Wall clock time and date at job start Mon Mar 8 2021 09:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 O 1.42905 * 109.46703 * 119.99511 * 2 1 3 5 5 C 1.35997 * 116.99985 * 154.99533 * 4 2 1 6 6 C 1.38527 * 120.06729 * 5.48935 * 5 4 2 7 7 C 1.38286 * 119.99470 * 179.97438 * 6 5 4 8 8 C 1.38206 * 120.14822 * 359.97226 * 7 6 5 9 9 C 1.50707 * 119.92682 * 180.02562 * 8 7 6 10 10 O 1.42903 * 109.47037 * 120.00169 * 9 8 7 11 11 Si 1.86295 * 109.47052 * 359.97438 * 9 8 7 12 12 H 1.48504 * 109.47088 * 299.99930 * 11 9 8 13 13 H 1.48495 * 109.47316 * 60.00029 * 11 9 8 14 14 H 1.48500 * 109.46807 * 180.02562 * 11 9 8 15 15 C 1.38285 * 120.14927 * 359.76996 * 8 7 6 16 16 C 1.38528 * 119.99122 * 0.51184 * 15 8 7 17 17 O 1.36004 * 120.06687 * 179.74189 * 16 15 8 18 18 C 1.42896 * 117.00391 * 359.72538 * 17 16 15 19 19 C 1.50696 * 109.47436 * 179.97438 * 18 17 16 20 20 C 1.38239 * 119.99577 * 89.99767 * 19 18 17 21 21 C 1.38234 * 119.99684 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99864 * 0.25040 * 21 20 19 23 23 Si 1.86802 * 119.99753 * 179.72921 * 22 21 20 24 24 C 1.86296 * 109.47401 * 90.00529 * 23 22 21 25 25 C 1.86300 * 109.47049 * 210.00399 * 23 22 21 26 26 C 1.86302 * 109.47135 * 330.00130 * 23 22 21 27 27 C 1.38230 * 120.00272 * 359.49836 * 22 21 20 28 28 C 1.38230 * 120.00340 * 270.02386 * 19 18 17 29 29 H 1.09003 * 109.47620 * 300.00572 * 1 2 3 30 30 H 1.09004 * 109.47321 * 60.00505 * 1 2 3 31 31 H 1.09004 * 109.47277 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47274 * 239.99034 * 2 1 3 33 33 H 1.08998 * 109.47121 * 299.99458 * 3 2 1 34 34 H 1.08993 * 109.47213 * 59.99802 * 3 2 1 35 35 H 1.09003 * 109.47281 * 179.97438 * 3 2 1 36 36 H 1.07997 * 120.00420 * 359.97438 * 6 5 4 37 37 H 1.08001 * 119.92784 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.46565 * 239.99698 * 9 8 7 39 39 H 0.96700 * 113.99782 * 179.97438 * 10 9 8 40 40 H 1.07998 * 120.00471 * 180.25435 * 15 8 7 41 41 H 1.09003 * 109.47115 * 59.99627 * 18 17 16 42 42 H 1.09003 * 109.46810 * 300.00228 * 18 17 16 43 43 H 1.07992 * 120.00196 * 0.02562 * 20 19 18 44 44 H 1.07994 * 120.00292 * 179.97438 * 21 20 19 45 45 H 1.09001 * 109.46883 * 59.99236 * 24 23 22 46 46 H 1.08995 * 109.47580 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47065 * 300.00144 * 24 23 22 48 48 H 1.08998 * 109.47680 * 59.99798 * 25 23 22 49 49 H 1.08997 * 109.47392 * 180.02562 * 25 23 22 50 50 H 1.09003 * 109.47167 * 300.00142 * 25 23 22 51 51 H 1.08989 * 109.47112 * 60.00258 * 26 23 22 52 52 H 1.09003 * 109.47027 * 179.97438 * 26 23 22 53 53 H 1.08998 * 109.46891 * 299.99772 * 26 23 22 54 54 H 1.08002 * 120.00749 * 180.23830 * 27 22 21 55 55 H 1.08009 * 119.99647 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 3.2474 -1.2252 1.0980 6 6 4.0351 -1.0240 -0.0236 7 6 5.2971 -1.5852 -0.0918 8 6 5.7757 -2.3468 0.9574 9 6 7.1521 -2.9556 0.8781 10 8 7.9541 -2.4617 1.9528 11 14 7.9404 -2.4987 -0.7469 12 1 7.1067 -3.0124 -1.8633 13 1 8.0462 -1.0209 -0.8475 14 1 9.2963 -3.0991 -0.8253 15 6 4.9966 -2.5472 2.0822 16 6 3.7292 -1.9927 2.1545 17 8 2.9596 -2.1931 3.2578 18 6 3.5190 -2.9912 4.3028 19 6 2.5302 -3.1019 5.4346 20 6 1.6122 -4.1353 5.4517 21 6 0.7048 -4.2366 6.4896 22 6 0.7120 -3.3015 7.5076 23 14 -0.5192 -3.4340 8.9062 24 6 0.2047 -4.4703 10.2747 25 6 -0.9072 -1.7314 9.5554 26 6 -2.0830 -4.2324 8.2834 27 6 1.6333 -2.2711 7.4932 28 6 2.5407 -2.1698 6.4553 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8898 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 3.6636 -0.4289 -0.8447 37 1 5.9104 -1.4273 -0.9666 38 1 7.0742 -4.0404 0.9515 39 1 8.8551 -2.8125 1.9645 40 1 5.3746 -3.1393 2.9025 41 1 4.4351 -2.5249 4.6654 42 1 3.7452 -3.9860 3.9187 43 1 1.6040 -4.8635 4.6542 44 1 -0.0126 -5.0436 6.5028 45 1 1.1197 -4.0031 10.6390 46 1 -0.5138 -4.5480 11.0906 47 1 0.4318 -5.4664 9.8949 48 1 -1.3307 -1.1250 8.7548 49 1 -1.6252 -1.8087 10.3718 50 1 0.0078 -1.2643 9.9198 51 1 -1.8560 -5.2284 7.9036 52 1 -2.8012 -4.3101 9.0996 53 1 -2.5065 -3.6260 7.4828 54 1 1.6416 -1.5427 8.2905 55 1 3.2580 -1.3624 6.4418 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_13978674_9403676.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:17 Heat of formation + Delta-G solvation = -95.390802 kcal Electronic energy + Delta-G solvation = -31598.953630 eV Core-core repulsion = 27497.171841 eV Total energy + Delta-G solvation = -4101.781789 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 374.187 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.83489 -40.39332 -39.54754 -38.75546 -37.12424 -34.28064 -33.07929 -31.89847 -31.82706 -30.94901 -29.44151 -28.30031 -28.27019 -28.25398 -27.61996 -26.25135 -24.27286 -23.49976 -22.79004 -22.24584 -21.47094 -19.71323 -18.65561 -18.25946 -17.93180 -17.28055 -17.14264 -16.47089 -16.30214 -16.06122 -15.92528 -15.80229 -15.49789 -15.28714 -14.65613 -14.44188 -14.35823 -14.33252 -14.05870 -14.04981 -13.83289 -13.80088 -13.72104 -13.56514 -13.39686 -13.30561 -13.15951 -13.13695 -13.11519 -12.97040 -12.89933 -12.60744 -12.51010 -12.30825 -12.19525 -12.02681 -11.86485 -11.78167 -11.71736 -11.57712 -10.92468 -10.78736 -10.76268 -10.33948 -9.82441 -9.78615 -9.69780 -8.89957 0.14699 0.15015 0.22513 0.50536 1.15948 1.46052 1.51586 1.82851 1.90714 1.99093 2.02184 2.15076 2.29326 2.50497 2.66366 3.00501 3.40859 3.59922 3.71603 3.78801 3.79891 3.83903 3.87914 3.95938 4.07406 4.10556 4.20993 4.21754 4.22562 4.33723 4.46787 4.51443 4.56724 4.63859 4.69636 4.74871 4.80024 4.83238 4.84629 4.84838 4.88453 4.89121 4.89513 4.90933 4.95838 4.98643 5.07450 5.14355 5.18711 5.22208 5.33795 5.38896 5.55256 5.56063 5.58936 5.58981 5.67983 5.70060 6.05409 6.11248 6.53961 6.81578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 C -0.178 4.178 4 O -0.321 6.321 5 C 0.092 3.908 6 C -0.168 4.168 7 C -0.128 4.128 8 C -0.084 4.084 9 C -0.081 4.081 10 O -0.563 6.563 11 Si 0.980 3.020 12 H -0.255 1.255 13 H -0.270 1.270 14 H -0.254 1.254 15 C -0.147 4.147 16 C 0.081 3.919 17 O -0.317 6.317 18 C 0.099 3.901 19 C -0.102 4.102 20 C -0.122 4.122 21 C -0.103 4.103 22 C -0.374 4.374 23 Si 1.127 2.873 24 C -0.460 4.460 25 C -0.463 4.463 26 C -0.462 4.462 27 C -0.103 4.103 28 C -0.124 4.124 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.159 0.841 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.398 0.602 40 H 0.148 0.852 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.142 0.858 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.076 0.924 53 H 0.066 0.934 54 H 0.140 0.860 55 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 -1.791 -0.930 2.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 C -0.235 4.235 4 O -0.236 6.236 5 C 0.046 3.954 6 C -0.186 4.186 7 C -0.145 4.145 8 C -0.084 4.084 9 C -0.191 4.191 10 O -0.372 6.372 11 Si 0.804 3.196 12 H -0.179 1.179 13 H -0.194 1.194 14 H -0.178 1.178 15 C -0.166 4.166 16 C 0.036 3.964 17 O -0.232 6.232 18 C 0.025 3.975 19 C -0.102 4.102 20 C -0.140 4.140 21 C -0.120 4.120 22 C -0.413 4.413 23 Si 1.314 2.686 24 C -0.567 4.567 25 C -0.570 4.570 26 C -0.569 4.569 27 C -0.121 4.121 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.114 0.886 39 H 0.249 0.751 40 H 0.165 0.835 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.095 0.905 53 H 0.085 0.915 54 H 0.158 0.842 55 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.014 -1.175 -1.440 1.858 hybrid contribution 0.761 -0.273 -0.019 0.809 sum 0.747 -1.448 -1.459 2.187 Atomic orbital electron populations 1.21876 0.91628 1.03078 1.03807 1.22740 0.96232 0.93018 0.86881 1.22383 1.01836 0.95460 1.03856 1.86233 1.28711 1.68516 1.40118 1.18490 0.86675 0.96365 0.93875 1.21243 0.95107 1.04357 0.97940 1.20923 0.96295 0.98064 0.99258 1.19280 0.95433 0.99351 0.94340 1.24777 0.91113 1.01283 1.01884 1.86463 1.28683 1.72078 1.49985 0.85270 0.79384 0.79961 0.75004 1.17867 1.19442 1.17797 1.21017 0.91972 1.03338 1.00268 1.18531 0.91543 0.98825 0.87537 1.86231 1.42813 1.68769 1.25388 1.21727 0.95270 0.95462 0.85036 1.19616 0.98290 0.97073 0.95258 1.21367 0.95207 0.98181 0.99211 1.21399 0.97800 0.99244 0.93583 1.28127 1.07385 0.95932 1.09855 0.77188 0.63138 0.66080 0.62219 1.26247 1.07160 1.09674 1.13584 1.26287 1.05535 1.18555 1.06627 1.26269 1.16355 1.07690 1.06589 1.21384 0.94425 0.98405 0.97865 1.21362 0.99864 0.98070 0.94877 0.92272 0.88182 0.92221 0.89654 0.88762 0.92372 0.92239 0.82318 0.84386 0.88601 0.75112 0.83480 0.90589 0.90076 0.85532 0.84075 0.91358 0.90522 0.91290 0.91522 0.90489 0.90941 0.90834 0.90490 0.91486 0.84244 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.09 9.56 71.98 0.69 0.59 16 2 C 0.07 0.19 2.85 30.59 0.09 0.27 16 3 C -0.18 -0.11 9.17 71.98 0.66 0.55 16 4 O -0.32 -3.39 9.59 -79.67 -0.76 -4.16 16 5 C 0.09 0.90 6.61 22.57 0.15 1.05 16 6 C -0.17 -0.87 8.25 22.35 0.18 -0.69 16 7 C -0.13 -0.57 8.66 22.27 0.19 -0.38 16 8 C -0.08 -0.42 5.43 -19.86 -0.11 -0.53 16 9 C -0.08 0.02 2.81 71.24 0.20 0.22 16 10 O -0.56 -0.29 12.74 -148.98 -1.90 -2.19 16 11 Si 0.98 -1.23 25.07 68.60 1.72 0.49 16 12 H -0.25 0.14 7.11 99.48 0.71 0.84 16 13 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 14 H -0.25 0.47 7.11 99.48 0.71 1.18 16 15 C -0.15 -1.02 8.60 22.35 0.19 -0.82 16 16 C 0.08 0.86 6.70 22.57 0.15 1.01 16 17 O -0.32 -3.84 9.91 -79.75 -0.79 -4.63 16 18 C 0.10 0.61 4.87 71.23 0.35 0.96 16 19 C -0.10 -0.73 5.51 -19.87 -0.11 -0.84 16 20 C -0.12 -0.69 9.70 22.27 0.22 -0.47 16 21 C -0.10 -0.31 9.29 22.27 0.21 -0.10 16 22 C -0.37 -0.63 4.59 22.27 0.10 -0.53 16 23 Si 1.13 -4.86 12.32 68.60 0.85 -4.01 16 24 C -0.46 1.34 8.65 113.37 0.98 2.32 16 25 C -0.46 1.28 8.54 113.37 0.97 2.24 16 26 C -0.46 1.41 8.53 113.37 0.97 2.38 16 27 C -0.10 -0.36 9.29 22.27 0.21 -0.15 16 28 C -0.12 -0.78 9.70 22.27 0.22 -0.57 16 29 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.10 -0.41 8.14 -2.38 -0.02 -0.43 16 31 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 32 H 0.09 -0.02 6.31 -2.39 -0.02 -0.03 16 33 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.06 0.09 6.92 -2.39 -0.02 0.07 16 36 H 0.16 0.03 5.43 -2.91 -0.02 0.02 16 37 H 0.14 0.10 4.86 -2.91 -0.01 0.09 16 38 H 0.10 -0.43 7.96 -2.38 -0.02 -0.45 16 39 H 0.40 -3.51 8.74 -74.06 -0.65 -4.15 16 40 H 0.15 0.58 6.30 -2.91 -0.02 0.56 16 41 H 0.08 0.32 7.59 -2.39 -0.02 0.31 16 42 H 0.08 0.24 7.62 -2.39 -0.02 0.22 16 43 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 44 H 0.14 -0.24 7.43 -2.91 -0.02 -0.26 16 45 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 46 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 47 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 48 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 49 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 50 H 0.07 -0.23 7.69 -2.39 -0.02 -0.24 16 51 H 0.07 -0.27 7.68 -2.39 -0.02 -0.28 16 52 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 53 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 54 H 0.14 -0.14 7.44 -2.91 -0.02 -0.16 16 55 H 0.12 0.55 8.06 -2.91 -0.02 0.53 16 Total: 0.00 -17.90 442.79 6.59 -11.31 By element: Atomic # 1 Polarization: -4.30 SS G_CDS: 0.98 Total: -3.32 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.50 Total: 6.51 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -3.45 Total: -10.98 kcal Atomic # 14 Polarization: -6.09 SS G_CDS: 2.56 Total: -3.53 kcal Total: -17.90 6.59 -11.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_13978674_9403676.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.083 kcal (2) G-P(sol) polarization free energy of solvation -17.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds