Wall clock time and date at job start Mon Mar 8 2021 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.46515 * 2 1 4 4 C 1.50691 * 109.47063 * 119.99691 * 2 1 3 5 5 C 1.38496 * 120.00873 * 304.85416 * 4 2 1 6 6 O 1.36511 * 131.47762 * 359.97438 * 5 4 2 7 7 C 1.43978 * 105.49559 * 162.72650 * 6 5 4 8 8 O 1.43980 * 103.74994 * 27.15828 * 7 6 5 9 9 C 1.36599 * 105.47087 * 332.85337 * 8 7 6 10 10 C 1.38485 * 131.46703 * 197.29796 * 9 8 7 11 11 C 1.38258 * 120.10118 * 179.97438 * 10 9 8 12 12 C 1.38659 * 120.08221 * 359.79992 * 11 10 9 13 13 O 1.35978 * 119.98838 * 180.25951 * 12 11 10 14 14 C 1.42896 * 116.99934 * 0.19173 * 13 12 11 15 15 C 1.53005 * 109.47103 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.47142 * 55.00504 * 15 14 13 17 17 C 1.53002 * 109.46793 * 175.00532 * 15 14 13 18 18 C 1.53005 * 109.46793 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47235 * 300.00133 * 18 17 15 20 20 H 1.09005 * 109.46453 * 299.99720 * 19 18 17 21 21 O 1.42899 * 109.47082 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47243 * 59.99552 * 19 18 17 23 23 C 1.52996 * 109.47248 * 300.00485 * 22 19 18 24 24 H 0.96705 * 113.99448 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47447 * 240.00156 * 2 1 3 26 26 H 1.48499 * 110.00320 * 54.65517 * 3 2 1 27 27 H 1.48501 * 109.99670 * 175.97623 * 3 2 1 28 28 H 1.08998 * 110.57094 * 268.58508 * 7 6 5 29 29 H 1.09000 * 110.56586 * 145.72794 * 7 6 5 30 30 H 1.08010 * 119.95217 * 359.97438 * 10 9 8 31 31 H 1.07997 * 119.96335 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47761 * 300.00730 * 14 13 12 33 33 H 1.08998 * 109.47068 * 60.00443 * 14 13 12 34 34 H 1.08991 * 109.47139 * 299.99783 * 17 15 14 35 35 H 1.08995 * 109.47299 * 60.00069 * 17 15 14 36 36 H 1.09004 * 109.46940 * 59.99912 * 18 17 15 37 37 H 1.08995 * 109.46941 * 179.97438 * 18 17 15 38 38 H 0.96705 * 113.99724 * 179.97438 * 21 19 18 39 39 H 1.09004 * 109.46968 * 60.00200 * 22 19 18 40 40 H 1.09000 * 109.47181 * 180.02562 * 22 19 18 41 41 H 1.08995 * 109.47105 * 299.99693 * 23 22 19 42 42 H 1.09007 * 109.47130 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7566 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.5160 -0.2987 2.4859 6 8 0.6744 0.7026 2.8766 7 6 0.3102 0.3911 4.2343 8 8 1.4317 -0.3675 4.7240 9 6 1.9820 -0.9571 3.6215 10 6 2.8586 -2.0213 3.4920 11 6 3.2712 -2.4311 2.2377 12 6 2.8051 -1.7802 1.1056 13 8 3.2080 -2.1882 -0.1274 14 6 4.1088 -3.2961 -0.1818 15 6 4.4472 -3.6071 -1.6412 16 1 4.8330 -2.7092 -2.1239 17 6 5.5060 -4.7103 -1.6952 18 6 5.8449 -5.0208 -3.1546 19 6 4.5831 -5.4886 -3.8828 20 1 4.1972 -6.3867 -3.4004 21 8 4.8998 -5.7792 -5.2456 22 6 3.5244 -4.3855 -3.8286 23 6 3.1856 -4.0750 -2.3693 24 1 -0.3933 -0.8835 0.0004 25 1 1.7924 -0.5138 -0.8900 26 1 1.4580 2.5045 1.1382 27 1 3.5315 1.7715 0.0979 28 1 -0.5988 -0.2098 4.2587 29 1 0.1824 1.3043 4.8156 30 1 3.2206 -2.5320 4.3722 31 1 3.9552 -3.2611 2.1393 32 1 5.0228 -3.0483 0.3579 33 1 3.6412 -4.1674 0.2767 34 1 6.4049 -4.3768 -1.1769 35 1 5.1202 -5.6081 -1.2125 36 1 6.2309 -4.1227 -3.6370 37 1 6.5994 -5.8064 -3.1931 38 1 4.1451 -6.0825 -5.7687 39 1 3.9104 -3.4874 -4.3109 40 1 2.6254 -4.7189 -4.3469 41 1 2.7996 -4.9730 -1.8869 42 1 2.4315 -3.2887 -2.3307 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_15096582_16737256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:01 Heat of formation + Delta-G solvation = -162.622488 kcal Electronic energy + Delta-G solvation = -26383.238974 eV Core-core repulsion = 22488.911657 eV Total energy + Delta-G solvation = -3894.327317 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.36742 -41.21463 -39.93567 -38.33029 -37.60895 -37.03921 -36.54313 -32.76338 -31.79979 -31.73314 -30.29633 -26.93076 -26.82416 -26.75453 -23.92658 -23.67031 -23.04726 -22.12742 -20.84837 -19.75425 -19.10591 -18.84655 -18.19928 -18.08181 -17.68097 -17.17202 -16.68145 -16.51808 -16.24680 -15.89566 -15.54972 -15.46060 -15.27340 -14.85915 -14.72921 -14.33198 -14.23683 -14.08005 -13.96607 -13.77569 -13.57918 -13.22904 -13.15447 -12.81725 -12.71084 -12.35971 -12.21827 -12.06906 -11.65074 -11.63654 -11.42398 -11.33471 -11.17638 -11.05210 -10.69042 -9.84422 -8.97653 -5.00115 -0.18499 -0.02817 1.31267 1.41631 1.57234 1.98008 2.04310 2.31581 2.51248 3.15351 3.25119 3.55439 3.62656 3.66732 3.70695 3.72430 3.79130 3.87769 3.92639 4.06551 4.10214 4.14325 4.18225 4.28351 4.31093 4.37994 4.38737 4.51325 4.54106 4.59897 4.70098 4.81521 4.83644 4.92168 4.97180 5.00820 5.06591 5.09615 5.12407 5.18332 5.21311 5.35385 5.46420 5.86198 6.18229 6.62490 6.87286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.063 4.063 3 Si 0.798 3.202 4 C -0.161 4.161 5 C 0.069 3.931 6 O -0.316 6.316 7 C 0.203 3.797 8 O -0.323 6.323 9 C -0.031 4.031 10 C -0.053 4.053 11 C -0.194 4.194 12 C 0.155 3.845 13 O -0.309 6.309 14 C 0.055 3.945 15 C -0.084 4.084 16 H 0.076 0.924 17 C -0.103 4.103 18 C -0.114 4.114 19 C 0.100 3.900 20 H 0.063 0.937 21 O -0.592 6.592 22 C -0.147 4.147 23 C -0.108 4.108 24 H 0.375 0.625 25 H 0.098 0.902 26 H -0.292 1.292 27 H -0.280 1.280 28 H 0.105 0.895 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.177 0.823 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.393 0.607 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -4.691 -0.798 4.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.172 4.172 3 Si 0.701 3.299 4 C -0.163 4.163 5 C 0.023 3.977 6 O -0.232 6.232 7 C 0.092 3.908 8 O -0.240 6.240 9 C -0.075 4.075 10 C -0.072 4.072 11 C -0.212 4.212 12 C 0.108 3.892 13 O -0.223 6.223 14 C -0.019 4.019 15 C -0.103 4.103 16 H 0.095 0.905 17 C -0.141 4.141 18 C -0.152 4.152 19 C 0.041 3.959 20 H 0.081 0.919 21 O -0.400 6.400 22 C -0.185 4.185 23 C -0.146 4.146 24 H 0.224 0.776 25 H 0.116 0.884 26 H -0.219 1.219 27 H -0.207 1.207 28 H 0.123 0.877 29 H 0.172 0.828 30 H 0.181 0.819 31 H 0.194 0.806 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.242 0.758 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.839 -3.003 -0.248 3.128 hybrid contribution -0.762 -1.436 0.965 1.890 sum 0.077 -4.438 0.717 4.497 Atomic orbital electron populations 1.86712 1.17014 1.34128 1.97087 1.24960 0.84705 1.12465 0.95050 0.93322 0.75718 0.74242 0.86583 1.18642 1.05326 0.99296 0.92988 1.19417 0.94990 0.89194 0.94050 1.87469 1.62054 1.42890 1.30757 1.26096 0.89253 0.97763 0.77663 1.87350 1.44802 1.62805 1.29045 1.20014 1.03794 0.99429 0.84220 1.20259 0.95065 0.92310 0.99531 1.21359 1.05453 1.04487 0.89912 1.18200 0.93215 0.92274 0.85469 1.86035 1.61959 1.49955 1.24345 1.23225 0.92553 0.87322 0.98808 1.21197 0.96557 0.99496 0.93019 0.90543 1.21430 0.98663 0.98383 0.95576 1.21472 0.96820 1.01647 0.95259 1.21936 0.95218 0.96587 0.82122 0.91937 1.86484 1.41038 1.89356 1.23165 1.22218 0.99160 0.99482 0.97668 1.21493 0.96995 1.01746 0.94356 0.77608 0.88387 1.21863 1.20697 0.87701 0.82828 0.81935 0.80571 0.90173 0.89738 0.89891 0.90054 0.92132 0.91334 0.75773 0.92094 0.90843 0.90929 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.78 12.45 -148.98 -1.86 -4.64 16 2 C -0.06 -0.30 2.70 71.23 0.19 -0.11 16 3 Si 0.80 4.94 32.09 68.60 2.20 7.14 16 4 C -0.16 -1.05 4.46 -19.70 -0.09 -1.14 16 5 C 0.07 0.64 5.94 22.59 0.13 0.78 16 6 O -0.32 -3.33 10.34 -76.18 -0.79 -4.12 16 7 C 0.20 0.67 8.89 113.37 1.01 1.68 16 8 O -0.32 -2.53 11.41 -77.22 -0.88 -3.41 16 9 C -0.03 -0.23 7.15 22.58 0.16 -0.07 16 10 C -0.05 -0.09 10.05 22.33 0.22 0.13 16 11 C -0.19 0.19 9.03 22.38 0.20 0.39 16 12 C 0.16 0.38 6.66 22.48 0.15 0.53 16 13 O -0.31 0.08 8.44 -93.30 -0.79 -0.71 16 14 C 0.06 -0.33 4.12 71.98 0.30 -0.04 16 15 C -0.08 0.47 2.43 -10.79 -0.03 0.44 16 16 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 17 C -0.10 0.70 5.20 30.60 0.16 0.86 16 18 C -0.11 0.28 5.57 30.60 0.17 0.45 16 19 C 0.10 -0.23 3.47 30.59 0.11 -0.12 16 20 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 21 O -0.59 -0.66 13.32 -148.98 -1.98 -2.65 16 22 C -0.15 0.54 5.55 30.59 0.17 0.71 16 23 C -0.11 0.54 5.10 30.59 0.16 0.69 16 24 H 0.38 -0.36 9.08 -74.05 -0.67 -1.03 16 25 H 0.10 0.16 6.82 -2.39 -0.02 0.15 16 26 H -0.29 -4.13 6.85 99.48 0.68 -3.45 16 27 H -0.28 -2.78 7.11 99.48 0.71 -2.07 16 28 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.15 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.16 -0.52 8.06 -2.91 -0.02 -0.54 16 31 H 0.18 -1.38 6.28 -2.91 -0.02 -1.40 16 32 H 0.08 -0.65 7.65 -2.39 -0.02 -0.67 16 33 H 0.08 -0.77 7.67 -2.39 -0.02 -0.78 16 34 H 0.08 -0.68 8.14 -2.39 -0.02 -0.69 16 35 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 37 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.39 -2.56 9.08 -74.05 -0.67 -3.23 16 39 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 40 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.07 -0.21 7.82 -2.38 -0.02 -0.23 16 Total: 0.00 -18.64 340.35 -1.36 -20.00 By element: Atomic # 1 Polarization: -16.52 SS G_CDS: -0.28 Total: -16.81 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 3.02 Total: 5.18 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -6.30 Total: -15.52 kcal Atomic # 14 Polarization: 4.94 SS G_CDS: 2.20 Total: 7.14 kcal Total: -18.64 -1.36 -20.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_15096582_16737256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.621 kcal (2) G-P(sol) polarization free energy of solvation -18.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds