Wall clock time and date at job start Mon Mar 8 2021 09:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86294 * 109.47190 * 2 1 4 4 C 1.50698 * 109.47022 * 120.00043 * 2 1 3 5 5 C 1.38691 * 119.99021 * 74.99519 * 4 2 1 6 6 O 1.35942 * 120.02244 * 0.02562 * 5 4 2 7 7 C 1.42903 * 117.00055 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47094 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46870 * 305.00019 * 8 7 6 10 10 C 1.53002 * 109.47346 * 64.99836 * 8 7 6 11 11 C 1.52996 * 109.46972 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47165 * 300.00293 * 11 10 8 13 13 H 1.09000 * 109.47140 * 299.99954 * 12 11 10 14 14 O 1.42905 * 109.47266 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47592 * 60.00300 * 12 11 10 16 16 C 1.52997 * 109.46975 * 185.00241 * 8 7 6 17 17 C 1.38717 * 119.95546 * 180.27594 * 5 4 2 18 18 C 1.38315 * 119.94538 * 359.51532 * 17 5 4 19 19 F 1.35103 * 120.00609 * 180.23439 * 18 17 5 20 20 C 1.38695 * 119.98494 * 0.48651 * 18 17 5 21 21 F 1.35103 * 119.97383 * 179.72155 * 20 18 17 22 22 C 1.38209 * 119.99624 * 255.02258 * 4 2 1 23 23 H 0.96697 * 114.00601 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47090 * 239.99926 * 2 1 3 25 25 H 1.48501 * 110.00120 * 58.68532 * 3 2 1 26 26 H 1.48505 * 109.99865 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.46563 * 60.00029 * 7 6 5 28 28 H 1.09001 * 109.46828 * 300.00234 * 7 6 5 29 29 H 1.08992 * 109.46974 * 300.00318 * 10 8 7 30 30 H 1.08996 * 109.46550 * 60.00424 * 10 8 7 31 31 H 1.09000 * 109.47054 * 60.00300 * 11 10 8 32 32 H 1.09001 * 109.46997 * 180.02562 * 11 10 8 33 33 H 0.96705 * 113.99792 * 59.99753 * 14 12 11 34 34 H 1.08993 * 109.47839 * 180.02562 * 15 12 11 35 35 H 1.09000 * 109.47160 * 59.99666 * 15 12 11 36 36 H 1.09001 * 109.46922 * 59.99912 * 16 8 7 37 37 H 1.09000 * 109.47140 * 299.99612 * 16 8 7 38 38 H 1.07997 * 120.02374 * 179.75584 * 17 5 4 39 39 H 1.07999 * 119.97077 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8692 -2.0939 1.3061 6 8 1.3558 -2.8093 0.2705 7 6 1.3233 -4.2305 0.4168 8 6 0.7176 -4.8588 -0.8399 9 1 -0.2614 -4.4189 -1.0302 10 6 1.6360 -4.5958 -2.0350 11 6 1.0305 -5.2247 -3.2915 12 6 0.8810 -6.7333 -3.0854 13 1 1.8601 -7.1728 -2.8948 14 8 0.3160 -7.3208 -4.2592 15 6 -0.0374 -6.9963 -1.8903 16 6 0.5676 -6.3674 -0.6341 17 6 2.3265 -2.7467 2.4414 18 6 2.8530 -2.0175 3.4922 19 9 3.3031 -2.6524 4.5966 20 6 2.9140 -0.6341 3.4141 21 9 3.4232 0.0783 4.4429 22 6 2.4533 0.0168 2.2835 23 1 -0.3934 -0.8833 -0.0004 24 1 1.7924 -0.5138 -0.8900 25 1 1.5356 2.4770 1.1922 26 1 3.5350 1.7700 0.0006 27 1 0.7163 -4.4926 1.2833 28 1 2.3375 -4.6045 0.5569 29 1 1.7428 -3.5211 -2.1815 30 1 2.6149 -5.0357 -1.8446 31 1 0.0514 -4.7852 -3.4821 32 1 1.6850 -5.0377 -4.1429 33 1 0.8468 -7.1931 -5.0574 34 1 -0.1436 -8.0711 -1.7431 35 1 -1.0165 -6.5569 -2.0809 36 1 -0.0867 -6.5547 0.2173 37 1 1.5466 -6.8073 -0.4438 38 1 2.2750 -3.8237 2.5031 39 1 2.5013 1.0941 2.2238 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_14425796_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:23:00 Heat of formation + Delta-G solvation = -197.063793 kcal Electronic energy + Delta-G solvation = -25052.546935 eV Core-core repulsion = 20983.408704 eV Total energy + Delta-G solvation = -4069.138231 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.56580 -49.62376 -41.81202 -40.29114 -38.78001 -37.43755 -36.78390 -32.83824 -32.27542 -32.01124 -30.70686 -27.10658 -26.80539 -24.31353 -23.96845 -23.05147 -22.32369 -21.07569 -19.88870 -19.01767 -18.65451 -18.29559 -18.02615 -17.64379 -17.29768 -17.13433 -16.64833 -16.05808 -16.00083 -15.82216 -15.77279 -15.63237 -15.30379 -14.97001 -14.87637 -14.42249 -14.17216 -13.97013 -13.65242 -13.40428 -13.35239 -13.16984 -12.95521 -12.62773 -12.30638 -12.20510 -12.04887 -11.86199 -11.76758 -11.44378 -11.27299 -11.14306 -10.84202 -10.36629 -9.43082 -4.89801 -0.44431 -0.27097 1.27762 1.58361 1.68054 1.88064 1.98675 2.56306 3.00869 3.04575 3.16711 3.32451 3.39584 3.48426 3.54300 3.63102 3.78975 3.85028 3.90359 3.92205 4.09871 4.13752 4.15086 4.23934 4.28829 4.29289 4.33875 4.39648 4.42255 4.59593 4.62803 4.76485 4.79580 4.86897 4.90335 4.98253 4.98944 5.12972 5.23908 5.30530 5.89805 6.49558 6.61699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.071 4.071 3 Si 0.745 3.255 4 C -0.127 4.127 5 C 0.167 3.833 6 O -0.300 6.300 7 C 0.057 3.943 8 C -0.087 4.087 9 H 0.088 0.912 10 C -0.112 4.112 11 C -0.152 4.152 12 C 0.102 3.898 13 H 0.054 0.946 14 O -0.569 6.569 15 C -0.111 4.111 16 C -0.111 4.111 17 C -0.216 4.216 18 C 0.117 3.883 19 F -0.120 7.120 20 C 0.039 3.961 21 F -0.124 7.124 22 C -0.089 4.089 23 H 0.368 0.632 24 H 0.082 0.918 25 H -0.250 1.250 26 H -0.246 1.246 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.380 0.620 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.156 0.844 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -1.546 -4.270 4.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.180 4.180 3 Si 0.643 3.357 4 C -0.128 4.128 5 C 0.120 3.880 6 O -0.213 6.213 7 C -0.018 4.018 8 C -0.105 4.105 9 H 0.106 0.894 10 C -0.149 4.149 11 C -0.190 4.190 12 C 0.044 3.956 13 H 0.072 0.928 14 O -0.375 6.375 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.236 4.236 18 C 0.096 3.904 19 F -0.098 7.098 20 C 0.019 3.981 21 F -0.103 7.103 22 C -0.107 4.107 23 H 0.215 0.785 24 H 0.100 0.900 25 H -0.175 1.175 26 H -0.170 1.170 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.227 0.773 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.173 0.827 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.248 -0.436 -3.521 3.556 hybrid contribution 0.749 -1.696 1.001 2.107 sum 0.997 -2.132 -2.519 3.448 Atomic orbital electron populations 1.86743 1.16536 1.33367 1.97011 1.25166 0.85068 1.13370 0.94393 0.92884 0.78681 0.76283 0.87821 1.19602 1.04309 0.90659 0.98235 1.18398 0.92777 0.90300 0.86533 1.86079 1.76841 1.20423 1.37968 1.23100 1.01723 0.77215 0.99721 1.21244 1.00625 0.95527 0.93124 0.89358 1.21525 0.98324 1.01658 0.93433 1.22276 1.02239 0.96234 0.98243 1.21842 0.96116 0.91749 0.85923 0.92761 1.86524 1.52711 1.79307 1.18911 1.21427 0.99321 1.01726 0.92425 1.21474 1.02018 0.93214 0.98111 1.21138 1.06996 1.01812 0.93618 1.17340 0.99444 0.88614 0.84970 1.91581 1.86385 1.81698 1.50114 1.17405 1.04986 0.87870 0.87859 1.91565 1.84831 1.77616 1.56255 1.20795 0.97916 1.00842 0.91193 0.78464 0.90006 1.17463 1.17026 0.91142 0.91287 0.90668 0.91735 0.90808 0.91421 0.77314 0.90740 0.90835 0.90661 0.91225 0.82694 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.24 12.65 -35.23 -0.45 -0.69 16 2 C -0.07 0.02 2.33 36.00 0.08 0.11 16 3 Si 0.75 -0.64 30.40 -169.99 -5.17 -5.81 16 4 C -0.13 -0.10 5.28 -104.47 -0.55 -0.66 16 5 C 0.17 0.00 6.62 -39.24 -0.26 -0.26 16 6 O -0.30 0.43 8.57 -19.56 -0.17 0.26 16 7 C 0.06 -0.18 4.12 37.16 0.15 -0.03 16 8 C -0.09 0.28 2.43 -90.62 -0.22 0.06 16 9 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 10 C -0.11 0.31 5.10 -26.73 -0.14 0.18 16 11 C -0.15 0.35 5.54 -26.73 -0.15 0.20 16 12 C 0.10 -0.15 3.47 -26.73 -0.09 -0.24 16 13 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 14 O -0.57 -0.08 13.32 -35.23 -0.47 -0.55 16 15 C -0.11 0.18 5.57 -26.76 -0.15 0.03 16 16 C -0.11 0.37 5.20 -26.76 -0.14 0.23 16 17 C -0.22 -0.01 9.01 -39.38 -0.35 -0.36 16 18 C 0.12 0.25 7.30 -39.38 -0.29 -0.04 16 19 F -0.12 -0.39 17.18 2.25 0.04 -0.35 16 20 C 0.04 0.11 7.30 -39.37 -0.29 -0.18 16 21 F -0.12 -0.53 17.18 2.25 0.04 -0.49 16 22 C -0.09 -0.16 8.63 -39.55 -0.34 -0.50 16 23 H 0.37 -0.58 8.60 45.56 0.39 -0.19 16 24 H 0.08 -0.12 7.82 -51.93 -0.41 -0.53 16 25 H -0.25 -0.39 6.81 56.52 0.38 -0.01 16 26 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 27 H 0.07 -0.27 7.65 -51.93 -0.40 -0.67 16 28 H 0.07 -0.26 7.67 -51.93 -0.40 -0.65 16 29 H 0.07 -0.17 7.82 -51.93 -0.41 -0.57 16 30 H 0.06 -0.18 8.14 -51.93 -0.42 -0.61 16 31 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.38 -1.37 9.08 45.56 0.41 -0.96 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 35 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 36 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 37 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 38 H 0.16 -0.34 6.30 -52.49 -0.33 -0.67 16 39 H 0.15 0.18 4.93 -52.49 -0.26 -0.08 16 LS Contribution 324.28 15.07 4.89 4.89 Total: 0.00 -5.13 324.28 -8.43 -13.56 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: -4.41 Total: -9.37 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.73 Total: -1.46 kcal Atomic # 8 Polarization: 0.11 SS G_CDS: -1.08 Total: -0.98 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.08 Total: -0.84 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -5.17 Total: -5.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -5.13 -8.43 -13.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14425796_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.501 kcal (2) G-P(sol) polarization free energy of solvation -5.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds