Wall clock time and date at job start Mon Mar 8 2021 07:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38123 * 120.03150 * 2 1 4 4 C 1.38281 * 120.05920 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.94622 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47279 * 299.99759 * 5 4 3 7 7 Si 1.86297 * 109.47223 * 180.02562 * 5 4 3 8 8 H 1.48504 * 109.47312 * 59.99904 * 7 5 4 9 9 H 1.48499 * 109.47213 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47226 * 299.99928 * 7 5 4 11 11 C 1.38249 * 120.10916 * 359.74561 * 4 3 2 12 12 C 1.38161 * 120.05756 * 0.50906 * 11 4 3 13 13 C 1.38714 * 119.94312 * 359.48931 * 12 11 4 14 14 O 1.35892 * 120.05889 * 180.27992 * 13 12 11 15 15 C 1.42901 * 116.99992 * 359.97438 * 14 13 12 16 16 C 1.53001 * 109.47234 * 180.02562 * 15 14 13 17 17 C 1.53008 * 109.47121 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47095 * 180.02562 * 17 16 15 19 19 Si 1.63095 * 113.99941 * 180.02562 * 18 17 16 20 20 C 1.86309 * 109.47069 * 300.00126 * 19 18 17 21 21 C 1.86301 * 109.47289 * 59.99752 * 19 18 17 22 22 C 1.86299 * 109.47377 * 180.02562 * 19 18 17 23 23 C 1.53001 * 109.46838 * 59.99768 * 22 19 18 24 24 C 1.52996 * 109.47417 * 179.97438 * 22 19 18 25 25 C 1.53006 * 109.46777 * 300.00014 * 22 19 18 26 26 H 1.09000 * 109.47146 * 270.02559 * 1 2 3 27 27 H 1.09006 * 109.47104 * 30.02403 * 1 2 3 28 28 H 1.09004 * 109.47561 * 150.02653 * 1 2 3 29 29 H 1.08006 * 119.96983 * 359.94984 * 3 2 1 30 30 H 1.08997 * 109.47338 * 59.99925 * 5 4 3 31 31 H 0.96692 * 114.00336 * 300.00216 * 6 5 4 32 32 H 1.08004 * 119.97354 * 180.25064 * 11 4 3 33 33 H 1.08002 * 120.03267 * 179.77413 * 12 11 4 34 34 H 1.08998 * 109.47276 * 300.00247 * 15 14 13 35 35 H 1.08998 * 109.47191 * 60.00113 * 15 14 13 36 36 H 1.08995 * 109.47348 * 299.99785 * 16 15 14 37 37 H 1.09003 * 109.47153 * 60.00621 * 16 15 14 38 38 H 1.08995 * 109.46840 * 300.00103 * 17 16 15 39 39 H 1.09003 * 109.46594 * 60.00286 * 17 16 15 40 40 H 1.08993 * 109.46960 * 60.00064 * 20 19 18 41 41 H 1.08997 * 109.46844 * 180.02562 * 20 19 18 42 42 H 1.08997 * 109.46884 * 300.00003 * 20 19 18 43 43 H 1.09004 * 109.47272 * 60.00184 * 21 19 18 44 44 H 1.08997 * 109.47222 * 179.97438 * 21 19 18 45 45 H 1.08993 * 109.47478 * 300.00387 * 21 19 18 46 46 H 1.08996 * 109.47280 * 60.00297 * 23 22 19 47 47 H 1.09003 * 109.46757 * 180.02562 * 23 22 19 48 48 H 1.08996 * 109.47074 * 299.99817 * 23 22 19 49 49 H 1.08997 * 109.47192 * 59.99830 * 24 22 19 50 50 H 1.09003 * 109.47063 * 179.97438 * 24 22 19 51 51 H 1.08996 * 109.47008 * 299.99890 * 24 22 19 52 52 H 1.08996 * 109.47212 * 60.00129 * 25 22 19 53 53 H 1.09003 * 109.46758 * 179.97438 * 25 22 19 54 54 H 1.08997 * 109.47050 * 299.99692 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1958 0.0000 4 6 3.5810 1.1965 0.0005 5 6 4.3326 2.5026 -0.0001 6 8 3.9869 3.2507 -1.1675 7 14 6.1647 2.1648 0.0001 8 1 6.5247 1.3861 -1.2121 9 1 6.9054 3.4519 0.0002 10 1 6.5246 1.3872 1.2130 11 6 4.2751 0.0009 0.0064 12 6 3.5884 -1.1980 0.0011 13 6 2.2013 -1.2014 0.0006 14 8 1.5235 -2.3792 0.0011 15 6 2.3035 -3.5766 0.0016 16 6 1.3732 -4.7913 0.0015 17 6 2.2084 -6.0733 0.0014 18 8 1.3395 -7.2078 0.0007 19 14 2.1190 -8.6404 0.0012 20 6 3.1884 -8.7660 -1.5192 21 6 3.1863 -8.7662 1.5231 22 6 0.8731 -10.0254 -0.0005 23 6 -0.0028 -9.9218 -1.2507 24 6 1.6044 -11.3693 -0.0007 25 6 -0.0056 -9.9225 1.2478 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6582 2.1312 -0.0008 30 1 4.0682 3.0744 0.8894 31 1 4.1946 2.8016 -1.9982 32 1 5.3551 0.0040 0.0109 33 1 4.1311 -2.1318 0.0020 34 1 2.9323 -3.6009 -0.8883 35 1 2.9323 -3.6002 0.8916 36 1 0.7441 -4.7672 0.8913 37 1 0.7447 -4.7675 -0.8887 38 1 2.8372 -6.0971 -0.8885 39 1 2.8372 -6.0973 0.8915 40 1 3.9174 -7.9557 -1.5186 41 1 3.7090 -9.7236 -1.5191 42 1 2.5641 -8.6924 -2.4096 43 1 2.5607 -8.6927 2.4127 44 1 3.7069 -9.7238 1.5236 45 1 3.9152 -7.9559 1.5237 46 1 0.6231 -9.9951 -2.1400 47 1 -0.7321 -10.7320 -1.2515 48 1 -0.5238 -8.9644 -1.2509 49 1 2.2287 -11.4434 0.8897 50 1 0.8753 -12.1797 -0.0013 51 1 2.2300 -11.4423 -0.8902 52 1 -0.5266 -8.9651 1.2475 53 1 -0.7348 -10.7326 1.2466 54 1 0.6185 -9.9963 2.1385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_14925284_18527726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:54:39 Heat of formation + Delta-G solvation = -163.032796 kcal Electronic energy + Delta-G solvation = -27441.294201 eV Core-core repulsion = 23693.946178 eV Total energy + Delta-G solvation = -3747.348023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.203 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.39105 -39.32657 -38.28543 -37.23648 -36.88264 -34.18022 -33.29425 -31.51634 -29.50436 -29.15233 -28.02775 -27.91417 -27.43549 -27.20480 -25.93454 -23.62547 -22.19783 -21.73717 -20.47102 -19.18100 -18.37165 -17.77298 -17.55569 -17.04036 -16.35877 -16.23661 -16.06261 -16.01540 -15.72008 -15.24538 -15.10258 -14.92611 -14.78333 -14.58725 -14.37152 -14.08830 -14.03393 -13.80028 -13.74595 -13.50445 -13.45031 -13.29085 -13.07383 -12.97745 -12.97261 -12.79388 -12.69290 -12.60221 -12.44454 -12.25292 -12.08023 -11.97779 -11.92989 -11.75761 -11.72210 -11.52962 -11.47851 -11.39198 -10.43730 -10.39576 -10.12780 -9.80233 -9.06561 0.30426 0.35449 1.16126 1.29246 1.42196 1.49888 1.67585 1.90478 1.98310 2.11113 2.44553 2.66544 3.48001 3.65130 3.74981 3.78573 3.79684 3.93819 3.96416 4.07312 4.07791 4.16136 4.18331 4.23855 4.26942 4.37771 4.42653 4.57074 4.59925 4.61944 4.65156 4.65897 4.66130 4.71432 4.76753 4.81338 4.83622 4.90033 4.94824 4.95606 4.99071 5.06309 5.06446 5.15504 5.23358 5.29209 5.29623 5.36556 5.36894 5.39850 5.45953 5.48533 5.53669 5.54203 5.79519 6.39308 6.56696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.114 4.114 3 C -0.053 4.053 4 C -0.155 4.155 5 C -0.075 4.075 6 O -0.540 6.540 7 Si 0.949 3.051 8 H -0.252 1.252 9 H -0.254 1.254 10 H -0.252 1.252 11 C -0.091 4.091 12 C -0.201 4.201 13 C 0.135 3.865 14 O -0.307 6.307 15 C 0.057 3.943 16 C -0.123 4.123 17 C 0.090 3.910 18 O -0.623 6.623 19 Si 1.288 2.712 20 C -0.511 4.511 21 C -0.512 4.512 22 C -0.375 4.375 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.134 4.134 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.117 0.883 31 H 0.376 0.624 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.056 0.944 52 H 0.060 0.940 53 H 0.053 0.947 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 -1.611 -0.073 2.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.115 4.115 3 C -0.071 4.071 4 C -0.155 4.155 5 C -0.186 4.186 6 O -0.345 6.345 7 Si 0.772 3.228 8 H -0.176 1.176 9 H -0.178 1.178 10 H -0.176 1.176 11 C -0.109 4.109 12 C -0.219 4.219 13 C 0.089 3.911 14 O -0.221 6.221 15 C -0.018 4.018 16 C -0.160 4.160 17 C 0.014 3.986 18 O -0.582 6.582 19 Si 1.419 2.581 20 C -0.613 4.613 21 C -0.613 4.613 22 C -0.418 4.418 23 C -0.191 4.191 24 C -0.194 4.194 25 C -0.191 4.191 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.135 0.865 31 H 0.223 0.777 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.075 0.925 52 H 0.079 0.921 53 H 0.072 0.928 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.881 -1.269 0.376 2.300 hybrid contribution 0.433 -0.946 -0.334 1.093 sum 2.314 -2.215 0.042 3.204 Atomic orbital electron populations 1.20640 0.90110 1.03057 1.02564 1.19362 0.96833 0.90154 1.05164 1.20752 0.93021 0.97078 0.96266 1.20176 0.94720 0.94829 1.05797 1.24886 1.09601 0.92256 0.91817 1.86507 1.87001 1.45612 1.15335 0.85706 0.74943 0.80546 0.81600 1.17614 1.17847 1.17583 1.20787 0.99281 0.91921 0.98864 1.21145 0.92946 0.99177 1.08682 1.18832 0.90265 0.85604 0.96364 1.86051 1.35598 1.12069 1.88354 1.22716 0.94336 0.82947 1.01799 1.21517 0.98797 0.90203 1.05529 1.21797 0.90817 0.85161 1.00824 1.85332 1.51454 1.29926 1.91512 0.76704 0.60496 0.55813 0.65071 1.27036 1.11228 1.04702 1.18361 1.27037 1.11203 1.04705 1.18386 1.25784 1.07937 1.09761 0.98366 1.21514 0.99393 1.02131 0.96107 1.21555 1.00131 0.96154 1.01553 1.21514 0.99377 1.02133 0.96121 0.91175 0.91430 0.90976 0.84730 0.86528 0.77692 0.86104 0.85153 0.91654 0.91627 0.89581 0.89596 0.92398 0.92391 0.91522 0.90664 0.90823 0.90823 0.90663 0.91518 0.92700 0.92760 0.92139 0.92521 0.92467 0.92512 0.92136 0.92759 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.06 9.79 36.00 0.35 0.30 16 2 C -0.11 -0.20 5.89 -104.47 -0.62 -0.81 16 3 C -0.05 -0.06 9.26 -39.61 -0.37 -0.43 16 4 C -0.15 -0.12 5.39 -104.60 -0.56 -0.68 16 5 C -0.07 0.02 2.82 36.00 0.10 0.12 16 6 O -0.54 -0.23 12.77 -35.23 -0.45 -0.68 16 7 Si 0.95 -0.46 25.06 -169.99 -4.26 -4.73 16 8 H -0.25 0.08 7.11 56.52 0.40 0.48 16 9 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 10 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 11 C -0.09 -0.06 8.66 -39.61 -0.34 -0.40 16 12 C -0.20 -0.15 9.04 -39.43 -0.36 -0.51 16 13 C 0.13 0.25 6.66 -39.21 -0.26 -0.01 16 14 O -0.31 -0.47 9.18 -19.40 -0.18 -0.65 16 15 C 0.06 -0.07 4.74 37.16 0.18 0.11 16 16 C -0.12 0.14 5.95 -26.73 -0.16 -0.02 16 17 C 0.09 -0.15 5.12 37.16 0.19 0.04 16 18 O -0.62 0.14 8.56 -35.23 -0.30 -0.16 16 19 Si 1.29 -1.91 8.45 -169.99 -1.44 -3.35 16 20 C -0.51 0.61 8.50 101.05 0.86 1.47 16 21 C -0.51 0.61 8.50 101.05 0.86 1.46 16 22 C -0.37 0.21 0.53 -90.62 -0.05 0.16 16 23 C -0.13 0.02 7.85 37.16 0.29 0.31 16 24 C -0.14 0.12 7.85 37.16 0.29 0.41 16 25 C -0.13 0.02 7.85 37.16 0.29 0.31 16 26 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.07 -0.03 8.09 -51.93 -0.42 -0.45 16 28 H 0.07 0.07 7.53 -51.93 -0.39 -0.32 16 29 H 0.13 0.03 8.06 -52.48 -0.42 -0.39 16 30 H 0.12 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.38 -0.99 8.70 45.56 0.40 -0.60 16 32 H 0.12 -0.09 4.87 -52.48 -0.26 -0.34 16 33 H 0.13 -0.17 6.30 -52.49 -0.33 -0.51 16 34 H 0.07 -0.15 7.66 -51.93 -0.40 -0.55 16 35 H 0.07 -0.15 7.66 -51.93 -0.40 -0.55 16 36 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.06 -0.18 7.21 -51.93 -0.37 -0.55 16 39 H 0.06 -0.18 7.21 -51.93 -0.37 -0.55 16 40 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 41 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 42 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 43 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 44 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 45 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 46 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 47 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 48 H 0.06 0.01 7.96 -51.93 -0.41 -0.41 16 49 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 50 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 51 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 52 H 0.06 0.01 7.96 -51.93 -0.41 -0.41 16 53 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 54 H 0.05 -0.04 7.80 -51.93 -0.40 -0.44 16 LS Contribution 423.08 15.07 6.38 6.38 Total: 0.00 -4.83 423.08 -9.11 -13.94 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -9.56 Total: -12.58 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.70 Total: 1.82 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -0.93 Total: -1.49 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: -5.70 Total: -8.07 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -4.83 -9.11 -13.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14925284_18527726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.090 kcal (2) G-P(sol) polarization free energy of solvation -4.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds