Wall clock time and date at job start Mon Mar 8 2021 07:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.36007 * 117.00398 * 179.97438 * 10 9 8 12 12 C 1.38813 * 120.07082 * 269.73017 * 11 10 9 13 13 F 1.35096 * 120.03208 * 0.02562 * 12 11 10 14 14 C 1.38395 * 119.92985 * 179.79183 * 12 11 10 15 15 C 1.38230 * 120.06920 * 0.45631 * 14 12 11 16 16 C 1.38281 * 120.13858 * 359.79547 * 15 14 12 17 17 C 1.50699 * 119.96517 * 180.02562 * 16 15 14 18 18 O 1.42896 * 109.47571 * 104.97284 * 17 16 15 19 19 Si 1.86303 * 109.47051 * 344.96948 * 17 16 15 20 20 H 1.48507 * 109.46827 * 60.00430 * 19 17 16 21 21 H 1.48505 * 109.47267 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47473 * 300.00426 * 19 17 16 23 23 C 1.38350 * 120.07063 * 359.97248 * 16 15 14 24 24 F 1.35097 * 120.03600 * 180.02562 * 23 16 15 25 25 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 26 26 C 1.38234 * 120.00005 * 0.52168 * 25 8 7 27 27 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 28 28 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 29 29 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 32 32 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 33 33 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 34 34 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 35 35 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 36 36 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 37 37 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 39 39 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 40 40 H 1.07999 * 119.96457 * 180.20349 * 14 12 11 41 41 H 1.07998 * 119.93583 * 179.76800 * 15 14 12 42 42 H 1.09003 * 109.47101 * 224.97341 * 17 16 15 43 43 H 0.96701 * 114.00198 * 179.97438 * 18 17 16 44 44 H 1.07999 * 119.99927 * 180.24100 * 25 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9379 -3.5037 6.0763 12 6 6.2533 -2.7725 7.2133 13 9 5.9522 -1.4570 7.2763 14 6 6.8721 -3.3936 8.2841 15 6 7.1846 -4.7385 8.2186 16 6 6.8764 -5.4685 7.0854 17 6 7.2184 -6.9346 7.0184 18 8 6.0288 -7.7093 7.1825 19 14 8.4245 -7.3536 8.3751 20 1 7.8126 -7.0478 9.6932 21 1 8.7610 -8.7985 8.3095 22 1 9.6607 -6.5487 8.2045 23 6 6.2535 -4.8545 6.0134 24 9 5.9523 -5.5685 4.9068 25 6 3.1758 -0.8216 3.8171 26 6 2.7155 -0.1698 2.6883 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8899 32 1 2.1206 2.2703 0.8901 33 1 2.1206 -1.9058 -1.5212 34 1 2.1206 -0.3643 -2.4112 35 1 3.5740 -0.8778 -1.5214 36 1 2.5356 -2.7987 0.5825 37 1 3.3559 -3.9596 2.5930 38 1 3.5293 -2.3833 5.9053 39 1 3.5332 -3.9242 5.0141 40 1 7.1148 -2.8259 9.1703 41 1 7.6709 -5.2201 9.0541 42 1 7.6675 -7.1591 6.0509 43 1 6.1740 -8.6647 7.1498 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_14032924_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:44 Heat of formation + Delta-G solvation = -140.313729 kcal Electronic energy + Delta-G solvation = -28164.499897 eV Core-core repulsion = 23907.157201 eV Total energy + Delta-G solvation = -4257.342696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.23295 -50.19700 -41.05740 -40.14351 -38.99282 -37.45074 -33.35413 -32.34547 -31.93780 -31.14556 -29.44196 -28.30634 -28.27849 -27.25688 -26.85404 -24.27272 -23.54057 -22.93915 -22.20876 -19.63115 -19.08014 -18.79881 -18.63519 -18.03373 -17.15877 -17.02884 -16.55801 -16.46506 -16.44063 -16.21347 -16.00396 -15.63436 -15.34846 -15.10526 -14.69526 -14.38560 -14.18790 -14.08079 -14.01692 -13.91328 -13.82169 -13.71419 -13.53214 -13.30447 -13.13972 -13.11995 -13.06405 -12.97742 -12.59627 -12.42253 -12.08164 -12.03386 -11.80251 -11.30304 -10.95799 -10.81848 -10.76996 -10.41196 -10.16053 -9.97509 -9.86196 -9.66770 -0.54316 -0.37247 0.16596 0.46631 1.08136 1.47839 1.54897 1.79385 1.82490 1.89500 2.01367 2.07375 2.31901 2.55363 2.65191 2.97072 3.11250 3.19935 3.48752 3.60248 3.69512 3.73709 3.89752 3.95293 4.09142 4.15612 4.19722 4.40870 4.47925 4.51308 4.63379 4.65294 4.68715 4.83958 4.84068 4.84319 4.87752 4.88510 4.88863 4.90085 4.93969 5.10698 5.26906 5.34470 5.51895 5.54776 5.58299 5.67243 5.69268 6.03177 6.07504 6.72537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.373 4.373 6 C -0.102 4.102 7 C -0.122 4.122 8 C -0.105 4.105 9 C 0.105 3.895 10 O -0.330 6.330 11 C 0.010 3.990 12 C 0.103 3.897 13 F -0.128 7.128 14 C -0.129 4.129 15 C -0.067 4.067 16 C -0.114 4.114 17 C -0.097 4.097 18 O -0.562 6.562 19 Si 0.992 3.008 20 H -0.244 1.244 21 H -0.253 1.253 22 H -0.248 1.248 23 C 0.117 3.883 24 F -0.128 7.128 25 C -0.121 4.121 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.185 0.815 41 H 0.174 0.826 42 H 0.084 0.916 43 H 0.401 0.599 44 H 0.126 0.874 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -1.529 1.846 2.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.315 2.685 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.120 4.120 7 C -0.141 4.141 8 C -0.105 4.105 9 C 0.032 3.968 10 O -0.248 6.248 11 C -0.036 4.036 12 C 0.083 3.917 13 F -0.107 7.107 14 C -0.148 4.148 15 C -0.084 4.084 16 C -0.115 4.115 17 C -0.205 4.205 18 O -0.372 6.372 19 Si 0.812 3.188 20 H -0.168 1.168 21 H -0.177 1.177 22 H -0.172 1.172 23 C 0.097 3.903 24 F -0.106 7.106 25 C -0.139 4.139 26 C -0.119 4.119 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.203 0.797 41 H 0.191 0.809 42 H 0.102 0.898 43 H 0.252 0.748 44 H 0.144 0.856 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.320 -1.079 2.406 2.949 hybrid contribution -0.344 -0.537 -0.495 0.807 sum 0.976 -1.616 1.911 2.686 Atomic orbital electron populations 1.26255 1.21254 1.04526 1.04692 0.77175 0.65370 0.64609 0.61334 1.26271 1.06341 1.19318 1.04986 1.26279 1.06335 1.08519 1.15827 1.28187 1.02174 0.99488 1.11320 1.21399 0.97247 0.95321 0.97990 1.21354 0.99328 1.00322 0.93050 1.19584 1.01536 0.94695 0.94647 1.21751 0.77997 1.00190 0.96884 1.86223 1.20907 1.76370 1.41263 1.18825 1.04047 0.90605 0.90125 1.17996 1.00871 0.78694 0.94156 1.91531 1.91060 1.31597 1.96495 1.21478 0.99083 0.95471 0.98724 1.21231 0.97247 0.93296 0.96673 1.19717 1.01644 0.96691 0.93458 1.25007 0.95870 0.88286 1.11330 1.86455 1.31135 1.23301 1.96269 0.85097 0.76058 0.81044 0.76582 1.16818 1.17655 1.17189 1.17753 1.00076 0.87707 0.84737 1.91498 1.90885 1.77573 1.50668 1.21366 0.99206 0.93519 0.99824 1.21413 0.97196 1.00851 0.92471 0.91335 0.90467 0.91377 0.91443 0.90451 0.90850 0.90912 0.90446 0.91456 0.84031 0.85962 0.91059 0.91584 0.79737 0.80919 0.89772 0.74769 0.85640 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.26 8.65 113.37 0.98 2.24 16 2 Si 1.13 -4.82 12.32 68.60 0.85 -3.97 16 3 C -0.46 1.40 8.53 113.37 0.97 2.37 16 4 C -0.46 1.34 8.53 113.37 0.97 2.31 16 5 C -0.37 -0.72 4.59 22.27 0.10 -0.62 16 6 C -0.10 -0.39 9.29 22.27 0.21 -0.18 16 7 C -0.12 -0.87 9.70 22.27 0.22 -0.65 16 8 C -0.10 -0.87 5.51 -19.87 -0.11 -0.98 16 9 C 0.11 0.85 6.18 71.23 0.44 1.30 16 10 O -0.33 -3.92 9.77 -93.63 -0.91 -4.84 16 11 C 0.01 0.09 5.74 22.56 0.13 0.22 16 12 C 0.10 0.55 7.31 22.44 0.16 0.71 16 13 F -0.13 -0.96 17.11 44.97 0.77 -0.19 16 14 C -0.13 0.15 10.02 22.31 0.22 0.37 16 15 C -0.07 0.10 8.66 22.28 0.19 0.30 16 16 C -0.11 -0.32 5.30 -19.83 -0.11 -0.42 16 17 C -0.10 0.11 2.44 71.24 0.17 0.28 16 18 O -0.56 -0.06 12.86 -148.98 -1.92 -1.97 16 19 Si 0.99 -5.09 25.49 68.60 1.75 -3.34 16 20 H -0.24 1.22 6.73 99.48 0.67 1.89 16 21 H -0.25 1.18 7.11 99.48 0.71 1.88 16 22 H -0.25 1.08 7.11 99.48 0.71 1.79 16 23 C 0.12 0.92 7.25 22.45 0.16 1.09 16 24 F -0.13 -1.37 16.59 44.97 0.75 -0.63 16 25 C -0.12 -0.80 9.70 22.27 0.22 -0.59 16 26 C -0.10 -0.36 9.29 22.27 0.21 -0.15 16 27 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 28 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 30 H 0.07 -0.13 7.96 -2.39 -0.02 -0.14 16 31 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.26 7.69 -2.38 -0.02 -0.28 16 33 H 0.07 -0.24 7.69 -2.39 -0.02 -0.26 16 34 H 0.08 -0.28 7.96 -2.38 -0.02 -0.30 16 35 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H 0.14 -0.13 7.43 -2.91 -0.02 -0.15 16 37 H 0.12 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 39 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 40 H 0.19 -1.41 8.06 -2.91 -0.02 -1.44 16 41 H 0.17 -1.22 4.88 -2.91 -0.01 -1.24 16 42 H 0.08 -0.21 7.90 -2.39 -0.02 -0.23 16 43 H 0.40 -3.66 8.74 -74.06 -0.65 -4.31 16 44 H 0.13 0.56 8.06 -2.91 -0.02 0.54 16 45 H 0.14 -0.20 7.43 -2.91 -0.02 -0.22 16 Total: 0.00 -16.88 389.62 7.50 -9.38 By element: Atomic # 1 Polarization: -3.10 SS G_CDS: 1.08 Total: -2.02 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.14 Total: 7.58 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -2.83 Total: -6.81 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 1.52 Total: -0.81 kcal Atomic # 14 Polarization: -9.91 SS G_CDS: 2.59 Total: -7.32 kcal Total: -16.88 7.50 -9.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14032924_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.932 kcal (2) G-P(sol) polarization free energy of solvation -16.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds