -0.83 9.92 -34.23 -0.34 -1.17 16 13 C 0.10 0.28 6.70 -39.12 -0.26 0.01 16 14 C 0.11 0.27 6.62 -39.12 -0.26 0.01 16 15 O -0.30 -0.82 9.58 -34.23 -0.33 -1.15 16 16 C 0.07 -0.02 2.84 -26.73 -0.08 -0.09 16 17 C -0.18 0.21 9.20 37.16 0.34 0.55 16 18 C -0.15 0.16 9.56 37.16 0.36 0.51 16 19 C -0.17 -0.08 8.29 -39.46 -0.33 -0.41 16 20 C -0.11 0.01 8.66 -39.57 -0.34 -0.33 16 21 C -0.12 -0.06 5.39 -104.62 -0.56 -0.62 16 22 C -0.07 0.02 2.82 36.01 0.10 0.12 16 23 O -0.53 -0.51 12.76 -35.23 -0.45 -0.96 16 24 Si 0.68 -0.68 29.78 -169.99 -5.06 -5.74 16 25 C -0.15 -0.20 8.59 -39.46 -0.34 -0.54 16 26 C -0.14 0.27 6.52 -25.92 -0.17 0.10 16 27 H 0.06 -0.14 6.58 -51.93 -0.34 -0.48 16 28 H 0.05 -0.03 6.55 -51.93 -0.34 -0.37 16 29 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 30 H 0.12 -0.18 7.03 -51.93 -0.37 -0.54 16 31 H 0.10 0.02 8.10 -51.93 -0.42 -0.40 16 32 H 0.08 0.03 5.65 -51.93 -0.29 -0.27 16 33 H 0.06 -0.05 7.66 -51.93 -0.40 -0.45 16 34 H 0.07 -0.10 6.25 -51.93 -0.32 -0.42 16 35 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 36 H 0.06 -0.07 7.02 -51.93 -0.36 -0.43 16 37 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 38 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 39 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 40 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.14 -0.21 5.47 -52.49 -0.29 -0.50 16 42 H 0.13 -0.26 4.87 -52.49 -0.26 -0.52 16 43 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 44 H 0.38 -0.62 8.70 45.56 0.40 -0.23 16 45 H -0.26 -0.23 7.11 56.52 0.40 0.17 16 46 H -0.26 -0.59 7.11 56.52 0.40 -0.19 16 47 H 0.14 0.08 6.30 -52.49 -0.33 -0.25 16 48 H 0.09 -0.26 6.63 -51.93 -0.34 -0.60 16 49 H 0.11 -0.31 8.03 -51.92 -0.42 -0.72 16 LS Contribution 396.98 15.07 5.98 5.98 Total: 0.00 -6.39 396.98 -7.91 -14.30 By element: Atomic # 1 Polarization: -3.91 SS G_CDS: -6.66 Total: -10.57 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.87 Total: 0.77 kcal Atomic # 8 Polarization: -2.34 SS G_CDS: -1.41 Total: -3.75 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.11 Total: -1.00 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: -5.06 Total: -5.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -6.39 -7.91 -14.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13978674_17321602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.607 kcal (2) G-P(sol) polarization free energy of solvation -6.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds