Wall clock time and date at job start Mon Mar 8 2021 07:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.46515 * 2 1 4 4 C 1.50691 * 109.47063 * 119.99691 * 2 1 3 5 5 C 1.38496 * 120.00873 * 304.85416 * 4 2 1 6 6 O 1.36511 * 131.47762 * 359.97438 * 5 4 2 7 7 C 1.43978 * 105.49559 * 162.72650 * 6 5 4 8 8 O 1.43980 * 103.74994 * 27.15828 * 7 6 5 9 9 C 1.36599 * 105.47087 * 332.85337 * 8 7 6 10 10 C 1.38485 * 131.46703 * 197.29796 * 9 8 7 11 11 C 1.38258 * 120.10118 * 179.97438 * 10 9 8 12 12 C 1.38659 * 120.08221 * 359.79992 * 11 10 9 13 13 O 1.35978 * 119.98838 * 180.25951 * 12 11 10 14 14 C 1.42896 * 116.99934 * 0.19173 * 13 12 11 15 15 C 1.53005 * 109.47103 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.47142 * 55.00504 * 15 14 13 17 17 C 1.53002 * 109.46793 * 175.00532 * 15 14 13 18 18 C 1.53005 * 109.46793 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47235 * 300.00133 * 18 17 15 20 20 H 1.09005 * 109.46453 * 299.99720 * 19 18 17 21 21 O 1.42899 * 109.47082 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47243 * 59.99552 * 19 18 17 23 23 C 1.52996 * 109.47248 * 300.00485 * 22 19 18 24 24 H 0.96705 * 113.99448 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47447 * 240.00156 * 2 1 3 26 26 H 1.48499 * 110.00320 * 54.65517 * 3 2 1 27 27 H 1.48501 * 109.99670 * 175.97623 * 3 2 1 28 28 H 1.08998 * 110.57094 * 268.58508 * 7 6 5 29 29 H 1.09000 * 110.56586 * 145.72794 * 7 6 5 30 30 H 1.08010 * 119.95217 * 359.97438 * 10 9 8 31 31 H 1.07997 * 119.96335 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47761 * 300.00730 * 14 13 12 33 33 H 1.08998 * 109.47068 * 60.00443 * 14 13 12 34 34 H 1.08991 * 109.47139 * 299.99783 * 17 15 14 35 35 H 1.08995 * 109.47299 * 60.00069 * 17 15 14 36 36 H 1.09004 * 109.46940 * 59.99912 * 18 17 15 37 37 H 1.08995 * 109.46941 * 179.97438 * 18 17 15 38 38 H 0.96705 * 113.99724 * 179.97438 * 21 19 18 39 39 H 1.09004 * 109.46968 * 60.00200 * 22 19 18 40 40 H 1.09000 * 109.47181 * 180.02562 * 22 19 18 41 41 H 1.08995 * 109.47105 * 299.99693 * 23 22 19 42 42 H 1.09007 * 109.47130 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7566 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.5160 -0.2987 2.4859 6 8 0.6744 0.7026 2.8766 7 6 0.3102 0.3911 4.2343 8 8 1.4317 -0.3675 4.7240 9 6 1.9820 -0.9571 3.6215 10 6 2.8586 -2.0213 3.4920 11 6 3.2712 -2.4311 2.2377 12 6 2.8051 -1.7802 1.1056 13 8 3.2080 -2.1882 -0.1274 14 6 4.1088 -3.2961 -0.1818 15 6 4.4472 -3.6071 -1.6412 16 1 4.8330 -2.7092 -2.1239 17 6 5.5060 -4.7103 -1.6952 18 6 5.8449 -5.0208 -3.1546 19 6 4.5831 -5.4886 -3.8828 20 1 4.1972 -6.3867 -3.4004 21 8 4.8998 -5.7792 -5.2456 22 6 3.5244 -4.3855 -3.8286 23 6 3.1856 -4.0750 -2.3693 24 1 -0.3933 -0.8835 0.0004 25 1 1.7924 -0.5138 -0.8900 26 1 1.4580 2.5045 1.1382 27 1 3.5315 1.7715 0.0979 28 1 -0.5988 -0.2098 4.2587 29 1 0.1824 1.3043 4.8156 30 1 3.2206 -2.5320 4.3722 31 1 3.9552 -3.2611 2.1393 32 1 5.0228 -3.0483 0.3579 33 1 3.6412 -4.1674 0.2767 34 1 6.4049 -4.3768 -1.1769 35 1 5.1202 -5.6081 -1.2125 36 1 6.2309 -4.1227 -3.6370 37 1 6.5994 -5.8064 -3.1931 38 1 4.1451 -6.0825 -5.7687 39 1 3.9104 -3.4874 -4.3109 40 1 2.6254 -4.7189 -4.3469 41 1 2.7996 -4.9730 -1.8869 42 1 2.4315 -3.2887 -2.3307 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_15096582_16737256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:02 Heat of formation + Delta-G solvation = -162.941736 kcal Electronic energy + Delta-G solvation = -26383.252818 eV Core-core repulsion = 22488.911657 eV Total energy + Delta-G solvation = -3894.341161 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.25199 -41.23187 -40.02309 -38.26157 -37.50607 -36.92461 -36.58264 -32.72149 -31.95583 -31.77762 -30.24162 -26.87402 -26.83588 -26.71994 -23.98740 -23.71691 -22.96574 -22.19503 -21.00640 -19.72511 -18.98815 -18.75380 -18.26061 -18.02447 -17.58783 -17.24312 -16.62329 -16.53344 -16.27158 -15.75290 -15.57411 -15.44390 -15.20952 -14.89704 -14.80728 -14.26298 -14.22260 -13.90743 -13.88807 -13.74428 -13.59239 -13.34930 -13.26225 -12.90261 -12.69511 -12.35058 -12.20729 -11.96555 -11.77507 -11.77231 -11.38665 -11.29759 -11.20146 -11.04550 -10.79389 -9.71879 -8.87983 -4.77573 -0.07894 0.07936 1.46454 1.52214 1.80063 2.05183 2.22939 2.41592 2.54490 3.08214 3.25300 3.47751 3.56704 3.57962 3.62819 3.67947 3.77898 3.86939 3.93128 3.96307 4.00139 4.04668 4.14465 4.19925 4.21400 4.27167 4.32604 4.35353 4.36352 4.45871 4.66520 4.76610 4.83034 4.88936 4.93037 4.96327 4.98111 5.02877 5.04379 5.06366 5.10349 5.20503 5.30535 5.95698 6.17768 6.62240 6.65343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.064 4.064 3 Si 0.742 3.258 4 C -0.142 4.142 5 C 0.091 3.909 6 O -0.290 6.290 7 C 0.210 3.790 8 O -0.307 6.307 9 C -0.008 4.008 10 C -0.054 4.054 11 C -0.202 4.202 12 C 0.155 3.845 13 O -0.303 6.303 14 C 0.061 3.939 15 C -0.088 4.088 16 H 0.087 0.913 17 C -0.110 4.110 18 C -0.112 4.112 19 C 0.103 3.897 20 H 0.054 0.946 21 O -0.569 6.569 22 C -0.152 4.152 23 C -0.111 4.111 24 H 0.363 0.637 25 H 0.084 0.916 26 H -0.243 1.243 27 H -0.255 1.255 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.379 0.621 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 -3.121 -0.980 3.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.173 4.173 3 Si 0.639 3.361 4 C -0.144 4.144 5 C 0.046 3.954 6 O -0.205 6.205 7 C 0.099 3.901 8 O -0.223 6.223 9 C -0.052 4.052 10 C -0.072 4.072 11 C -0.221 4.221 12 C 0.109 3.891 13 O -0.216 6.216 14 C -0.014 4.014 15 C -0.107 4.107 16 H 0.105 0.895 17 C -0.147 4.147 18 C -0.149 4.149 19 C 0.044 3.956 20 H 0.072 0.928 21 O -0.375 6.375 22 C -0.190 4.190 23 C -0.149 4.149 24 H 0.209 0.791 25 H 0.102 0.898 26 H -0.167 1.167 27 H -0.180 1.180 28 H 0.105 0.895 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.572 -1.414 -0.403 1.578 hybrid contribution -0.698 -1.897 1.017 2.263 sum -0.126 -3.311 0.613 3.370 Atomic orbital electron populations 1.86769 1.16904 1.32842 1.97060 1.25015 0.84630 1.13014 0.94597 0.93870 0.78368 0.75260 0.88577 1.18432 1.04456 0.98419 0.93107 1.19156 0.94256 0.88726 0.93288 1.87523 1.61607 1.42099 1.29318 1.25728 0.89266 0.96587 0.78558 1.87403 1.44003 1.62381 1.28554 1.19671 1.02711 0.98409 0.84418 1.19880 0.96049 0.93049 0.98255 1.21004 1.05905 1.04310 0.90848 1.18107 0.93708 0.92678 0.84617 1.86037 1.61591 1.49117 1.24871 1.23017 0.92299 0.87464 0.98605 1.21249 0.96598 0.99750 0.93066 0.89474 1.21474 0.98454 0.98137 0.96673 1.21440 0.96893 1.02436 0.94140 1.21843 0.95042 0.96104 0.82623 0.92765 1.86522 1.39581 1.89149 1.22226 1.22278 0.99175 1.00245 0.97306 1.21516 0.97057 1.01664 0.94624 0.79069 0.89789 1.16733 1.17988 0.89505 0.84856 0.84020 0.83654 0.91384 0.91430 0.90713 0.91232 0.90869 0.90790 0.77344 0.90830 0.91460 0.91756 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.21 12.45 -35.23 -0.44 -1.65 16 2 C -0.06 -0.14 2.70 36.00 0.10 -0.04 16 3 Si 0.74 1.71 32.09 -169.99 -5.46 -3.75 16 4 C -0.14 -0.43 4.46 -104.36 -0.47 -0.90 16 5 C 0.09 0.37 5.94 -39.09 -0.23 0.14 16 6 O -0.29 -1.27 10.34 -45.72 -0.47 -1.74 16 7 C 0.21 0.24 8.89 101.05 0.90 1.14 16 8 O -0.31 -1.07 11.41 -46.01 -0.52 -1.59 16 9 C -0.01 -0.03 7.15 -39.10 -0.28 -0.31 16 10 C -0.05 -0.07 10.05 -39.48 -0.40 -0.47 16 11 C -0.20 -0.07 9.03 -39.42 -0.36 -0.43 16 12 C 0.16 0.25 6.66 -39.26 -0.26 -0.01 16 13 O -0.30 -0.14 8.44 -19.67 -0.17 -0.30 16 14 C 0.06 -0.12 4.12 37.16 0.15 0.03 16 15 C -0.09 0.20 2.43 -90.62 -0.22 -0.02 16 16 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 17 C -0.11 0.30 5.20 -26.73 -0.14 0.16 16 18 C -0.11 0.12 5.57 -26.73 -0.15 -0.02 16 19 C 0.10 -0.10 3.47 -26.73 -0.09 -0.19 16 20 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 21 O -0.57 -0.28 13.32 -35.23 -0.47 -0.75 16 22 C -0.15 0.26 5.55 -26.73 -0.15 0.11 16 23 C -0.11 0.22 5.10 -26.73 -0.14 0.09 16 24 H 0.36 -0.22 9.08 45.56 0.41 0.19 16 25 H 0.08 0.08 6.82 -51.93 -0.35 -0.28 16 26 H -0.24 -1.34 6.85 56.52 0.39 -0.95 16 27 H -0.26 -1.04 7.11 56.52 0.40 -0.64 16 28 H 0.09 -0.08 8.14 -51.93 -0.42 -0.51 16 29 H 0.13 -0.20 8.14 -51.93 -0.42 -0.63 16 30 H 0.14 -0.11 8.06 -52.48 -0.42 -0.53 16 31 H 0.15 -0.34 6.28 -52.49 -0.33 -0.67 16 32 H 0.07 -0.19 7.65 -51.93 -0.40 -0.59 16 33 H 0.07 -0.20 7.67 -51.93 -0.40 -0.60 16 34 H 0.07 -0.24 8.14 -51.93 -0.42 -0.67 16 35 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 36 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.38 -1.25 9.08 45.56 0.41 -0.83 16 39 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 40 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 41 H 0.06 -0.15 8.14 -51.93 -0.42 -0.57 16 42 H 0.07 -0.09 7.82 -51.92 -0.41 -0.50 16 LS Contribution 340.35 15.07 5.13 5.13 Total: 0.00 -7.35 340.35 -9.47 -16.82 By element: Atomic # 1 Polarization: -6.10 SS G_CDS: -5.34 Total: -11.45 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.73 Total: -0.72 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -2.07 Total: -6.03 kcal Atomic # 14 Polarization: 1.71 SS G_CDS: -5.46 Total: -3.75 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -7.35 -9.47 -16.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_15096582_16737256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.117 kcal (2) G-P(sol) polarization free energy of solvation -7.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds