Wall clock time and date at job start Mon Mar 8 2021 08:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99703 * 2 1 4 4 C 1.52999 * 112.85204 * 293.89624 * 3 2 1 5 5 F 1.39899 * 109.47440 * 195.30433 * 4 3 2 6 6 F 1.39904 * 109.47181 * 315.30367 * 4 3 2 7 7 F 1.39895 * 109.47148 * 75.30157 * 4 3 2 8 8 C 1.53776 * 113.69081 * 162.62656 * 3 2 1 9 9 C 1.53781 * 87.08354 * 270.87331 * 8 3 2 10 10 H 1.09001 * 113.69343 * 220.00686 * 9 8 3 11 11 C 1.53001 * 113.61616 * 89.11190 * 9 8 3 12 12 O 1.42902 * 109.46735 * 87.50305 * 11 9 8 13 13 C 1.35997 * 116.99771 * 180.02562 * 12 11 9 14 14 C 1.39159 * 120.07156 * 180.02562 * 13 12 11 15 15 O 1.35997 * 120.06973 * 359.97438 * 14 13 12 16 16 C 1.42898 * 116.99663 * 174.75145 * 15 14 13 17 17 C 1.53004 * 109.46975 * 85.80278 * 16 15 14 18 18 C 1.52999 * 109.47420 * 205.80235 * 16 15 14 19 19 C 1.38566 * 119.85495 * 180.02562 * 14 13 12 20 20 C 1.38245 * 119.99435 * 0.02562 * 19 14 13 21 21 C 1.38248 * 120.14846 * 359.97438 * 20 19 14 22 22 C 1.50702 * 119.92511 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47235 * 119.99882 * 22 21 20 24 24 Si 1.86306 * 109.47045 * 359.97438 * 22 21 20 25 25 C 1.38240 * 120.14932 * 359.76848 * 21 20 19 26 26 C 1.53780 * 87.07988 * 334.56770 * 9 8 3 27 27 H 1.08996 * 109.47431 * 303.22162 * 1 2 3 28 28 H 1.09003 * 109.47347 * 63.23071 * 1 2 3 29 29 H 1.08998 * 109.46779 * 183.22556 * 1 2 3 30 30 H 1.09006 * 113.61716 * 156.32832 * 8 3 2 31 31 H 1.09000 * 113.61913 * 25.42048 * 8 3 2 32 32 H 1.09004 * 109.46784 * 327.51127 * 11 9 8 33 33 H 1.08991 * 109.47484 * 207.50288 * 11 9 8 34 34 H 1.09003 * 109.47530 * 325.81011 * 16 15 14 35 35 H 1.08999 * 109.47127 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.47444 * 300.00107 * 17 16 15 37 37 H 1.08998 * 109.47224 * 60.00318 * 17 16 15 38 38 H 1.08995 * 109.47193 * 60.00134 * 18 16 15 39 39 H 1.08999 * 109.47294 * 180.02562 * 18 16 15 40 40 H 1.08999 * 109.46871 * 300.00368 * 18 16 15 41 41 H 1.07998 * 120.00199 * 180.02562 * 19 14 13 42 42 H 1.08002 * 119.92333 * 179.97438 * 20 19 14 43 43 H 1.09000 * 109.46975 * 240.00056 * 22 21 20 44 44 H 0.96692 * 114.00253 * 299.99963 * 23 22 21 45 45 H 1.48504 * 109.99711 * 58.68692 * 24 22 21 46 46 H 1.48498 * 109.99733 * 179.97438 * 24 22 21 47 47 H 1.07999 * 120.00420 * 180.25486 * 25 21 20 48 48 H 1.08999 * 113.61468 * 139.97883 * 26 9 8 49 49 H 1.09008 * 113.61472 * 270.80061 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7301 2.0806 -1.2890 5 9 2.5951 3.1770 -1.3713 6 9 1.9334 1.2425 -2.3907 7 9 0.4056 2.5309 -1.2840 8 6 3.4892 1.3234 0.4205 9 6 2.9945 1.4857 1.8675 10 1 3.5889 2.1830 2.4579 11 6 2.7517 0.1564 2.5850 12 8 3.9664 -0.2843 3.1953 13 6 3.9232 -1.4595 3.8783 14 6 5.0692 -1.9484 4.4980 15 8 6.2350 -1.2522 4.4215 16 6 7.3403 -1.7530 5.1761 17 6 8.0794 -2.8123 4.3560 18 6 8.2959 -0.6042 5.5048 19 6 5.0202 -3.1465 5.1923 20 6 3.8347 -3.8537 5.2677 21 6 2.6962 -3.3679 4.6520 22 6 1.4064 -4.1426 4.7378 23 8 0.4092 -3.3388 5.3715 24 14 1.6788 -5.6940 5.7327 25 6 2.7369 -2.1706 3.9622 26 6 1.7186 2.1096 1.2780 27 1 -0.3634 0.5630 0.8596 28 1 -0.3634 0.4629 -0.9175 29 1 -0.3633 -1.0260 0.0578 30 1 4.0389 2.1877 0.0474 31 1 4.0063 0.3812 0.2390 32 1 2.4158 -0.5893 1.8644 33 1 1.9882 0.2912 3.3511 34 1 6.9762 -2.1990 6.1017 35 1 8.9223 -3.1947 4.9317 36 1 7.3988 -3.6308 4.1218 37 1 8.4436 -2.3665 3.4304 38 1 7.7694 0.1505 6.0890 39 1 9.1392 -0.9863 6.0800 40 1 8.6599 -0.1583 4.5792 41 1 5.9081 -3.5279 5.6745 42 1 3.7979 -4.7876 5.8088 43 1 1.0749 -4.4086 3.7341 44 1 0.6376 -3.0646 6.2701 45 1 2.1618 -5.3465 7.0934 46 1 0.4140 -6.4666 5.8253 47 1 1.8451 -1.7913 3.4856 48 1 0.8060 1.8020 1.7887 49 1 1.7835 3.1890 1.1407 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13978674_17321602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:23:32 Heat of formation + Delta-G solvation = -233.518477 kcal Electronic energy + Delta-G solvation = -36809.103556 eV Core-core repulsion = 31483.635507 eV Total energy + Delta-G solvation = -5325.468049 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.158 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -51.27661 -48.80997 -48.74594 -41.91801 -41.33259 -39.70827 -38.94053 -37.29563 -36.89019 -34.15527 -31.70885 -31.43839 -30.23495 -28.23273 -28.17693 -27.53679 -26.78019 -26.32017 -24.36259 -23.27739 -22.74918 -21.68359 -20.59480 -19.90789 -19.60396 -19.53669 -19.25115 -18.47353 -18.09537 -17.33692 -17.14789 -16.95766 -16.50010 -16.29719 -16.21228 -16.01610 -15.90301 -15.69711 -15.66304 -15.59254 -15.50843 -15.19851 -15.03265 -14.91977 -14.79609 -14.51756 -14.34299 -14.25466 -13.88549 -13.80563 -13.60007 -13.30921 -13.19557 -13.14576 -13.02825 -12.81072 -12.67652 -12.51522 -12.36814 -12.20765 -11.99242 -11.83761 -11.77833 -11.69120 -11.62184 -11.48864 -10.82730 -10.62171 -9.73369 -8.84045 -4.90261 0.20427 0.30963 1.32455 1.50867 1.61822 1.96405 2.02958 2.09242 2.20801 2.54280 2.58783 2.60758 2.87694 3.29086 3.35501 3.40805 3.47260 3.62938 3.70562 3.79321 3.88343 3.95673 4.03553 4.15125 4.21630 4.22715 4.24565 4.28964 4.31043 4.36607 4.46832 4.49664 4.57146 4.61880 4.66139 4.68438 4.70849 4.78444 4.81031 4.83152 4.85786 4.89510 5.01518 5.04343 5.16529 5.26383 5.29008 5.39255 5.63819 5.69400 6.12930 6.48635 6.60658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.345 6.345 3 C 0.038 3.962 4 C 0.433 3.567 5 F -0.176 7.176 6 F -0.188 7.188 7 F -0.184 7.184 8 C -0.113 4.113 9 C -0.093 4.093 10 H 0.110 0.890 11 C 0.070 3.930 12 O -0.318 6.318 13 C 0.083 3.917 14 C 0.093 3.907 15 O -0.320 6.320 16 C 0.068 3.932 17 C -0.178 4.178 18 C -0.148 4.148 19 C -0.170 4.170 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.079 4.079 23 O -0.547 6.547 24 Si 0.766 3.234 25 C -0.150 4.150 26 C -0.133 4.133 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.123 0.877 44 H 0.386 0.614 45 H -0.279 1.279 46 H -0.303 1.303 47 H 0.140 0.860 48 H 0.106 0.894 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -2.003 3.692 4.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.263 6.263 3 C -0.005 4.005 4 C 0.379 3.621 5 F -0.157 7.157 6 F -0.169 7.169 7 F -0.165 7.165 8 C -0.150 4.150 9 C -0.112 4.112 10 H 0.128 0.872 11 C -0.005 4.005 12 O -0.233 6.233 13 C 0.037 3.963 14 C 0.048 3.952 15 O -0.235 6.235 16 C 0.012 3.988 17 C -0.235 4.235 18 C -0.205 4.205 19 C -0.188 4.188 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.187 4.187 23 O -0.356 6.356 24 Si 0.671 3.329 25 C -0.169 4.169 26 C -0.170 4.170 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.177 0.823 42 H 0.169 0.831 43 H 0.141 0.859 44 H 0.235 0.765 45 H -0.206 1.206 46 H -0.232 1.232 47 H 0.158 0.842 48 H 0.124 0.876 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.059 -2.378 3.647 4.816 hybrid contribution -0.976 1.207 0.012 1.553 sum 1.082 -1.171 3.659 3.991 Atomic orbital electron populations 1.23286 0.78725 1.05298 1.01796 1.88080 1.22055 1.22334 1.93838 1.24141 1.00411 0.86323 0.89587 1.21493 0.74127 0.78685 0.87815 1.93171 1.69935 1.55978 1.96661 1.93189 1.94657 1.71459 1.57603 1.93179 1.36408 1.90057 1.96882 1.23302 0.90687 1.05537 0.95459 1.22011 0.97899 0.96151 0.95089 0.87158 1.22806 0.85156 0.95995 0.96552 1.86099 1.36263 1.35170 1.65732 1.18473 0.92591 0.88007 0.97189 1.18530 0.85128 0.92826 0.98752 1.86224 1.18039 1.51767 1.67446 1.22720 0.85226 0.96333 0.94479 1.22376 1.01529 0.98452 1.01152 1.21882 0.98698 0.97480 1.02482 1.21305 1.00713 0.94167 1.02660 1.20946 0.91641 1.00256 1.00117 1.20060 0.96149 0.96005 0.99712 1.25196 0.86783 1.01678 1.05089 1.86553 1.44474 1.70825 1.33699 0.94036 0.82267 0.77242 0.79362 1.20981 0.96246 0.96505 1.03124 1.23627 0.99676 1.01501 0.92229 0.91208 0.93565 0.86953 0.85764 0.89440 0.90368 0.90954 0.89714 0.89022 0.91807 0.92393 0.92284 0.88453 0.92151 0.82279 0.83116 0.85879 0.76535 1.20556 1.23181 0.84197 0.87588 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.33 113.37 1.17 1.16 16 2 O -0.35 -0.60 8.38 -148.98 -1.25 -1.84 16 3 C 0.04 0.01 0.84 -10.27 -0.01 0.00 16 4 C 0.43 1.48 2.53 71.98 0.18 1.66 16 5 F -0.18 -0.60 15.80 44.97 0.71 0.12 16 6 F -0.19 -1.39 17.11 44.97 0.77 -0.62 16 7 F -0.18 -0.67 15.32 44.97 0.69 0.02 16 8 C -0.11 0.04 6.89 31.12 0.21 0.25 16 9 C -0.09 0.17 4.20 -10.27 -0.04 0.12 16 10 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 11 C 0.07 0.07 4.33 71.98 0.31 0.38 16 12 O -0.32 -2.21 9.92 -79.65 -0.79 -3.00 16 13 C 0.08 0.53 6.70 22.57 0.15 0.68 16 14 C 0.09 0.52 6.62 22.57 0.15 0.67 16 15 O -0.32 -2.09 9.58 -79.65 -0.76 -2.85 16 16 C 0.07 -0.03 2.84 30.60 0.09 0.06 16 17 C -0.18 0.46 9.20 71.98 0.66 1.13 16 18 C -0.15 0.29 9.56 71.98 0.69 0.98 16 19 C -0.17 -0.08 8.29 22.35 0.19 0.10 16 20 C -0.11 0.12 8.66 22.27 0.19 0.31 16 21 C -0.12 -0.08 5.39 -19.86 -0.11 -0.19 16 22 C -0.08 0.07 2.82 71.24 0.20 0.27 16 23 O -0.55 -0.94 12.76 -148.98 -1.90 -2.84 16 24 Si 0.77 -2.03 29.78 68.60 2.04 0.02 16 25 C -0.15 -0.49 8.59 22.35 0.19 -0.30 16 26 C -0.13 0.55 6.52 31.12 0.20 0.75 16 27 H 0.07 -0.37 6.58 -2.39 -0.02 -0.39 16 28 H 0.05 -0.02 6.55 -2.39 -0.02 -0.04 16 29 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.12 -0.29 7.03 -2.38 -0.02 -0.31 16 31 H 0.09 0.19 8.10 -2.39 -0.02 0.17 16 32 H 0.08 0.14 5.65 -2.39 -0.01 0.13 16 33 H 0.07 -0.07 7.66 -2.39 -0.02 -0.09 16 34 H 0.09 -0.28 6.25 -2.39 -0.01 -0.30 16 35 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.06 -0.16 7.02 -2.39 -0.02 -0.17 16 37 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.16 -0.67 5.47 -2.91 -0.02 -0.69 16 42 H 0.15 -0.88 4.87 -2.91 -0.01 -0.90 16 43 H 0.12 -0.27 7.96 -2.39 -0.02 -0.29 16 44 H 0.39 -1.36 8.70 -74.06 -0.64 -2.01 16 45 H -0.28 -0.18 7.11 99.48 0.71 0.52 16 46 H -0.30 -1.57 7.11 99.48 0.71 -0.87 16 47 H 0.14 0.26 6.30 -2.91 -0.02 0.24 16 48 H 0.11 -0.67 6.63 -2.39 -0.02 -0.68 16 49 H 0.12 -0.78 8.03 -2.38 -0.02 -0.80 16 Total: 0.00 -15.97 396.98 4.34 -11.63 By element: Atomic # 1 Polarization: -9.06 SS G_CDS: 0.40 Total: -8.66 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 4.43 Total: 8.04 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -4.70 Total: -10.54 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 2.17 Total: -0.49 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: 2.04 Total: 0.02 kcal Total: -15.97 4.34 -11.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13978674_17321602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.892 kcal (2) G-P(sol) polarization free energy of solvation -15.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds