Wall clock time and date at job start Mon Mar 8 2021 08:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38230 * 119.96127 * 254.99735 * 4 2 1 6 6 C 1.38274 * 120.13577 * 179.97438 * 5 4 2 7 7 C 1.38356 * 120.06924 * 0.03954 * 6 5 4 8 8 F 1.35097 * 120.03212 * 179.97438 * 7 6 5 9 9 C 1.38850 * 119.93183 * 359.97438 * 7 6 5 10 10 O 1.36012 * 120.07285 * 179.97438 * 9 7 6 11 11 C 1.42897 * 117.00075 * 89.99851 * 10 9 7 12 12 C 1.52999 * 109.47212 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47319 * 54.99616 * 12 11 10 14 14 C 1.52993 * 109.47108 * 175.00059 * 12 11 10 15 15 C 1.53000 * 109.47344 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47200 * 300.00136 * 15 14 12 17 17 H 1.09004 * 109.46776 * 300.00108 * 16 15 14 18 18 O 1.42900 * 109.47637 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.47375 * 59.99520 * 16 15 14 20 20 C 1.53002 * 109.46711 * 294.99624 * 12 11 10 21 21 C 1.38389 * 119.96628 * 74.72628 * 4 2 1 22 22 F 1.35102 * 120.03432 * 359.97438 * 21 4 2 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 25 25 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 26 26 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 27 27 H 1.07997 * 119.93324 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.96718 * 180.02562 * 6 5 4 29 29 H 1.09010 * 109.47118 * 300.00107 * 11 10 9 30 30 H 1.08992 * 109.47174 * 60.00167 * 11 10 9 31 31 H 1.09004 * 109.47458 * 299.99947 * 14 12 11 32 32 H 1.09000 * 109.47392 * 59.99601 * 14 12 11 33 33 H 1.09000 * 109.46954 * 59.99636 * 15 14 12 34 34 H 1.09000 * 109.47321 * 180.02562 * 15 14 12 35 35 H 0.96696 * 114.00017 * 179.97438 * 18 16 15 36 36 H 1.08999 * 109.46826 * 59.99830 * 19 16 15 37 37 H 1.08999 * 109.47204 * 180.02562 * 19 16 15 38 38 H 1.09000 * 109.47222 * 300.00051 * 20 12 11 39 39 H 1.09000 * 109.46987 * 60.00378 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4535 0.0176 2.2832 6 6 2.9148 -0.6304 3.4142 7 6 2.8556 -2.0103 3.4952 8 9 3.3070 -2.6428 4.6004 9 6 2.3317 -2.7445 2.4395 10 8 2.2726 -4.1012 2.5158 11 6 1.0849 -4.6685 3.0721 12 6 1.2018 -6.1940 3.0760 13 1 2.1108 -6.4874 3.6011 14 6 -0.0132 -6.7967 3.7839 15 6 0.1033 -8.3223 3.7873 16 6 0.1589 -8.8327 2.3461 17 1 -0.7501 -8.5388 1.8212 18 8 0.2684 -10.2575 2.3491 19 6 1.3740 -8.2299 1.6380 20 6 1.2577 -6.7048 1.6349 21 6 1.8638 -2.0905 1.3080 22 9 1.3476 -2.8009 0.2812 23 1 -0.3934 0.4418 0.7650 24 1 1.7924 -0.5139 -0.8899 25 1 3.5346 1.7702 0.0322 26 1 1.5616 2.4678 -1.2086 27 1 2.5014 1.0948 2.2220 28 1 3.3220 -0.0589 4.2351 29 1 0.9560 -4.3117 4.0941 30 1 0.2248 -4.3712 2.4723 31 1 -0.0532 -6.4328 4.8106 32 1 -0.9223 -6.5033 3.2589 33 1 1.0123 -8.6161 4.3121 34 1 -0.7626 -8.7517 4.2912 35 1 0.3083 -10.6508 1.4666 36 1 2.2830 -8.5237 2.1629 37 1 1.4134 -8.5932 0.6111 38 1 0.3487 -6.4113 1.1099 39 1 2.1233 -6.2754 1.1305 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_14032924_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:30:46 Heat of formation + Delta-G solvation = -192.381553 kcal Electronic energy + Delta-G solvation = -25179.320610 eV Core-core repulsion = 21110.385416 eV Total energy + Delta-G solvation = -4068.935194 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.20375 -50.15303 -41.04446 -40.21180 -39.11028 -37.48145 -36.69642 -32.53169 -32.06112 -31.89351 -30.81656 -26.87164 -26.61009 -24.26007 -23.76672 -23.02136 -22.37973 -20.94679 -19.63305 -19.03192 -18.80179 -18.24738 -17.94239 -17.61273 -16.82890 -16.69669 -16.58993 -16.28261 -16.13242 -15.78913 -15.57847 -15.55772 -15.48801 -14.76448 -14.65599 -14.51844 -14.09287 -13.87127 -13.49035 -13.36131 -13.25255 -13.12697 -12.88479 -12.50776 -12.26728 -12.18964 -12.10401 -11.76552 -11.71397 -11.29680 -11.10893 -10.77620 -10.54570 -9.99930 -9.93791 -5.02264 -0.43517 -0.31660 1.21819 1.67935 1.86782 2.00415 2.30253 2.61052 3.17222 3.18163 3.31820 3.48896 3.55708 3.62608 3.63895 3.73200 3.82926 4.00872 4.05456 4.11294 4.21861 4.26257 4.29451 4.40630 4.41921 4.44354 4.53762 4.57223 4.70819 4.74367 4.76526 4.88305 4.90800 4.99669 5.01648 5.08221 5.11479 5.24434 5.34308 5.39403 6.12629 6.72869 6.81172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.087 4.087 3 Si 0.810 3.190 4 C -0.153 4.153 5 C -0.048 4.048 6 C -0.128 4.128 7 C 0.100 3.900 8 F -0.131 7.131 9 C 0.011 3.989 10 O -0.336 6.336 11 C 0.067 3.933 12 C -0.082 4.082 13 H 0.075 0.925 14 C -0.103 4.103 15 C -0.112 4.112 16 C 0.102 3.898 17 H 0.063 0.937 18 O -0.588 6.588 19 C -0.146 4.146 20 C -0.107 4.107 21 C 0.109 3.891 22 F -0.134 7.134 23 H 0.398 0.602 24 H 0.096 0.904 25 H -0.275 1.275 26 H -0.300 1.300 27 H 0.192 0.808 28 H 0.187 0.813 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 6.308 2.907 7.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.194 4.194 3 Si 0.713 3.287 4 C -0.155 4.155 5 C -0.065 4.065 6 C -0.147 4.147 7 C 0.080 3.920 8 F -0.109 7.109 9 C -0.035 4.035 10 O -0.253 6.253 11 C -0.006 4.006 12 C -0.101 4.101 13 H 0.094 0.906 14 C -0.140 4.140 15 C -0.149 4.149 16 C 0.043 3.957 17 H 0.081 0.919 18 O -0.397 6.397 19 C -0.184 4.184 20 C -0.144 4.144 21 C 0.089 3.911 22 F -0.112 7.112 23 H 0.249 0.751 24 H 0.114 0.886 25 H -0.201 1.201 26 H -0.228 1.228 27 H 0.208 0.792 28 H 0.205 0.795 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.872 6.450 2.537 6.985 hybrid contribution 0.061 -1.459 -1.067 1.809 sum -0.811 4.990 1.470 5.265 Atomic orbital electron populations 1.86538 1.16852 1.82304 1.50556 1.25456 0.85733 1.12549 0.95661 0.93762 0.77743 0.72049 0.85180 1.20685 1.03809 0.91095 0.99907 1.21166 0.93825 1.01659 0.89877 1.21569 1.01194 0.90547 1.01371 1.18089 0.99692 0.91624 0.82618 1.91534 1.86390 1.82807 1.50192 1.18841 1.05812 0.84694 0.94151 1.86113 1.41135 1.14900 1.83184 1.23047 0.85345 0.94244 0.97991 1.21174 1.00258 0.91257 0.97363 0.90635 1.21431 0.97085 0.93899 1.01591 1.21453 1.02983 0.95152 0.95353 1.21893 0.96764 0.80100 0.96911 0.91936 1.86475 1.97041 1.20523 1.35644 1.22210 0.99141 0.95707 1.01321 1.21434 1.02254 0.94838 0.95895 1.17879 0.98024 0.89856 0.85316 1.91502 1.84224 1.78705 1.56807 0.75103 0.88649 1.20118 1.22788 0.79163 0.79529 0.91594 0.92274 0.89779 0.90464 0.91889 0.90771 0.75722 0.92001 0.90762 0.91484 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.30 12.88 -148.98 -1.92 -1.62 16 2 C -0.09 0.14 2.45 71.24 0.17 0.31 16 3 Si 0.81 -5.29 29.91 68.60 2.05 -3.24 16 4 C -0.15 0.22 5.26 -19.83 -0.10 0.12 16 5 C -0.05 0.38 8.66 22.28 0.19 0.57 16 6 C -0.13 0.78 10.02 22.31 0.22 1.00 16 7 C 0.10 0.17 7.31 22.44 0.16 0.33 16 8 F -0.13 -0.61 17.11 44.97 0.77 0.16 16 9 C 0.01 0.06 5.74 22.55 0.13 0.19 16 10 O -0.34 -2.66 9.32 -93.69 -0.87 -3.53 16 11 C 0.07 0.20 5.44 71.98 0.39 0.59 16 12 C -0.08 -0.13 2.43 -10.80 -0.03 -0.16 16 13 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 14 C -0.10 0.13 5.20 30.59 0.16 0.29 16 15 C -0.11 -0.14 5.57 30.59 0.17 0.03 16 16 C 0.10 0.16 3.47 30.59 0.11 0.27 16 17 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 18 O -0.59 -2.21 13.32 -148.98 -1.98 -4.20 16 19 C -0.15 -0.21 5.54 30.58 0.17 -0.04 16 20 C -0.11 -0.27 5.10 30.58 0.16 -0.11 16 21 C 0.11 0.54 7.25 22.44 0.16 0.70 16 22 F -0.13 -1.31 16.60 44.97 0.75 -0.56 16 23 H 0.40 -4.18 8.70 -74.06 -0.64 -4.82 16 24 H 0.10 0.22 7.91 -2.39 -0.02 0.20 16 25 H -0.27 0.69 7.11 99.48 0.71 1.40 16 26 H -0.30 -0.59 7.11 99.48 0.71 0.11 16 27 H 0.19 -3.07 5.12 -2.91 -0.01 -3.08 16 28 H 0.19 -2.33 8.06 -2.91 -0.02 -2.35 16 29 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 30 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 32 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.39 -1.57 9.08 -74.06 -0.67 -2.25 16 36 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.06 0.34 7.82 -2.39 -0.02 0.32 16 Total: 0.00 -19.60 329.04 0.67 -18.93 By element: Atomic # 1 Polarization: -9.84 SS G_CDS: -0.19 Total: -10.03 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 2.07 Total: 4.09 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -4.78 Total: -9.35 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 1.52 Total: -0.40 kcal Atomic # 14 Polarization: -5.29 SS G_CDS: 2.05 Total: -3.24 kcal Total: -19.60 0.67 -18.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14032924_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.450 kcal (2) G-P(sol) polarization free energy of solvation -19.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds