Wall clock time and date at job start Mon Mar 8 2021 07:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.36007 * 117.00398 * 179.97438 * 10 9 8 12 12 C 1.38813 * 120.07082 * 269.73017 * 11 10 9 13 13 F 1.35096 * 120.03208 * 0.02562 * 12 11 10 14 14 C 1.38395 * 119.92985 * 179.79183 * 12 11 10 15 15 C 1.38230 * 120.06920 * 0.45631 * 14 12 11 16 16 C 1.38281 * 120.13858 * 359.79547 * 15 14 12 17 17 C 1.50699 * 119.96517 * 180.02562 * 16 15 14 18 18 O 1.42896 * 109.47571 * 104.97284 * 17 16 15 19 19 Si 1.86303 * 109.47051 * 344.96948 * 17 16 15 20 20 H 1.48507 * 109.46827 * 60.00430 * 19 17 16 21 21 H 1.48505 * 109.47267 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47473 * 300.00426 * 19 17 16 23 23 C 1.38350 * 120.07063 * 359.97248 * 16 15 14 24 24 F 1.35097 * 120.03600 * 180.02562 * 23 16 15 25 25 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 26 26 C 1.38234 * 120.00005 * 0.52168 * 25 8 7 27 27 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 28 28 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 29 29 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 32 32 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 33 33 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 34 34 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 35 35 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 36 36 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 37 37 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 39 39 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 40 40 H 1.07999 * 119.96457 * 180.20349 * 14 12 11 41 41 H 1.07998 * 119.93583 * 179.76800 * 15 14 12 42 42 H 1.09003 * 109.47101 * 224.97341 * 17 16 15 43 43 H 0.96701 * 114.00198 * 179.97438 * 18 17 16 44 44 H 1.07999 * 119.99927 * 180.24100 * 25 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9379 -3.5037 6.0763 12 6 6.2533 -2.7725 7.2133 13 9 5.9522 -1.4570 7.2763 14 6 6.8721 -3.3936 8.2841 15 6 7.1846 -4.7385 8.2186 16 6 6.8764 -5.4685 7.0854 17 6 7.2184 -6.9346 7.0184 18 8 6.0288 -7.7093 7.1825 19 14 8.4245 -7.3536 8.3751 20 1 7.8126 -7.0478 9.6932 21 1 8.7610 -8.7985 8.3095 22 1 9.6607 -6.5487 8.2045 23 6 6.2535 -4.8545 6.0134 24 9 5.9523 -5.5685 4.9068 25 6 3.1758 -0.8216 3.8171 26 6 2.7155 -0.1698 2.6883 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8899 32 1 2.1206 2.2703 0.8901 33 1 2.1206 -1.9058 -1.5212 34 1 2.1206 -0.3643 -2.4112 35 1 3.5740 -0.8778 -1.5214 36 1 2.5356 -2.7987 0.5825 37 1 3.3559 -3.9596 2.5930 38 1 3.5293 -2.3833 5.9053 39 1 3.5332 -3.9242 5.0141 40 1 7.1148 -2.8259 9.1703 41 1 7.6709 -5.2201 9.0541 42 1 7.6675 -7.1591 6.0509 43 1 6.1740 -8.6647 7.1498 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_14032924_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:45 Heat of formation + Delta-G solvation = -149.097066 kcal Electronic energy + Delta-G solvation = -28164.880771 eV Core-core repulsion = 23907.157201 eV Total energy + Delta-G solvation = -4257.723570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.04535 -49.99296 -40.91642 -40.05386 -38.87801 -37.47226 -33.23968 -32.29831 -31.82944 -31.03971 -29.54680 -28.41997 -28.39474 -27.10607 -26.84347 -24.17894 -23.42801 -22.87160 -22.07509 -19.47610 -18.95499 -18.70783 -18.62342 -17.90440 -17.01866 -16.89343 -16.45120 -16.37321 -16.29914 -16.12004 -15.99467 -15.56602 -15.21750 -14.95022 -14.75719 -14.30922 -14.21439 -14.13710 -14.04536 -13.94435 -13.84242 -13.66426 -13.49247 -13.30085 -13.23723 -13.19198 -13.08114 -13.01858 -12.55539 -12.40502 -12.22786 -11.98106 -11.89869 -11.11304 -11.03180 -10.88293 -10.79618 -10.50676 -10.05395 -9.88138 -9.72343 -9.55522 -0.44235 -0.28230 0.28115 0.60383 0.94547 1.29802 1.36165 1.73082 1.74515 1.84529 1.87289 2.01005 2.41142 2.56747 2.69000 3.08095 3.10831 3.25042 3.51067 3.56827 3.82547 3.85173 3.87141 4.06199 4.14907 4.28545 4.30311 4.45748 4.56425 4.57498 4.62957 4.70703 4.72385 4.73580 4.74295 4.77402 4.77873 4.78557 4.81003 4.88709 5.05857 5.21151 5.31194 5.43729 5.49350 5.52968 5.55563 5.66527 5.69147 6.16304 6.22569 6.43197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.361 4.361 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.086 4.086 9 C 0.103 3.897 10 O -0.310 6.310 11 C 0.027 3.973 12 C 0.119 3.881 13 F -0.119 7.119 14 C -0.145 4.145 15 C -0.070 4.070 16 C -0.111 4.111 17 C -0.084 4.084 18 O -0.542 6.542 19 Si 0.950 3.050 20 H -0.244 1.244 21 H -0.250 1.250 22 H -0.244 1.244 23 C 0.141 3.859 24 F -0.114 7.114 25 C -0.105 4.105 26 C -0.092 4.092 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.081 0.919 43 H 0.384 0.616 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 -1.585 1.254 2.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.403 4.403 6 C -0.110 4.110 7 C -0.123 4.123 8 C -0.087 4.087 9 C 0.030 3.970 10 O -0.227 6.227 11 C -0.019 4.019 12 C 0.099 3.901 13 F -0.097 7.097 14 C -0.164 4.164 15 C -0.088 4.088 16 C -0.112 4.112 17 C -0.194 4.194 18 O -0.348 6.348 19 Si 0.771 3.229 20 H -0.167 1.167 21 H -0.174 1.174 22 H -0.167 1.167 23 C 0.121 3.879 24 F -0.092 7.092 25 C -0.123 4.123 26 C -0.110 4.110 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.172 0.828 41 H 0.165 0.835 42 H 0.099 0.901 43 H 0.232 0.768 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.967 -1.111 1.809 2.333 hybrid contribution -0.228 -0.489 -0.303 0.619 sum 0.739 -1.600 1.506 2.318 Atomic orbital electron populations 1.26119 1.20430 1.04581 1.04490 0.78183 0.66846 0.66132 0.63707 1.26134 1.06509 1.18541 1.04550 1.26134 1.06507 1.08048 1.15042 1.27481 1.03112 0.99511 1.10185 1.21072 0.97585 0.94670 0.97694 1.21161 0.98614 0.99976 0.92518 1.19429 1.00756 0.94154 0.94311 1.21736 0.78525 1.00191 0.96588 1.86271 1.20111 1.76009 1.40281 1.18575 1.03455 0.90123 0.89769 1.17793 0.99715 0.78961 0.93620 1.91561 1.90780 1.30967 1.96424 1.21124 1.01119 0.95331 0.98801 1.20888 0.97900 0.93399 0.96605 1.19337 1.02631 0.95463 0.93760 1.24697 0.95577 0.89329 1.09760 1.86507 1.30466 1.21683 1.96183 0.85695 0.77523 0.81577 0.78093 1.16710 1.17354 1.16679 1.17504 0.98496 0.87634 0.84267 1.91547 1.90494 1.77318 1.49829 1.21157 0.98653 0.93520 0.98966 1.21072 0.97597 0.99727 0.92635 0.91169 0.91023 0.91164 0.91029 0.90954 0.91164 0.91162 0.90955 0.91028 0.85888 0.86088 0.91511 0.91451 0.82769 0.83514 0.90111 0.76792 0.86095 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.48 8.65 101.05 0.87 1.36 16 2 Si 1.06 -2.00 12.32 -169.99 -2.09 -4.09 16 3 C -0.45 0.54 8.53 101.05 0.86 1.40 16 4 C -0.45 0.54 8.53 101.05 0.86 1.40 16 5 C -0.36 -0.28 4.59 -39.58 -0.18 -0.46 16 6 C -0.09 -0.13 9.29 -39.58 -0.37 -0.50 16 7 C -0.10 -0.26 9.70 -39.58 -0.38 -0.65 16 8 C -0.09 -0.26 5.51 -104.63 -0.58 -0.84 16 9 C 0.10 0.28 6.18 36.00 0.22 0.50 16 10 O -0.31 -1.40 9.77 -19.76 -0.19 -1.59 16 11 C 0.03 0.09 5.74 -39.14 -0.22 -0.13 16 12 C 0.12 0.25 7.31 -39.31 -0.29 -0.03 16 13 F -0.12 -0.37 17.11 2.25 0.04 -0.33 16 14 C -0.14 0.04 10.02 -39.53 -0.40 -0.36 16 15 C -0.07 0.03 8.66 -39.57 -0.34 -0.32 16 16 C -0.11 -0.13 5.30 -104.57 -0.55 -0.68 16 17 C -0.08 0.05 2.44 36.01 0.09 0.14 16 18 O -0.54 0.06 12.86 -35.23 -0.45 -0.39 16 19 Si 0.95 -1.85 25.49 -169.99 -4.33 -6.18 16 20 H -0.24 0.36 6.73 56.52 0.38 0.74 16 21 H -0.25 0.42 7.11 56.52 0.40 0.82 16 22 H -0.24 0.35 7.11 56.52 0.40 0.75 16 23 C 0.14 0.42 7.25 -39.31 -0.29 0.13 16 24 F -0.11 -0.46 16.59 2.25 0.04 -0.42 16 25 C -0.10 -0.26 9.70 -39.58 -0.38 -0.64 16 26 C -0.09 -0.13 9.29 -39.58 -0.37 -0.50 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.10 7.69 -51.93 -0.40 -0.50 16 33 H 0.07 -0.10 7.69 -51.93 -0.40 -0.50 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 36 H 0.12 -0.08 7.43 -52.49 -0.39 -0.47 16 37 H 0.12 0.17 8.06 -52.49 -0.42 -0.25 16 38 H 0.07 0.11 8.09 -51.93 -0.42 -0.31 16 39 H 0.07 0.13 8.09 -51.93 -0.42 -0.29 16 40 H 0.15 -0.43 8.06 -52.49 -0.42 -0.85 16 41 H 0.15 -0.37 4.88 -52.49 -0.26 -0.62 16 42 H 0.08 -0.13 7.90 -51.93 -0.41 -0.54 16 43 H 0.38 -1.77 8.74 45.56 0.40 -1.37 16 44 H 0.12 0.15 8.06 -52.49 -0.42 -0.27 16 45 H 0.12 -0.08 7.43 -52.49 -0.39 -0.47 16 LS Contribution 389.62 15.07 5.87 5.87 Total: 0.00 -6.63 389.62 -8.23 -14.86 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -5.67 Total: -7.55 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.44 Total: -0.17 kcal Atomic # 8 Polarization: -1.34 SS G_CDS: -0.65 Total: -1.98 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.08 Total: -0.75 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: -6.43 Total: -10.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -6.63 -8.23 -14.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14032924_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.235 kcal (2) G-P(sol) polarization free energy of solvation -6.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds