Wall clock time and date at job start Mon Mar 8 2021 08:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38130 * 120.02975 * 2 1 4 4 C 1.38284 * 120.06027 * 180.27703 * 3 2 1 5 5 C 1.50692 * 119.94687 * 179.74628 * 4 3 2 6 6 O 1.42895 * 109.47386 * 300.02386 * 5 4 3 7 7 Si 1.86302 * 109.47211 * 180.02562 * 5 4 3 8 8 H 1.48502 * 109.47208 * 300.00050 * 7 5 4 9 9 H 1.48505 * 109.47219 * 60.00133 * 7 5 4 10 10 H 1.48498 * 109.47198 * 179.97438 * 7 5 4 11 11 C 1.38252 * 120.10686 * 359.76676 * 4 3 2 12 12 C 1.38169 * 120.05802 * 359.97438 * 11 4 3 13 13 C 1.38710 * 119.94203 * 0.02562 * 12 11 4 14 14 O 1.35894 * 120.05453 * 180.02562 * 13 12 11 15 15 C 1.42906 * 117.00187 * 359.97438 * 14 13 12 16 16 C 1.50693 * 109.47463 * 180.02562 * 15 14 13 17 17 C 1.38233 * 120.00207 * 89.99418 * 16 15 14 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 15 19 19 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 20 20 Si 1.86795 * 120.00205 * 180.02562 * 19 18 17 21 21 C 1.86297 * 109.47192 * 89.99958 * 20 19 18 22 22 C 1.86301 * 109.47283 * 209.99980 * 20 19 18 23 23 C 1.86301 * 109.47118 * 329.99845 * 20 19 18 24 24 C 1.38238 * 119.99693 * 359.97438 * 19 18 17 25 25 C 1.38234 * 120.00067 * 0.02562 * 24 19 18 26 26 H 1.09000 * 109.47658 * 270.22623 * 1 2 3 27 27 H 1.09000 * 109.47345 * 30.23287 * 1 2 3 28 28 H 1.09003 * 109.47081 * 150.22856 * 1 2 3 29 29 H 1.07998 * 119.96847 * 0.02638 * 3 2 1 30 30 H 1.09001 * 109.47093 * 60.02631 * 5 4 3 31 31 H 0.96697 * 114.00624 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.96616 * 179.97438 * 11 4 3 33 33 H 1.07995 * 120.02451 * 179.97438 * 12 11 4 34 34 H 1.09000 * 109.46902 * 60.00273 * 15 14 13 35 35 H 1.09001 * 109.46622 * 300.00169 * 15 14 13 36 36 H 1.08002 * 120.00157 * 0.02562 * 17 16 15 37 37 H 1.07999 * 120.00009 * 180.28389 * 18 17 16 38 38 H 1.08999 * 109.47282 * 60.00138 * 21 20 19 39 39 H 1.08997 * 109.47709 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47505 * 300.00288 * 21 20 19 41 41 H 1.08998 * 109.47270 * 60.00089 * 22 20 19 42 42 H 1.08997 * 109.47416 * 180.02562 * 22 20 19 43 43 H 1.09006 * 109.46995 * 300.00168 * 22 20 19 44 44 H 1.09002 * 109.46976 * 60.00696 * 23 20 19 45 45 H 1.09005 * 109.47230 * 179.97438 * 23 20 19 46 46 H 1.08998 * 109.47233 * 299.99787 * 23 20 19 47 47 H 1.08001 * 119.99624 * 180.02562 * 24 19 18 48 48 H 1.07999 * 120.00008 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5810 1.1966 -0.0058 5 6 4.3325 2.5028 -0.0116 6 8 3.9810 3.2495 -1.1780 7 14 6.1647 2.1650 -0.0193 8 1 6.5301 1.3890 1.1929 9 1 6.5191 1.3847 -1.2321 10 1 6.9053 3.4522 -0.0256 11 6 4.2751 0.0010 -0.0067 12 6 3.5884 -1.1979 -0.0013 13 6 2.2013 -1.2013 0.0045 14 8 1.5236 -2.3791 0.0103 15 6 2.3036 -3.5765 0.0095 16 6 1.3874 -4.7729 0.0159 17 6 0.9621 -5.3241 -1.1783 18 6 0.1262 -6.4251 -1.1725 19 6 -0.2887 -6.9717 0.0275 20 14 -1.4176 -8.4599 0.0354 21 6 -0.3935 -10.0161 0.0384 22 6 -2.4890 -8.4186 1.5589 23 6 -2.4962 -8.4292 -1.4833 24 6 0.1327 -6.4174 1.2218 25 6 0.9686 -5.3164 1.2159 26 1 -0.3634 0.0041 1.0276 27 1 -0.3634 0.8879 -0.5174 28 1 -0.3633 -0.8920 -0.5103 29 1 1.6582 2.1312 0.0004 30 1 4.0724 3.0755 0.8786 31 1 4.4286 4.1038 -1.2480 32 1 5.3551 0.0042 -0.0117 33 1 4.1312 -2.1316 -0.0025 34 1 2.9365 -3.5984 0.8967 35 1 2.9284 -3.6025 -0.8833 36 1 1.2867 -4.8976 -2.1160 37 1 -0.2024 -6.8586 -2.1055 38 1 0.2375 -10.0341 0.9269 39 1 -1.0521 -10.8846 0.0434 40 1 0.2334 -10.0403 -0.8530 41 1 -3.0882 -7.5081 1.5572 42 1 -3.1474 -9.2872 1.5637 43 1 -1.8579 -8.4366 2.4475 44 1 -1.8693 -8.4534 -2.3747 45 1 -3.1547 -9.2978 -1.4790 46 1 -3.0954 -7.5186 -1.4850 47 1 -0.1911 -6.8447 2.1593 48 1 1.2982 -4.8837 2.1489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_14925284_9403676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:26 Heat of formation + Delta-G solvation = -71.861110 kcal Electronic energy + Delta-G solvation = -24844.649184 eV Core-core repulsion = 21373.645149 eV Total energy + Delta-G solvation = -3471.004035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37338 -40.07937 -38.81735 -37.26040 -34.05331 -32.90739 -31.88575 -31.53623 -29.59333 -28.45277 -28.42635 -27.97618 -27.55872 -25.99509 -23.48273 -23.33837 -21.80921 -21.56401 -19.11708 -18.47826 -17.92507 -17.03672 -17.00137 -16.46710 -16.06674 -15.75785 -15.58550 -15.55274 -14.74806 -14.54306 -14.37933 -14.23156 -14.21567 -14.13337 -14.08891 -13.93244 -13.85718 -13.53435 -13.37382 -13.27235 -13.26770 -13.11329 -13.06528 -12.89202 -12.59768 -12.31116 -12.14197 -12.10401 -11.83844 -11.68118 -11.63441 -11.05085 -10.91608 -10.83848 -10.31904 -9.78211 -9.72895 -9.69056 -8.98107 0.17298 0.37270 0.42600 0.54581 1.15944 1.43000 1.49627 1.69334 1.83798 1.88699 1.90558 2.32340 2.53395 2.69637 3.04288 3.44011 3.69964 3.80024 3.80448 3.86415 4.00253 4.08314 4.22732 4.23110 4.29558 4.42002 4.46700 4.51052 4.66670 4.69104 4.70537 4.71665 4.74265 4.74792 4.75368 4.75695 4.76353 4.88104 4.96676 5.00157 5.15186 5.28518 5.33558 5.40345 5.45337 5.47729 5.49459 5.52494 5.61146 5.61747 5.62596 5.84758 6.10971 6.45400 6.60518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.115 4.115 3 C -0.051 4.051 4 C -0.110 4.110 5 C -0.076 4.076 6 O -0.545 6.545 7 Si 0.945 3.055 8 H -0.251 1.251 9 H -0.248 1.248 10 H -0.257 1.257 11 C -0.089 4.089 12 C -0.200 4.200 13 C 0.134 3.866 14 O -0.303 6.303 15 C 0.099 3.901 16 C -0.088 4.088 17 C -0.106 4.106 18 C -0.092 4.092 19 C -0.361 4.361 20 Si 1.060 2.940 21 C -0.449 4.449 22 C -0.450 4.450 23 C -0.450 4.450 24 C -0.092 4.092 25 C -0.106 4.106 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.379 0.621 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.123 0.877 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -0.924 1.112 1.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.115 4.115 3 C -0.070 4.070 4 C -0.110 4.110 5 C -0.186 4.186 6 O -0.351 6.351 7 Si 0.768 3.232 8 H -0.175 1.175 9 H -0.172 1.172 10 H -0.181 1.181 11 C -0.107 4.107 12 C -0.219 4.219 13 C 0.088 3.912 14 O -0.217 6.217 15 C 0.025 3.975 16 C -0.088 4.088 17 C -0.124 4.124 18 C -0.110 4.110 19 C -0.403 4.403 20 Si 1.252 2.748 21 C -0.557 4.557 22 C -0.557 4.557 23 C -0.558 4.558 24 C -0.110 4.110 25 C -0.124 4.124 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.093 0.907 31 H 0.226 0.774 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.141 0.859 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.675 -1.614 1.001 2.015 hybrid contribution 0.393 0.680 0.108 0.793 sum 1.068 -0.934 1.109 1.800 Atomic orbital electron populations 1.20622 0.90160 1.03007 1.02453 1.19326 0.96781 0.90104 1.05319 1.20715 0.92993 0.97022 0.96225 1.19119 0.94051 0.92783 1.05090 1.24642 1.10088 0.93107 0.90785 1.86511 1.71091 1.34986 1.42502 0.85779 0.74606 0.81145 0.81696 1.17465 1.17160 1.18140 1.20716 0.99258 0.91778 0.98908 1.21112 0.92933 0.99065 1.08798 1.18836 0.90281 0.85641 0.96429 1.86161 1.35457 1.11761 1.88320 1.21645 0.92526 0.81119 1.02252 1.19454 0.99596 0.95689 0.94037 1.21151 0.97539 0.96481 0.97262 1.21078 0.96355 0.95324 0.98206 1.27476 1.07112 1.11509 0.94167 0.78179 0.65392 0.63924 0.67349 1.26123 1.09424 1.15490 1.04615 1.26136 1.09855 1.04697 1.15060 1.26137 1.09928 1.04693 1.15000 1.21078 0.96346 0.95300 0.98252 1.21146 0.97582 0.96513 0.97182 0.91252 0.91476 0.91039 0.84890 0.90692 0.77362 0.86111 0.85096 0.91024 0.91049 0.86138 0.85900 0.91176 0.91009 0.91168 0.91023 0.90937 0.91177 0.91174 0.90937 0.91021 0.85904 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.17 9.79 36.00 0.35 0.18 16 2 C -0.11 -0.34 5.89 -104.48 -0.62 -0.96 16 3 C -0.05 -0.13 9.26 -39.60 -0.37 -0.50 16 4 C -0.11 -0.27 5.42 -104.60 -0.57 -0.83 16 5 C -0.08 -0.03 2.81 36.00 0.10 0.08 16 6 O -0.55 -0.41 12.74 -35.23 -0.45 -0.86 16 7 Si 0.94 -0.04 25.07 -169.99 -4.26 -4.30 16 8 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 9 H -0.25 -0.36 7.11 56.52 0.40 0.05 16 10 H -0.26 0.01 7.11 56.52 0.40 0.41 16 11 C -0.09 -0.20 8.66 -39.60 -0.34 -0.54 16 12 C -0.20 -0.43 9.04 -39.43 -0.36 -0.79 16 13 C 0.13 0.42 6.66 -39.22 -0.26 0.16 16 14 O -0.30 -0.94 9.17 -19.41 -0.18 -1.12 16 15 C 0.10 0.09 4.86 36.00 0.18 0.27 16 16 C -0.09 -0.14 5.51 -104.63 -0.58 -0.72 16 17 C -0.11 -0.14 9.70 -39.58 -0.38 -0.53 16 18 C -0.09 -0.05 9.29 -39.58 -0.37 -0.42 16 19 C -0.36 0.00 4.59 -39.58 -0.18 -0.18 16 20 Si 1.06 -2.57 12.32 -169.99 -2.09 -4.66 16 21 C -0.45 0.68 8.65 101.05 0.87 1.55 16 22 C -0.45 0.76 8.53 101.05 0.86 1.62 16 23 C -0.45 0.74 8.53 101.05 0.86 1.60 16 24 C -0.09 -0.05 9.29 -39.58 -0.37 -0.42 16 25 C -0.11 -0.14 9.70 -39.58 -0.38 -0.52 16 26 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.07 0.04 8.09 -51.93 -0.42 -0.38 16 28 H 0.07 0.17 7.53 -51.93 -0.39 -0.23 16 29 H 0.13 0.17 8.06 -52.49 -0.42 -0.25 16 30 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.38 -1.41 8.74 45.56 0.40 -1.01 16 32 H 0.12 0.09 4.87 -52.49 -0.26 -0.17 16 33 H 0.13 0.01 6.30 -52.49 -0.33 -0.32 16 34 H 0.07 -0.02 7.61 -51.93 -0.40 -0.42 16 35 H 0.07 -0.01 7.60 -51.93 -0.39 -0.41 16 36 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 37 H 0.12 -0.17 7.43 -52.49 -0.39 -0.55 16 38 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 41 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 42 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 43 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 44 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 45 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 46 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 47 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 48 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 LS Contribution 393.82 15.07 5.93 5.93 Total: 0.00 -6.14 393.82 -9.76 -15.90 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: -7.16 Total: -9.94 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.55 Total: -0.94 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -0.63 Total: -1.98 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: -6.36 Total: -8.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -6.14 -9.76 -15.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14925284_9403676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.963 kcal (2) G-P(sol) polarization free energy of solvation -6.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds