Wall clock time and date at job start Mon Mar 8 2021 08:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38130 * 120.02975 * 2 1 4 4 C 1.38284 * 120.06027 * 180.27703 * 3 2 1 5 5 C 1.50692 * 119.94687 * 179.74628 * 4 3 2 6 6 O 1.42895 * 109.47386 * 300.02386 * 5 4 3 7 7 Si 1.86302 * 109.47211 * 180.02562 * 5 4 3 8 8 H 1.48502 * 109.47208 * 300.00050 * 7 5 4 9 9 H 1.48505 * 109.47219 * 60.00133 * 7 5 4 10 10 H 1.48498 * 109.47198 * 179.97438 * 7 5 4 11 11 C 1.38252 * 120.10686 * 359.76676 * 4 3 2 12 12 C 1.38169 * 120.05802 * 359.97438 * 11 4 3 13 13 C 1.38710 * 119.94203 * 0.02562 * 12 11 4 14 14 O 1.35894 * 120.05453 * 180.02562 * 13 12 11 15 15 C 1.42906 * 117.00187 * 359.97438 * 14 13 12 16 16 C 1.50693 * 109.47463 * 180.02562 * 15 14 13 17 17 C 1.38233 * 120.00207 * 89.99418 * 16 15 14 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 15 19 19 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 20 20 Si 1.86795 * 120.00205 * 180.02562 * 19 18 17 21 21 C 1.86297 * 109.47192 * 89.99958 * 20 19 18 22 22 C 1.86301 * 109.47283 * 209.99980 * 20 19 18 23 23 C 1.86301 * 109.47118 * 329.99845 * 20 19 18 24 24 C 1.38238 * 119.99693 * 359.97438 * 19 18 17 25 25 C 1.38234 * 120.00067 * 0.02562 * 24 19 18 26 26 H 1.09000 * 109.47658 * 270.22623 * 1 2 3 27 27 H 1.09000 * 109.47345 * 30.23287 * 1 2 3 28 28 H 1.09003 * 109.47081 * 150.22856 * 1 2 3 29 29 H 1.07998 * 119.96847 * 0.02638 * 3 2 1 30 30 H 1.09001 * 109.47093 * 60.02631 * 5 4 3 31 31 H 0.96697 * 114.00624 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.96616 * 179.97438 * 11 4 3 33 33 H 1.07995 * 120.02451 * 179.97438 * 12 11 4 34 34 H 1.09000 * 109.46902 * 60.00273 * 15 14 13 35 35 H 1.09001 * 109.46622 * 300.00169 * 15 14 13 36 36 H 1.08002 * 120.00157 * 0.02562 * 17 16 15 37 37 H 1.07999 * 120.00009 * 180.28389 * 18 17 16 38 38 H 1.08999 * 109.47282 * 60.00138 * 21 20 19 39 39 H 1.08997 * 109.47709 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47505 * 300.00288 * 21 20 19 41 41 H 1.08998 * 109.47270 * 60.00089 * 22 20 19 42 42 H 1.08997 * 109.47416 * 180.02562 * 22 20 19 43 43 H 1.09006 * 109.46995 * 300.00168 * 22 20 19 44 44 H 1.09002 * 109.46976 * 60.00696 * 23 20 19 45 45 H 1.09005 * 109.47230 * 179.97438 * 23 20 19 46 46 H 1.08998 * 109.47233 * 299.99787 * 23 20 19 47 47 H 1.08001 * 119.99624 * 180.02562 * 24 19 18 48 48 H 1.07999 * 120.00008 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5810 1.1966 -0.0058 5 6 4.3325 2.5028 -0.0116 6 8 3.9810 3.2495 -1.1780 7 14 6.1647 2.1650 -0.0193 8 1 6.5301 1.3890 1.1929 9 1 6.5191 1.3847 -1.2321 10 1 6.9053 3.4522 -0.0256 11 6 4.2751 0.0010 -0.0067 12 6 3.5884 -1.1979 -0.0013 13 6 2.2013 -1.2013 0.0045 14 8 1.5236 -2.3791 0.0103 15 6 2.3036 -3.5765 0.0095 16 6 1.3874 -4.7729 0.0159 17 6 0.9621 -5.3241 -1.1783 18 6 0.1262 -6.4251 -1.1725 19 6 -0.2887 -6.9717 0.0275 20 14 -1.4176 -8.4599 0.0354 21 6 -0.3935 -10.0161 0.0384 22 6 -2.4890 -8.4186 1.5589 23 6 -2.4962 -8.4292 -1.4833 24 6 0.1327 -6.4174 1.2218 25 6 0.9686 -5.3164 1.2159 26 1 -0.3634 0.0041 1.0276 27 1 -0.3634 0.8879 -0.5174 28 1 -0.3633 -0.8920 -0.5103 29 1 1.6582 2.1312 0.0004 30 1 4.0724 3.0755 0.8786 31 1 4.4286 4.1038 -1.2480 32 1 5.3551 0.0042 -0.0117 33 1 4.1312 -2.1316 -0.0025 34 1 2.9365 -3.5984 0.8967 35 1 2.9284 -3.6025 -0.8833 36 1 1.2867 -4.8976 -2.1160 37 1 -0.2024 -6.8586 -2.1055 38 1 0.2375 -10.0341 0.9269 39 1 -1.0521 -10.8846 0.0434 40 1 0.2334 -10.0403 -0.8530 41 1 -3.0882 -7.5081 1.5572 42 1 -3.1474 -9.2872 1.5637 43 1 -1.8579 -8.4366 2.4475 44 1 -1.8693 -8.4534 -2.3747 45 1 -3.1547 -9.2978 -1.4790 46 1 -3.0954 -7.5186 -1.4850 47 1 -0.1911 -6.8447 2.1593 48 1 1.2982 -4.8837 2.1489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_14925284_9403676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:25 Heat of formation + Delta-G solvation = -61.917133 kcal Electronic energy + Delta-G solvation = -24844.217981 eV Core-core repulsion = 21373.645149 eV Total energy + Delta-G solvation = -3470.572832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49404 -40.11048 -38.89473 -37.29595 -34.16369 -32.95591 -31.89517 -31.63598 -29.44887 -28.29880 -28.27437 -28.09899 -27.60418 -26.05721 -23.49781 -23.43796 -21.85817 -21.67612 -19.24313 -18.48021 -17.97161 -17.10412 -17.06542 -16.53604 -16.08477 -15.80255 -15.67210 -15.62591 -14.78116 -14.58206 -14.38377 -14.29130 -14.19529 -14.08952 -14.04850 -13.87233 -13.73441 -13.53578 -13.40025 -13.17470 -13.14185 -13.11941 -12.98076 -12.96718 -12.60169 -12.39582 -12.18919 -12.14428 -11.86611 -11.73692 -11.69729 -10.92766 -10.78584 -10.76261 -10.31053 -9.87310 -9.82096 -9.70124 -9.12830 0.14781 0.21735 0.27933 0.50727 1.16499 1.44127 1.49132 1.83061 1.89472 1.99211 2.02126 2.30235 2.56557 2.66267 3.00944 3.46100 3.62979 3.70355 3.79237 3.80978 3.96317 4.06558 4.18994 4.20348 4.22233 4.36733 4.43792 4.51739 4.59367 4.67474 4.70053 4.76248 4.84321 4.84419 4.85131 4.88330 4.88906 4.89480 4.90381 4.98796 5.14653 5.16000 5.20717 5.33591 5.39197 5.46831 5.55606 5.58818 5.58872 5.67575 5.70260 5.72478 6.10896 6.32820 6.83346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.130 4.130 3 C -0.060 4.060 4 C -0.122 4.122 5 C -0.077 4.077 6 O -0.563 6.563 7 Si 0.977 3.023 8 H -0.258 1.258 9 H -0.273 1.273 10 H -0.254 1.254 11 C -0.101 4.101 12 C -0.204 4.204 13 C 0.118 3.882 14 O -0.317 6.317 15 C 0.098 3.902 16 C -0.102 4.102 17 C -0.123 4.123 18 C -0.103 4.103 19 C -0.373 4.373 20 Si 1.128 2.872 21 C -0.462 4.462 22 C -0.462 4.462 23 C -0.463 4.463 24 C -0.103 4.103 25 C -0.122 4.122 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.398 0.602 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.140 0.860 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 -0.976 1.373 1.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C -0.078 4.078 4 C -0.122 4.122 5 C -0.187 4.187 6 O -0.372 6.372 7 Si 0.801 3.199 8 H -0.182 1.182 9 H -0.198 1.198 10 H -0.178 1.178 11 C -0.118 4.118 12 C -0.223 4.223 13 C 0.073 3.927 14 O -0.231 6.231 15 C 0.023 3.977 16 C -0.102 4.102 17 C -0.141 4.141 18 C -0.121 4.121 19 C -0.412 4.412 20 Si 1.315 2.685 21 C -0.568 4.568 22 C -0.570 4.570 23 C -0.570 4.570 24 C -0.121 4.121 25 C -0.140 4.140 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.149 0.851 33 H 0.165 0.835 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.158 0.842 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.690 -1.634 1.265 2.179 hybrid contribution 0.398 0.686 0.009 0.793 sum 1.088 -0.948 1.274 1.925 Atomic orbital electron populations 1.20600 0.89593 1.02957 1.02708 1.19580 0.97468 0.90430 1.05551 1.20886 0.93320 0.97245 0.96377 1.19462 0.94319 0.93873 1.04570 1.24693 1.09931 0.92569 0.91479 1.86460 1.71753 1.36316 1.42711 0.85326 0.74049 0.80522 0.79970 1.18218 1.19762 1.17763 1.20953 0.99941 0.91919 0.99029 1.21341 0.92784 0.99895 1.08257 1.19012 0.90802 0.85782 0.97103 1.86136 1.36278 1.12247 1.88470 1.21752 0.92495 0.80313 1.03091 1.19610 1.00176 0.96082 0.94378 1.21371 0.98093 0.97100 0.97517 1.21389 0.96210 0.95230 0.99284 1.28079 1.07107 1.12267 0.93776 0.77160 0.63577 0.61700 0.66083 1.26271 1.09732 1.16373 1.04440 1.26280 1.10212 1.04667 1.15799 1.26289 1.10301 1.04653 1.15767 1.21398 0.96167 0.95190 0.99326 1.21374 0.98059 0.97081 0.97442 0.90831 0.90443 0.92069 0.83955 0.88724 0.75222 0.85068 0.83503 0.90027 0.90284 0.85657 0.84290 0.91349 0.90611 0.91384 0.91400 0.90590 0.90880 0.90934 0.90590 0.91415 0.84205 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 9.79 71.23 0.70 0.27 16 2 C -0.13 -0.91 5.89 -19.77 -0.12 -1.03 16 3 C -0.06 -0.34 9.26 22.26 0.21 -0.14 16 4 C -0.12 -0.62 5.42 -19.85 -0.11 -0.73 16 5 C -0.08 -0.02 2.81 71.23 0.20 0.18 16 6 O -0.56 -0.60 12.74 -148.98 -1.90 -2.50 16 7 Si 0.98 -0.35 25.07 68.60 1.72 1.37 16 8 H -0.26 -0.16 7.11 99.48 0.71 0.54 16 9 H -0.27 -0.96 7.11 99.48 0.71 -0.25 16 10 H -0.25 0.27 7.11 99.48 0.71 0.98 16 11 C -0.10 -0.50 8.66 22.26 0.19 -0.31 16 12 C -0.20 -1.03 9.04 22.37 0.20 -0.83 16 13 C 0.12 0.88 6.66 22.51 0.15 1.03 16 14 O -0.32 -2.40 9.17 -92.35 -0.85 -3.25 16 15 C 0.10 0.29 4.86 71.23 0.35 0.63 16 16 C -0.10 -0.45 5.51 -19.87 -0.11 -0.56 16 17 C -0.12 -0.46 9.70 22.27 0.22 -0.24 16 18 C -0.10 -0.16 9.29 22.27 0.21 0.05 16 19 C -0.37 -0.03 4.59 22.27 0.10 0.07 16 20 Si 1.13 -6.02 12.32 68.60 0.85 -5.17 16 21 C -0.46 1.63 8.65 113.37 0.98 2.61 16 22 C -0.46 1.81 8.53 113.37 0.97 2.77 16 23 C -0.46 1.74 8.53 113.37 0.97 2.71 16 24 C -0.10 -0.14 9.29 22.27 0.21 0.07 16 25 C -0.12 -0.42 9.70 22.27 0.22 -0.20 16 26 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.08 0.13 8.09 -2.39 -0.02 0.11 16 28 H 0.06 0.37 7.53 -2.39 -0.02 0.36 16 29 H 0.14 0.40 8.06 -2.91 -0.02 0.37 16 30 H 0.09 -0.37 7.96 -2.39 -0.02 -0.39 16 31 H 0.40 -3.26 8.74 -74.06 -0.65 -3.91 16 32 H 0.13 0.25 4.87 -2.91 -0.01 0.24 16 33 H 0.15 0.09 6.30 -2.91 -0.02 0.07 16 34 H 0.08 0.02 7.61 -2.39 -0.02 0.00 16 35 H 0.08 0.06 7.60 -2.39 -0.02 0.04 16 36 H 0.13 0.20 8.06 -2.91 -0.02 0.17 16 37 H 0.14 -0.37 7.43 -2.91 -0.02 -0.39 16 38 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 39 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 40 H 0.07 -0.20 7.96 -2.39 -0.02 -0.21 16 41 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 42 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 43 H 0.07 -0.32 7.69 -2.38 -0.02 -0.34 16 44 H 0.07 -0.30 7.69 -2.39 -0.02 -0.32 16 45 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 46 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 47 H 0.14 -0.43 7.43 -2.91 -0.02 -0.45 16 48 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 Total: 0.00 -14.32 393.82 6.39 -7.93 By element: Atomic # 1 Polarization: -5.80 SS G_CDS: 1.05 Total: -4.76 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.52 Total: 6.36 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -2.74 Total: -5.74 kcal Atomic # 14 Polarization: -6.36 SS G_CDS: 2.56 Total: -3.80 kcal Total: -14.32 6.39 -7.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_14925284_9403676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.984 kcal (2) G-P(sol) polarization free energy of solvation -14.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds