Wall clock time and date at job start Mon Mar 8 2021 10:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.38710 * 120.01498 * 284.72494 * 4 2 1 6 6 O 1.35907 * 120.04541 * 359.97438 * 5 4 2 7 7 C 1.42902 * 116.99807 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46718 * 179.97438 * 7 6 5 9 9 H 1.08993 * 109.47142 * 54.99913 * 8 7 6 10 10 C 1.53003 * 109.46958 * 174.99911 * 8 7 6 11 11 C 1.52997 * 109.47096 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47624 * 300.00285 * 11 10 8 13 13 H 1.09005 * 109.46891 * 300.00058 * 12 11 10 14 14 O 1.42894 * 109.47442 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.47117 * 59.99727 * 12 11 10 16 16 C 1.52999 * 109.46955 * 294.99634 * 8 7 6 17 17 C 1.38738 * 119.91010 * 179.73986 * 5 4 2 18 18 C 1.38206 * 119.94238 * 0.53894 * 17 5 4 19 19 Br 1.89098 * 119.98713 * 179.72207 * 18 17 5 20 20 C 1.38435 * 120.02717 * 359.73247 * 18 17 5 21 21 I 2.09501 * 119.95368 * 179.97438 * 20 18 17 22 22 C 1.38172 * 120.01329 * 104.99890 * 4 2 1 23 23 H 0.96701 * 113.99881 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 25 25 H 1.48494 * 109.99914 * 58.68020 * 3 2 1 26 26 H 1.48493 * 110.00101 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47076 * 299.99235 * 7 6 5 28 28 H 1.08994 * 109.47560 * 59.99873 * 7 6 5 29 29 H 1.08997 * 109.46950 * 300.00190 * 10 8 7 30 30 H 1.09005 * 109.46970 * 59.99822 * 10 8 7 31 31 H 1.09005 * 109.47035 * 60.00256 * 11 10 8 32 32 H 1.08995 * 109.47443 * 179.97438 * 11 10 8 33 33 H 0.96705 * 114.00316 * 179.97438 * 14 12 11 34 34 H 1.08993 * 109.47192 * 60.00169 * 15 12 11 35 35 H 1.09003 * 109.47206 * 180.02562 * 15 12 11 36 36 H 1.08993 * 109.47423 * 300.00107 * 16 8 7 37 37 H 1.09002 * 109.46942 * 60.00405 * 16 8 7 38 38 H 1.07999 * 120.02940 * 180.24921 * 17 5 4 39 39 H 1.07996 * 119.97313 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.8747 -2.0944 -1.3043 6 8 1.3669 -2.8110 -0.2672 7 6 1.3392 -4.2323 -0.4127 8 6 0.7392 -4.8621 0.8460 9 1 -0.2408 -4.4258 1.0389 10 6 0.5941 -6.3715 0.6415 11 6 -0.0053 -7.0014 1.9004 12 6 0.9158 -6.7345 3.0925 13 1 1.8959 -7.1708 2.8992 14 8 0.3557 -7.3223 4.2683 15 6 1.0609 -5.2251 3.2970 16 6 1.6599 -4.5952 2.0384 17 6 2.3328 -2.7459 -2.4403 18 6 2.8546 -2.0155 -3.4912 19 35 3.4865 -2.9026 -5.0370 20 6 2.9150 -0.6347 -3.4126 21 53 3.7072 0.4701 -5.0066 22 6 2.4536 0.0162 -2.2832 23 1 -0.3933 -0.8834 0.0004 24 1 1.7923 -0.5139 0.8900 25 1 1.5355 2.4771 1.1921 26 1 3.5349 1.7701 -0.0006 27 1 0.7307 -4.4972 -1.2773 28 1 2.3542 -4.6028 -0.5554 29 1 -0.0618 -6.5616 -0.2080 30 1 1.5742 -6.8079 0.4486 31 1 -0.9853 -6.5651 2.0937 32 1 -0.1091 -8.0766 1.7546 33 1 0.8882 -7.1925 5.0650 34 1 0.0809 -4.7888 3.4902 35 1 1.7175 -5.0350 4.1461 36 1 2.6399 -5.0316 1.8456 37 1 1.7633 -3.5199 2.1841 38 1 2.2859 -3.8231 -2.5015 39 1 2.5021 1.0935 -2.2238 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_15786360_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:42:38 Heat of formation + Delta-G solvation = -92.832879 kcal Electronic energy + Delta-G solvation = -24221.090117 eV Core-core repulsion = 20421.246579 eV Total energy + Delta-G solvation = -3799.843537 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 468.947 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94562 -40.38126 -39.05179 -37.75648 -36.84015 -34.04211 -33.03205 -32.02751 -31.91395 -31.19813 -28.79020 -27.01358 -26.47887 -24.01870 -23.88306 -22.42161 -22.20371 -21.05199 -19.44513 -18.35012 -18.30697 -17.83217 -17.43849 -16.68800 -16.48347 -15.86626 -15.70177 -15.61449 -15.47578 -15.13730 -14.94773 -14.61737 -14.40352 -14.02004 -13.88226 -13.49535 -13.40539 -13.02743 -12.92495 -12.70649 -12.43070 -12.27321 -12.15807 -11.90545 -11.86722 -11.84186 -11.77307 -11.42941 -11.29241 -11.21461 -11.11919 -10.84899 -10.55086 -10.16007 -9.50084 -4.97180 -0.42494 -0.21043 -0.13627 0.38210 1.28494 1.56841 1.71849 1.93508 2.05433 3.01760 3.27741 3.32661 3.39328 3.48997 3.52372 3.64717 3.77789 3.85027 3.89930 3.94224 4.06316 4.11975 4.13472 4.15059 4.15973 4.24407 4.28219 4.36965 4.48476 4.58905 4.60292 4.73835 4.78611 4.86217 4.89630 4.97331 4.97850 5.06814 5.14470 5.23868 5.91179 6.47499 6.60898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.068 4.068 3 Si 0.732 3.268 4 C -0.129 4.129 5 C 0.167 3.833 6 O -0.304 6.304 7 C 0.058 3.942 8 C -0.087 4.087 9 H 0.087 0.913 10 C -0.110 4.110 11 C -0.111 4.111 12 C 0.103 3.897 13 H 0.055 0.945 14 O -0.569 6.569 15 C -0.152 4.152 16 C -0.112 4.112 17 C -0.177 4.177 18 C -0.021 4.021 19 Br -0.015 7.015 20 C -0.117 4.117 21 I -0.005 7.005 22 C -0.033 4.033 23 H 0.367 0.633 24 H 0.080 0.920 25 H -0.248 1.248 26 H -0.245 1.245 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.379 0.621 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.148 0.852 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 -1.453 0.494 1.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.177 4.177 3 Si 0.630 3.370 4 C -0.132 4.132 5 C 0.119 3.881 6 O -0.217 6.217 7 C -0.017 4.017 8 C -0.105 4.105 9 H 0.106 0.894 10 C -0.148 4.148 11 C -0.149 4.149 12 C 0.044 3.956 13 H 0.073 0.927 14 O -0.374 6.374 15 C -0.190 4.190 16 C -0.149 4.149 17 C -0.199 4.199 18 C -0.104 4.104 19 Br 0.071 6.929 20 C -0.259 4.259 21 I 0.144 6.856 22 C -0.053 4.053 23 H 0.215 0.785 24 H 0.097 0.903 25 H -0.173 1.173 26 H -0.169 1.169 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.227 0.773 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.166 0.834 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.380 0.089 -1.010 1.713 hybrid contribution -0.075 -2.205 2.084 3.036 sum 1.305 -2.116 1.074 2.709 Atomic orbital electron populations 1.86757 1.16448 1.33322 1.97071 1.25332 0.85153 1.12829 0.94401 0.93075 0.79214 0.76225 0.88487 1.19857 1.03948 0.90807 0.98575 1.18726 0.92219 0.90601 0.86547 1.86067 1.77048 1.20407 1.38137 1.23087 1.01713 0.77223 0.99660 1.21243 1.00586 0.95562 0.93121 0.89429 1.21479 1.02063 0.93148 0.98083 1.21435 0.99303 1.01737 0.92421 1.21838 0.96194 0.91661 0.85901 0.92729 1.86521 1.52811 1.79202 1.18911 1.22273 1.02225 0.96301 0.98218 1.21513 0.98381 1.01520 0.93503 1.21212 1.04608 1.00988 0.93052 1.21610 1.01045 0.93155 0.94624 1.96867 1.86348 1.77238 1.32442 1.24364 1.07990 0.93809 0.99743 1.96976 1.83232 1.68321 1.37039 1.20741 0.94528 0.99646 0.90407 0.78481 0.90277 1.17257 1.16945 0.91101 0.91319 0.90608 0.91197 0.90858 0.90701 0.77318 0.90858 0.91476 0.91711 0.90868 0.83417 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.46 12.65 -35.23 -0.45 -0.90 16 2 C -0.07 -0.01 2.33 36.01 0.08 0.07 16 3 Si 0.73 -0.13 30.17 -169.99 -5.13 -5.25 16 4 C -0.13 -0.04 5.28 -104.47 -0.55 -0.59 16 5 C 0.17 -0.02 6.62 -39.22 -0.26 -0.28 16 6 O -0.30 0.33 8.60 -19.45 -0.17 0.16 16 7 C 0.06 -0.17 4.12 37.16 0.15 -0.01 16 8 C -0.09 0.25 2.43 -90.62 -0.22 0.03 16 9 H 0.09 -0.20 8.14 -51.93 -0.42 -0.63 16 10 C -0.11 0.34 5.20 -26.73 -0.14 0.20 16 11 C -0.11 0.15 5.57 -26.73 -0.15 0.00 16 12 C 0.10 -0.11 3.47 -26.73 -0.09 -0.20 16 13 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 14 O -0.57 -0.25 13.32 -35.23 -0.47 -0.72 16 15 C -0.15 0.27 5.54 -26.75 -0.15 0.13 16 16 C -0.11 0.25 5.10 -26.75 -0.14 0.11 16 17 C -0.18 0.06 8.78 -39.41 -0.35 -0.29 16 18 C -0.02 -0.02 6.22 -39.52 -0.25 -0.26 16 19 Br -0.02 -0.01 31.96 -68.01 -2.17 -2.19 16 20 C -0.12 -0.10 6.20 -39.49 -0.25 -0.35 16 21 I 0.00 0.00 38.57 -73.02 -2.82 -2.82 16 22 C -0.03 -0.01 8.37 -39.59 -0.33 -0.34 16 23 H 0.37 -0.43 8.64 45.56 0.39 -0.03 16 24 H 0.08 0.01 7.82 -51.93 -0.41 -0.40 16 25 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 26 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 27 H 0.07 -0.26 7.65 -51.93 -0.40 -0.66 16 28 H 0.07 -0.23 7.67 -51.93 -0.40 -0.63 16 29 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 30 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 31 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.38 -1.25 9.08 45.56 0.41 -0.84 16 34 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 35 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 36 H 0.06 -0.15 8.14 -51.93 -0.42 -0.58 16 37 H 0.07 -0.10 7.82 -51.93 -0.41 -0.51 16 38 H 0.15 -0.30 6.30 -52.49 -0.33 -0.63 16 39 H 0.15 -0.21 5.13 -52.49 -0.27 -0.48 16 LS Contribution 358.10 15.07 5.40 5.40 Total: 0.00 -4.59 358.10 -12.83 -17.43 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: -4.40 Total: -9.32 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.63 Total: -1.78 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: -1.08 Total: -1.46 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: -5.13 Total: -5.25 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.17 Total: -2.19 kcal Atomic # 53 Polarization: 0.00 SS G_CDS: -2.82 Total: -2.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -4.59 -12.83 -17.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_15786360_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.406 kcal (2) G-P(sol) polarization free energy of solvation -4.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds