Wall clock time and date at job start Mon Mar 8 2021 08:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47274 * 2 1 4 4 C 1.53005 * 109.47245 * 239.99989 * 2 1 3 5 5 O 1.42901 * 109.47329 * 119.99794 * 2 1 3 6 6 C 1.42898 * 114.00093 * 60.00150 * 5 2 1 7 7 H 1.09005 * 112.84621 * 341.19619 * 6 5 2 8 8 C 1.53955 * 113.74639 * 112.40253 * 6 5 2 9 9 C 1.53777 * 87.01968 * 139.94823 * 8 6 5 10 10 H 1.08996 * 113.61949 * 89.23461 * 9 8 6 11 11 C 1.53003 * 113.61000 * 220.05028 * 9 8 6 12 12 O 1.42899 * 109.47059 * 274.13264 * 11 9 8 13 13 C 1.36015 * 116.99851 * 179.97438 * 12 11 9 14 14 C 1.38810 * 120.07130 * 269.72622 * 13 12 11 15 15 F 1.35102 * 120.03635 * 0.02562 * 14 13 12 16 16 C 1.38394 * 119.93024 * 179.79053 * 14 13 12 17 17 C 1.50702 * 119.96801 * 180.22772 * 16 14 13 18 18 O 1.42899 * 109.47317 * 285.23729 * 17 16 14 19 19 Si 1.86299 * 109.46989 * 165.23343 * 17 16 14 20 20 C 1.38240 * 120.06918 * 0.46601 * 16 14 13 21 21 C 1.38275 * 120.13506 * 359.78902 * 20 16 14 22 22 C 1.38349 * 120.07146 * 359.97438 * 21 20 16 23 23 F 1.35097 * 120.03180 * 179.97438 * 22 21 20 24 24 C 1.53777 * 113.61693 * 210.00496 * 6 5 2 25 25 H 1.08997 * 109.47440 * 299.99918 * 1 2 3 26 26 H 1.09001 * 109.47662 * 60.00160 * 1 2 3 27 27 H 1.09002 * 109.47172 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47170 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46958 * 300.00055 * 3 2 1 30 30 H 1.08997 * 109.46820 * 59.99703 * 3 2 1 31 31 H 1.09002 * 109.46849 * 299.99969 * 4 2 1 32 32 H 1.08995 * 109.47252 * 60.00012 * 4 2 1 33 33 H 1.09001 * 109.46905 * 180.02562 * 4 2 1 34 34 H 1.08996 * 113.61144 * 25.41984 * 8 6 5 35 35 H 1.09009 * 113.66428 * 254.47723 * 8 6 5 36 36 H 1.09003 * 109.47131 * 154.13359 * 11 9 8 37 37 H 1.09000 * 109.47592 * 34.13507 * 11 9 8 38 38 H 1.09001 * 109.46400 * 45.23732 * 17 16 14 39 39 H 0.96694 * 113.99741 * 179.97438 * 18 17 16 40 40 H 1.48497 * 110.00105 * 298.68268 * 19 17 16 41 41 H 1.48494 * 110.00061 * 60.00518 * 19 17 16 42 42 H 1.07991 * 119.92887 * 179.76167 * 20 16 14 43 43 H 1.07998 * 119.95913 * 180.02562 * 21 20 16 44 44 H 1.08996 * 113.61702 * 105.38196 * 24 6 5 45 45 H 1.08998 * 113.69101 * 334.49017 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2646 7 1 0.7236 -2.2582 0.6345 8 6 2.7321 -3.0516 1.1192 9 6 2.0541 -3.8564 2.2405 10 1 1.3213 -4.5776 1.8787 11 6 3.0396 -4.4624 3.2418 12 8 3.4993 -5.7243 2.7536 13 6 4.3884 -6.4000 3.5301 14 6 5.7517 -6.2011 3.3604 15 9 6.1974 -5.3354 2.4239 16 6 6.6537 -6.8870 4.1550 17 6 8.1338 -6.6679 3.9750 18 8 8.5722 -7.3292 2.7866 19 14 9.0471 -7.3600 5.4439 20 6 6.1985 -7.7765 5.1102 21 6 4.8413 -7.9807 5.2780 22 6 3.9344 -7.2945 4.4902 23 9 2.6085 -7.4950 4.6544 24 6 1.4332 -2.5310 2.7124 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 3.7073 -2.6516 1.3969 35 1 2.7425 -3.5653 0.1578 36 1 2.5420 -4.6034 4.2014 37 1 3.8886 -3.7906 3.3681 38 1 8.3354 -5.5999 3.8920 39 1 9.5172 -7.2301 2.6072 40 1 8.6232 -6.6584 6.6822 41 1 8.7803 -8.8155 5.5681 42 1 6.9045 -8.3134 5.7264 43 1 4.4888 -8.6761 6.0254 44 1 0.3965 -2.6251 3.0355 45 1 2.0519 -1.9892 3.4277 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_14032924_14598386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:01 Heat of formation + Delta-G solvation = -145.267542 kcal Electronic energy + Delta-G solvation = -28774.610987 eV Core-core repulsion = 24396.643573 eV Total energy + Delta-G solvation = -4377.967415 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.30451 -50.26988 -41.27233 -40.73927 -39.39169 -38.18696 -37.39410 -33.97235 -32.53902 -31.71691 -29.34063 -28.38868 -28.27289 -26.90532 -26.70394 -24.52286 -23.72683 -22.94049 -20.91986 -20.70705 -19.68949 -19.12276 -18.82335 -18.55807 -17.92607 -17.43943 -17.08600 -16.72571 -16.59227 -16.57548 -16.32794 -16.07194 -15.90780 -15.64640 -15.36705 -15.13919 -14.58486 -14.43695 -14.29827 -14.06089 -13.89595 -13.55195 -13.46852 -13.34862 -13.21440 -13.12156 -12.97818 -12.82705 -12.69054 -12.45825 -12.34491 -12.19914 -12.00954 -11.76847 -11.64769 -11.32359 -11.12750 -10.41771 -10.40822 -10.15847 -10.07593 -4.92803 -0.60786 -0.46601 1.21490 1.64758 1.73397 1.91609 2.10596 2.47088 2.70849 3.02789 3.11838 3.33297 3.40802 3.47930 3.54270 3.69898 3.71140 3.86206 3.87022 3.92595 3.95643 4.04741 4.08535 4.10595 4.23938 4.32044 4.41011 4.45197 4.49470 4.58543 4.58985 4.64064 4.69124 4.70296 4.72519 4.75380 4.80630 4.87451 4.90115 4.94241 5.06802 5.10403 5.18353 5.26361 5.29850 5.34476 6.01047 6.36703 6.81518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.097 3.903 3 C -0.139 4.139 4 C -0.174 4.174 5 O -0.380 6.380 6 C 0.064 3.936 7 H 0.103 0.897 8 C -0.148 4.148 9 C -0.104 4.104 10 H 0.108 0.892 11 C 0.074 3.926 12 O -0.332 6.332 13 C 0.018 3.982 14 C 0.116 3.884 15 F -0.125 7.125 16 C -0.117 4.117 17 C -0.096 4.096 18 O -0.564 6.564 19 Si 0.794 3.206 20 C -0.074 4.074 21 C -0.131 4.131 22 C 0.104 3.896 23 F -0.125 7.125 24 C -0.120 4.120 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.406 0.594 40 H -0.278 1.278 41 H -0.272 1.272 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.091 0.909 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 0.684 2.158 3.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.059 3.941 3 C -0.196 4.196 4 C -0.232 4.232 5 O -0.300 6.300 6 C 0.006 3.994 7 H 0.120 0.880 8 C -0.186 4.186 9 C -0.123 4.123 10 H 0.126 0.874 11 C 0.000 4.000 12 O -0.249 6.249 13 C -0.028 4.028 14 C 0.096 3.904 15 F -0.104 7.104 16 C -0.119 4.119 17 C -0.203 4.203 18 O -0.375 6.375 19 Si 0.696 3.304 20 C -0.091 4.091 21 C -0.150 4.150 22 C 0.084 3.916 23 F -0.103 7.103 24 C -0.157 4.157 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.258 0.742 40 H -0.204 1.204 41 H -0.199 1.199 42 H 0.179 0.821 43 H 0.200 0.800 44 H 0.110 0.890 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.394 0.231 2.796 3.688 hybrid contribution -0.848 0.350 -0.701 1.155 sum 1.545 0.581 2.095 2.668 Atomic orbital electron populations 1.22446 0.94791 1.02778 1.03370 1.21702 0.93832 0.93368 0.85238 1.21793 1.01587 0.93122 1.03112 1.22451 1.01736 1.00922 0.98069 1.88009 1.74302 1.23997 1.43709 1.23654 0.96953 0.81192 0.97582 0.87959 1.23598 0.99099 0.96800 0.99070 1.22286 0.97674 0.96002 0.96290 0.87415 1.23006 0.97110 0.81929 0.97907 1.86132 1.59174 1.34515 1.45105 1.18785 0.88091 0.99197 0.96692 1.17740 0.90670 0.92272 0.89715 1.91510 1.89512 1.66881 1.62449 1.19873 0.95847 0.98701 0.97456 1.25089 0.92605 1.02132 1.00481 1.86454 1.32274 1.75826 1.42899 0.93577 0.88228 0.76943 0.71695 1.21049 0.95895 0.95493 0.96686 1.21441 0.91766 1.01040 1.00724 1.17920 0.78688 0.98716 0.96267 1.91540 1.30789 1.93588 1.94421 1.23185 1.02407 0.93399 0.96743 0.92014 0.90303 0.91899 0.92483 0.89630 0.92144 0.92271 0.90396 0.92595 0.90400 0.91111 0.91508 0.92469 0.89843 0.74215 1.20399 1.19883 0.82063 0.79971 0.89006 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.11 8.38 71.98 0.60 0.72 16 2 C 0.10 0.18 1.11 -10.79 -0.01 0.17 16 3 C -0.14 -0.11 8.84 71.98 0.64 0.53 16 4 C -0.17 -0.13 8.38 71.98 0.60 0.48 16 5 O -0.38 -2.14 10.00 -148.98 -1.49 -3.63 16 6 C 0.06 0.15 2.82 31.18 0.09 0.24 16 7 H 0.10 0.00 5.54 -2.38 -0.01 -0.01 16 8 C -0.15 -0.59 7.48 31.18 0.23 -0.36 16 9 C -0.10 -0.28 4.00 -10.27 -0.04 -0.32 16 10 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 11 C 0.07 0.39 5.89 71.98 0.42 0.81 16 12 O -0.33 -3.45 9.79 -93.72 -0.92 -4.37 16 13 C 0.02 0.17 5.74 22.55 0.13 0.30 16 14 C 0.12 1.04 7.25 22.44 0.16 1.21 16 15 F -0.13 -1.45 16.60 44.97 0.75 -0.70 16 16 C -0.12 -0.57 5.30 -19.83 -0.11 -0.67 16 17 C -0.10 0.02 2.44 71.24 0.17 0.20 16 18 O -0.56 -0.49 12.86 -148.98 -1.92 -2.41 16 19 Si 0.79 -4.42 30.19 68.60 2.07 -2.35 16 20 C -0.07 -0.11 8.66 22.28 0.19 0.08 16 21 C -0.13 -0.13 10.02 22.31 0.22 0.09 16 22 C 0.10 0.64 7.31 22.44 0.16 0.81 16 23 F -0.13 -0.95 17.11 44.97 0.77 -0.18 16 24 C -0.12 -0.11 7.48 31.12 0.23 0.13 16 25 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.06 -0.08 6.24 -2.39 -0.01 -0.10 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.08 -0.21 8.14 -2.38 -0.02 -0.23 16 30 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.06 0.04 7.02 -2.39 -0.02 0.02 16 32 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.08 0.51 7.92 -2.39 -0.02 0.49 16 35 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 36 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.06 0.31 7.88 -2.39 -0.02 0.29 16 38 H 0.08 -0.17 7.91 -2.39 -0.02 -0.19 16 39 H 0.41 -4.08 8.74 -74.06 -0.65 -4.72 16 40 H -0.28 0.28 7.11 99.48 0.71 0.99 16 41 H -0.27 0.32 6.74 99.48 0.67 0.99 16 42 H 0.16 -0.38 4.89 -2.92 -0.01 -0.39 16 43 H 0.18 -0.96 8.06 -2.91 -0.02 -0.98 16 44 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.09 0.16 8.10 -2.39 -0.02 0.14 16 Total: 0.00 -15.83 373.34 3.33 -12.50 By element: Atomic # 1 Polarization: -3.62 SS G_CDS: 0.36 Total: -3.26 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 3.71 Total: 4.40 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -4.32 Total: -10.41 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 1.52 Total: -0.88 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: 2.07 Total: -2.35 kcal Total: -15.83 3.33 -12.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14032924_14598386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.767 kcal (2) G-P(sol) polarization free energy of solvation -15.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds