Wall clock time and date at job start Mon Mar 8 2021 07:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38123 * 120.03150 * 2 1 4 4 C 1.38281 * 120.05920 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.94622 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47279 * 299.99759 * 5 4 3 7 7 Si 1.86297 * 109.47223 * 180.02562 * 5 4 3 8 8 H 1.48504 * 109.47312 * 59.99904 * 7 5 4 9 9 H 1.48499 * 109.47213 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47226 * 299.99928 * 7 5 4 11 11 C 1.38249 * 120.10916 * 359.74561 * 4 3 2 12 12 C 1.38161 * 120.05756 * 0.50906 * 11 4 3 13 13 C 1.38714 * 119.94312 * 359.48931 * 12 11 4 14 14 O 1.35892 * 120.05889 * 180.27992 * 13 12 11 15 15 C 1.42901 * 116.99992 * 359.97438 * 14 13 12 16 16 C 1.53001 * 109.47234 * 180.02562 * 15 14 13 17 17 C 1.53008 * 109.47121 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47095 * 180.02562 * 17 16 15 19 19 Si 1.63095 * 113.99941 * 180.02562 * 18 17 16 20 20 C 1.86309 * 109.47069 * 300.00126 * 19 18 17 21 21 C 1.86301 * 109.47289 * 59.99752 * 19 18 17 22 22 C 1.86299 * 109.47377 * 180.02562 * 19 18 17 23 23 C 1.53001 * 109.46838 * 59.99768 * 22 19 18 24 24 C 1.52996 * 109.47417 * 179.97438 * 22 19 18 25 25 C 1.53006 * 109.46777 * 300.00014 * 22 19 18 26 26 H 1.09000 * 109.47146 * 270.02559 * 1 2 3 27 27 H 1.09006 * 109.47104 * 30.02403 * 1 2 3 28 28 H 1.09004 * 109.47561 * 150.02653 * 1 2 3 29 29 H 1.08006 * 119.96983 * 359.94984 * 3 2 1 30 30 H 1.08997 * 109.47338 * 59.99925 * 5 4 3 31 31 H 0.96692 * 114.00336 * 300.00216 * 6 5 4 32 32 H 1.08004 * 119.97354 * 180.25064 * 11 4 3 33 33 H 1.08002 * 120.03267 * 179.77413 * 12 11 4 34 34 H 1.08998 * 109.47276 * 300.00247 * 15 14 13 35 35 H 1.08998 * 109.47191 * 60.00113 * 15 14 13 36 36 H 1.08995 * 109.47348 * 299.99785 * 16 15 14 37 37 H 1.09003 * 109.47153 * 60.00621 * 16 15 14 38 38 H 1.08995 * 109.46840 * 300.00103 * 17 16 15 39 39 H 1.09003 * 109.46594 * 60.00286 * 17 16 15 40 40 H 1.08993 * 109.46960 * 60.00064 * 20 19 18 41 41 H 1.08997 * 109.46844 * 180.02562 * 20 19 18 42 42 H 1.08997 * 109.46884 * 300.00003 * 20 19 18 43 43 H 1.09004 * 109.47272 * 60.00184 * 21 19 18 44 44 H 1.08997 * 109.47222 * 179.97438 * 21 19 18 45 45 H 1.08993 * 109.47478 * 300.00387 * 21 19 18 46 46 H 1.08996 * 109.47280 * 60.00297 * 23 22 19 47 47 H 1.09003 * 109.46757 * 180.02562 * 23 22 19 48 48 H 1.08996 * 109.47074 * 299.99817 * 23 22 19 49 49 H 1.08997 * 109.47192 * 59.99830 * 24 22 19 50 50 H 1.09003 * 109.47063 * 179.97438 * 24 22 19 51 51 H 1.08996 * 109.47008 * 299.99890 * 24 22 19 52 52 H 1.08996 * 109.47212 * 60.00129 * 25 22 19 53 53 H 1.09003 * 109.46758 * 179.97438 * 25 22 19 54 54 H 1.08997 * 109.47050 * 299.99692 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1958 0.0000 4 6 3.5810 1.1965 0.0005 5 6 4.3326 2.5026 -0.0001 6 8 3.9869 3.2507 -1.1675 7 14 6.1647 2.1648 0.0001 8 1 6.5247 1.3861 -1.2121 9 1 6.9054 3.4519 0.0002 10 1 6.5246 1.3872 1.2130 11 6 4.2751 0.0009 0.0064 12 6 3.5884 -1.1980 0.0011 13 6 2.2013 -1.2014 0.0006 14 8 1.5235 -2.3792 0.0011 15 6 2.3035 -3.5766 0.0016 16 6 1.3732 -4.7913 0.0015 17 6 2.2084 -6.0733 0.0014 18 8 1.3395 -7.2078 0.0007 19 14 2.1190 -8.6404 0.0012 20 6 3.1884 -8.7660 -1.5192 21 6 3.1863 -8.7662 1.5231 22 6 0.8731 -10.0254 -0.0005 23 6 -0.0028 -9.9218 -1.2507 24 6 1.6044 -11.3693 -0.0007 25 6 -0.0056 -9.9225 1.2478 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6582 2.1312 -0.0008 30 1 4.0682 3.0744 0.8894 31 1 4.1946 2.8016 -1.9982 32 1 5.3551 0.0040 0.0109 33 1 4.1311 -2.1318 0.0020 34 1 2.9323 -3.6009 -0.8883 35 1 2.9323 -3.6002 0.8916 36 1 0.7441 -4.7672 0.8913 37 1 0.7447 -4.7675 -0.8887 38 1 2.8372 -6.0971 -0.8885 39 1 2.8372 -6.0973 0.8915 40 1 3.9174 -7.9557 -1.5186 41 1 3.7090 -9.7236 -1.5191 42 1 2.5641 -8.6924 -2.4096 43 1 2.5607 -8.6927 2.4127 44 1 3.7069 -9.7238 1.5236 45 1 3.9152 -7.9559 1.5237 46 1 0.6231 -9.9951 -2.1400 47 1 -0.7321 -10.7320 -1.2515 48 1 -0.5238 -8.9644 -1.2509 49 1 2.2287 -11.4434 0.8897 50 1 0.8753 -12.1797 -0.0013 51 1 2.2300 -11.4423 -0.8902 52 1 -0.5266 -8.9651 1.2475 53 1 -0.7348 -10.7326 1.2466 54 1 0.6185 -9.9963 2.1385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_14925284_18527726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:54:38 Heat of formation + Delta-G solvation = -153.604136 kcal Electronic energy + Delta-G solvation = -27440.885343 eV Core-core repulsion = 23693.946178 eV Total energy + Delta-G solvation = -3746.939166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.203 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.39701 -39.30673 -38.18617 -37.22491 -36.83055 -34.16701 -33.24210 -31.52013 -29.38308 -29.06321 -28.05413 -27.84568 -27.38193 -27.12678 -25.89209 -23.57191 -22.12891 -21.75108 -20.42001 -19.17565 -18.34841 -17.68319 -17.46120 -17.03693 -16.32111 -16.18500 -15.99823 -15.96787 -15.70081 -15.18100 -15.07406 -14.86915 -14.75269 -14.56863 -14.34229 -14.10437 -13.93834 -13.74109 -13.74004 -13.38172 -13.37291 -13.17064 -12.99086 -12.95861 -12.92064 -12.77510 -12.68058 -12.53345 -12.39489 -12.22072 -12.08543 -11.94442 -11.84606 -11.70474 -11.65831 -11.51654 -11.35048 -11.29154 -10.37370 -10.31121 -10.05815 -9.83356 -9.09665 0.26588 0.32129 1.20375 1.43762 1.46687 1.52391 1.78531 1.92308 2.12921 2.17866 2.54487 2.63347 3.56028 3.67096 3.81320 3.83740 3.89854 4.02296 4.11228 4.12312 4.12360 4.23145 4.26926 4.36381 4.42487 4.45035 4.46576 4.59594 4.63594 4.73749 4.74464 4.75614 4.78150 4.79508 4.80500 4.82340 4.82441 4.89632 4.99787 5.06418 5.07933 5.08945 5.09348 5.21290 5.21502 5.27013 5.34662 5.37287 5.40625 5.44523 5.50872 5.54890 5.60744 5.64613 5.78743 6.40264 6.72860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.061 4.061 4 C -0.158 4.158 5 C -0.075 4.075 6 O -0.554 6.554 7 Si 0.982 3.018 8 H -0.252 1.252 9 H -0.277 1.277 10 H -0.257 1.257 11 C -0.098 4.098 12 C -0.204 4.204 13 C 0.120 3.880 14 O -0.323 6.323 15 C 0.053 3.947 16 C -0.119 4.119 17 C 0.080 3.920 18 O -0.641 6.641 19 Si 1.317 2.683 20 C -0.518 4.518 21 C -0.518 4.518 22 C -0.385 4.385 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.388 0.612 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.049 0.951 51 H 0.063 0.937 52 H 0.055 0.945 53 H 0.047 0.953 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 -1.734 -0.121 3.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.132 4.132 3 C -0.079 4.079 4 C -0.159 4.159 5 C -0.185 4.185 6 O -0.361 6.361 7 Si 0.807 3.193 8 H -0.175 1.175 9 H -0.203 1.203 10 H -0.181 1.181 11 C -0.116 4.116 12 C -0.222 4.222 13 C 0.075 3.925 14 O -0.237 6.237 15 C -0.022 4.022 16 C -0.157 4.157 17 C 0.005 3.995 18 O -0.600 6.600 19 Si 1.447 2.553 20 C -0.619 4.619 21 C -0.619 4.619 22 C -0.427 4.427 23 C -0.194 4.194 24 C -0.198 4.198 25 C -0.194 4.194 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.139 0.861 31 H 0.237 0.763 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.068 0.932 51 H 0.082 0.918 52 H 0.074 0.926 53 H 0.066 0.934 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.130 -1.415 0.319 3.450 hybrid contribution 0.015 -0.909 -0.325 0.965 sum 3.145 -2.323 -0.007 3.910 Atomic orbital electron populations 1.20619 0.89780 1.03067 1.02633 1.19583 0.97383 0.90587 1.05618 1.20864 0.93413 0.97130 0.96516 1.20324 0.94675 0.95377 1.05479 1.24957 1.09776 0.91877 0.91915 1.86474 1.87194 1.46266 1.16166 0.85227 0.73873 0.79007 0.81181 1.17531 1.20282 1.18098 1.21006 1.00027 0.91871 0.98704 1.21403 0.92673 1.00150 1.08002 1.19010 0.90867 0.85740 0.96894 1.86028 1.36595 1.12659 1.88459 1.22885 0.94348 0.81861 1.03110 1.21473 0.98828 0.90891 1.04527 1.22001 0.90796 0.84269 1.02445 1.85321 1.52366 1.30668 1.91689 0.76164 0.59592 0.54727 0.64779 1.27091 1.11464 1.05203 1.18178 1.27093 1.11441 1.05204 1.18211 1.25961 1.08285 1.10788 0.97711 1.21541 0.99500 1.01585 0.96799 1.21599 1.00156 0.95687 1.02319 1.21542 0.99484 1.01587 0.96814 0.91067 0.90615 0.91710 0.84304 0.86053 0.76305 0.84806 0.83159 0.90264 0.90278 0.90620 0.90609 0.90757 0.90768 0.90777 0.90382 0.91237 0.91246 0.90381 0.90778 0.92043 0.93420 0.92627 0.91769 0.93235 0.91754 0.92624 0.93419 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.20 9.79 71.23 0.70 0.50 16 2 C -0.13 -0.53 5.89 -19.77 -0.12 -0.65 16 3 C -0.06 -0.16 9.26 22.25 0.21 0.04 16 4 C -0.16 -0.21 5.39 -19.85 -0.11 -0.32 16 5 C -0.07 0.06 2.82 71.23 0.20 0.26 16 6 O -0.55 -0.38 12.77 -148.98 -1.90 -2.28 16 7 Si 0.98 -1.42 25.06 68.60 1.72 0.30 16 8 H -0.25 0.42 7.11 99.48 0.71 1.13 16 9 H -0.28 -0.64 7.11 99.48 0.71 0.07 16 10 H -0.26 0.18 7.11 99.48 0.71 0.89 16 11 C -0.10 -0.06 8.66 22.25 0.19 0.13 16 12 C -0.20 -0.18 9.04 22.37 0.20 0.03 16 13 C 0.12 0.46 6.66 22.51 0.15 0.61 16 14 O -0.32 -1.11 9.18 -92.34 -0.85 -1.96 16 15 C 0.05 -0.15 4.74 71.98 0.34 0.19 16 16 C -0.12 0.25 5.95 30.60 0.18 0.43 16 17 C 0.08 -0.33 5.12 71.98 0.37 0.03 16 18 O -0.64 0.39 8.56 -148.98 -1.28 -0.89 16 19 Si 1.32 -4.49 8.45 68.60 0.58 -3.91 16 20 C -0.52 1.70 8.50 113.37 0.96 2.67 16 21 C -0.52 1.68 8.50 113.37 0.96 2.65 16 22 C -0.39 0.30 0.53 -10.79 -0.01 0.30 16 23 C -0.14 -0.06 7.85 71.98 0.56 0.51 16 24 C -0.14 0.24 7.85 71.98 0.56 0.80 16 25 C -0.14 -0.06 7.85 71.98 0.56 0.50 16 26 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.07 -0.02 8.09 -2.38 -0.02 -0.04 16 28 H 0.06 0.21 7.53 -2.38 -0.02 0.19 16 29 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 30 H 0.12 -0.26 7.96 -2.39 -0.02 -0.27 16 31 H 0.39 -2.14 8.70 -74.06 -0.64 -2.78 16 32 H 0.13 -0.35 4.87 -2.91 -0.01 -0.36 16 33 H 0.15 -0.63 6.30 -2.91 -0.02 -0.64 16 34 H 0.08 -0.46 7.66 -2.39 -0.02 -0.48 16 35 H 0.08 -0.45 7.66 -2.39 -0.02 -0.47 16 36 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.07 -0.56 7.21 -2.39 -0.02 -0.58 16 39 H 0.07 -0.56 7.21 -2.39 -0.02 -0.58 16 40 H 0.07 -0.35 7.48 -2.39 -0.02 -0.37 16 41 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 42 H 0.07 -0.16 7.79 -2.39 -0.02 -0.17 16 43 H 0.07 -0.15 7.79 -2.38 -0.02 -0.17 16 44 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 45 H 0.07 -0.35 7.48 -2.39 -0.02 -0.36 16 46 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 47 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.05 0.07 7.96 -2.39 -0.02 0.05 16 49 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 50 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 51 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 52 H 0.05 0.07 7.96 -2.39 -0.02 0.05 16 53 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 54 H 0.06 -0.07 7.80 -2.39 -0.02 -0.09 16 Total: 0.00 -11.20 423.08 5.16 -6.04 By element: Atomic # 1 Polarization: -6.95 SS G_CDS: 0.95 Total: -6.00 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.93 Total: 8.68 kcal Atomic # 8 Polarization: -1.10 SS G_CDS: -4.02 Total: -5.12 kcal Atomic # 14 Polarization: -5.90 SS G_CDS: 2.30 Total: -3.60 kcal Total: -11.20 5.16 -6.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14925284_18527726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.566 kcal (2) G-P(sol) polarization free energy of solvation -11.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds