Wall clock time and date at job start Mon Mar 8 2021 10:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.38710 * 120.01498 * 284.72494 * 4 2 1 6 6 O 1.35907 * 120.04541 * 359.97438 * 5 4 2 7 7 C 1.42902 * 116.99807 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46718 * 179.97438 * 7 6 5 9 9 H 1.08993 * 109.47142 * 54.99913 * 8 7 6 10 10 C 1.53003 * 109.46958 * 174.99911 * 8 7 6 11 11 C 1.52997 * 109.47096 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47624 * 300.00285 * 11 10 8 13 13 H 1.09005 * 109.46891 * 300.00058 * 12 11 10 14 14 O 1.42894 * 109.47442 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.47117 * 59.99727 * 12 11 10 16 16 C 1.52999 * 109.46955 * 294.99634 * 8 7 6 17 17 C 1.38738 * 119.91010 * 179.73986 * 5 4 2 18 18 C 1.38206 * 119.94238 * 0.53894 * 17 5 4 19 19 Br 1.89098 * 119.98713 * 179.72207 * 18 17 5 20 20 C 1.38435 * 120.02717 * 359.73247 * 18 17 5 21 21 I 2.09501 * 119.95368 * 179.97438 * 20 18 17 22 22 C 1.38172 * 120.01329 * 104.99890 * 4 2 1 23 23 H 0.96701 * 113.99881 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 25 25 H 1.48494 * 109.99914 * 58.68020 * 3 2 1 26 26 H 1.48493 * 110.00101 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47076 * 299.99235 * 7 6 5 28 28 H 1.08994 * 109.47560 * 59.99873 * 7 6 5 29 29 H 1.08997 * 109.46950 * 300.00190 * 10 8 7 30 30 H 1.09005 * 109.46970 * 59.99822 * 10 8 7 31 31 H 1.09005 * 109.47035 * 60.00256 * 11 10 8 32 32 H 1.08995 * 109.47443 * 179.97438 * 11 10 8 33 33 H 0.96705 * 114.00316 * 179.97438 * 14 12 11 34 34 H 1.08993 * 109.47192 * 60.00169 * 15 12 11 35 35 H 1.09003 * 109.47206 * 180.02562 * 15 12 11 36 36 H 1.08993 * 109.47423 * 300.00107 * 16 8 7 37 37 H 1.09002 * 109.46942 * 60.00405 * 16 8 7 38 38 H 1.07999 * 120.02940 * 180.24921 * 17 5 4 39 39 H 1.07996 * 119.97313 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.8747 -2.0944 -1.3043 6 8 1.3669 -2.8110 -0.2672 7 6 1.3392 -4.2323 -0.4127 8 6 0.7392 -4.8621 0.8460 9 1 -0.2408 -4.4258 1.0389 10 6 0.5941 -6.3715 0.6415 11 6 -0.0053 -7.0014 1.9004 12 6 0.9158 -6.7345 3.0925 13 1 1.8959 -7.1708 2.8992 14 8 0.3557 -7.3223 4.2683 15 6 1.0609 -5.2251 3.2970 16 6 1.6599 -4.5952 2.0384 17 6 2.3328 -2.7459 -2.4403 18 6 2.8546 -2.0155 -3.4912 19 35 3.4865 -2.9026 -5.0370 20 6 2.9150 -0.6347 -3.4126 21 53 3.7072 0.4701 -5.0066 22 6 2.4536 0.0162 -2.2832 23 1 -0.3933 -0.8834 0.0004 24 1 1.7923 -0.5139 0.8900 25 1 1.5355 2.4771 1.1921 26 1 3.5349 1.7701 -0.0006 27 1 0.7307 -4.4972 -1.2773 28 1 2.3542 -4.6028 -0.5554 29 1 -0.0618 -6.5616 -0.2080 30 1 1.5742 -6.8079 0.4486 31 1 -0.9853 -6.5651 2.0937 32 1 -0.1091 -8.0766 1.7546 33 1 0.8882 -7.1925 5.0650 34 1 0.0809 -4.7888 3.4902 35 1 1.7175 -5.0350 4.1461 36 1 2.6399 -5.0316 1.8456 37 1 1.7633 -3.5199 2.1841 38 1 2.2859 -3.8231 -2.5015 39 1 2.5021 1.0935 -2.2238 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_15786360_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:42:37 Heat of formation + Delta-G solvation = -86.967344 kcal Electronic energy + Delta-G solvation = -24220.835768 eV Core-core repulsion = 20421.246579 eV Total energy + Delta-G solvation = -3799.589189 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 468.947 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87446 -40.25268 -38.97149 -37.77749 -36.75123 -34.03376 -32.99532 -31.86540 -31.79451 -31.19852 -28.77006 -26.88776 -26.45312 -23.89305 -23.77247 -22.37398 -22.09232 -20.88230 -19.36787 -18.35685 -18.23859 -17.77947 -17.29338 -16.62856 -16.39768 -15.80854 -15.60179 -15.49829 -15.45399 -15.10294 -14.86834 -14.53683 -14.31019 -14.08522 -13.77305 -13.39185 -13.23714 -12.91511 -12.83032 -12.69310 -12.30373 -12.24279 -12.12346 -11.90793 -11.83960 -11.69214 -11.64158 -11.42465 -11.23835 -11.15993 -11.07952 -10.74877 -10.57581 -10.14490 -9.47173 -4.98589 -0.41709 -0.17842 -0.14704 0.37803 1.26792 1.54184 1.84443 1.88509 2.07638 3.18992 3.33855 3.36586 3.59877 3.63433 3.67454 3.74511 3.81506 3.98417 4.02020 4.10978 4.13690 4.19354 4.25721 4.30210 4.32454 4.44608 4.45987 4.52977 4.54968 4.62362 4.76951 4.79537 4.94652 5.03386 5.05846 5.10320 5.13749 5.15870 5.29072 5.40456 6.02751 6.54453 6.82043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.070 4.070 3 Si 0.784 3.216 4 C -0.136 4.136 5 C 0.169 3.831 6 O -0.307 6.307 7 C 0.054 3.946 8 C -0.081 4.081 9 H 0.081 0.919 10 C -0.104 4.104 11 C -0.114 4.114 12 C 0.100 3.900 13 H 0.062 0.938 14 O -0.591 6.591 15 C -0.147 4.147 16 C -0.109 4.109 17 C -0.175 4.175 18 C -0.030 4.030 19 Br -0.019 7.019 20 C -0.126 4.126 21 I -0.009 7.009 22 C -0.037 4.037 23 H 0.376 0.624 24 H 0.081 0.919 25 H -0.287 1.287 26 H -0.259 1.259 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.393 0.607 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.165 0.835 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -2.007 0.118 2.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.179 4.179 3 Si 0.685 3.315 4 C -0.139 4.139 5 C 0.120 3.880 6 O -0.220 6.220 7 C -0.020 4.020 8 C -0.100 4.100 9 H 0.099 0.901 10 C -0.141 4.141 11 C -0.151 4.151 12 C 0.042 3.958 13 H 0.079 0.921 14 O -0.400 6.400 15 C -0.185 4.185 16 C -0.147 4.147 17 C -0.197 4.197 18 C -0.113 4.113 19 Br 0.067 6.933 20 C -0.269 4.269 21 I 0.140 6.860 22 C -0.057 4.057 23 H 0.225 0.775 24 H 0.098 0.902 25 H -0.214 1.214 26 H -0.184 1.184 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.242 0.758 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.182 0.818 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.610 -0.480 -1.391 2.181 hybrid contribution -0.171 -2.063 2.287 3.084 sum 1.440 -2.542 0.896 3.056 Atomic orbital electron populations 1.86720 1.16780 1.34239 1.97098 1.25358 0.84973 1.12980 0.94565 0.92413 0.77477 0.74856 0.86729 1.19888 1.04269 0.91204 0.98518 1.18754 0.91905 0.90562 0.86736 1.86073 1.76776 1.21334 1.37846 1.23224 1.02553 0.76271 0.99958 1.21172 1.00100 0.95722 0.92957 0.90065 1.21438 1.02600 0.92683 0.97428 1.21463 0.98958 1.01430 0.93276 1.21932 0.96431 0.91925 0.85561 0.92052 1.86483 1.53899 1.79574 1.20029 1.22210 1.01703 0.95863 0.98749 1.21486 0.98747 1.00928 0.93500 1.21378 1.03978 1.01809 0.92524 1.21713 1.01451 0.93242 0.94862 1.96859 1.86443 1.77199 1.32772 1.24407 1.08567 0.93989 0.99896 1.96960 1.83320 1.68413 1.37319 1.20885 0.94341 1.00287 0.90220 0.77502 0.90199 1.21390 1.18379 0.89883 0.90358 0.89670 0.90323 0.91961 0.91289 0.75784 0.92035 0.91053 0.91165 0.91664 0.81759 0.82324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.90 12.65 -148.98 -1.89 -2.79 16 2 C -0.07 -0.03 2.33 71.24 0.17 0.14 16 3 Si 0.78 0.07 30.17 68.60 2.07 2.14 16 4 C -0.14 -0.03 5.28 -19.77 -0.10 -0.13 16 5 C 0.17 -0.18 6.62 22.50 0.15 -0.03 16 6 O -0.31 0.93 8.60 -92.51 -0.80 0.13 16 7 C 0.05 -0.38 4.12 71.98 0.30 -0.08 16 8 C -0.08 0.52 2.43 -10.79 -0.03 0.49 16 9 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 10 C -0.10 0.73 5.20 30.59 0.16 0.89 16 11 C -0.11 0.30 5.57 30.59 0.17 0.47 16 12 C 0.10 -0.21 3.47 30.59 0.11 -0.10 16 13 H 0.06 -0.22 8.14 -2.38 -0.02 -0.24 16 14 O -0.59 -0.77 13.32 -148.98 -1.98 -2.75 16 15 C -0.15 0.51 5.54 30.58 0.17 0.68 16 16 C -0.11 0.53 5.10 30.58 0.16 0.69 16 17 C -0.18 0.28 8.78 22.38 0.20 0.48 16 18 C -0.03 -0.03 6.22 22.31 0.14 0.11 16 19 Br -0.02 -0.02 31.96 -20.37 -0.65 -0.67 16 20 C -0.13 -0.19 6.20 22.33 0.14 -0.05 16 21 I -0.01 -0.01 38.57 -18.82 -0.73 -0.74 16 22 C -0.04 -0.01 8.37 22.26 0.19 0.18 16 23 H 0.38 -0.94 8.64 -74.06 -0.64 -1.58 16 24 H 0.08 0.01 7.82 -2.39 -0.02 -0.01 16 25 H -0.29 -1.86 7.11 99.48 0.71 -1.15 16 26 H -0.26 -0.57 7.11 99.48 0.71 0.13 16 27 H 0.08 -0.76 7.65 -2.39 -0.02 -0.77 16 28 H 0.08 -0.67 7.67 -2.39 -0.02 -0.69 16 29 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.08 -0.66 8.14 -2.38 -0.02 -0.68 16 31 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 32 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.39 -2.44 9.08 -74.05 -0.67 -3.12 16 34 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.06 -0.19 7.82 -2.39 -0.02 -0.21 16 38 H 0.16 -0.93 6.30 -2.91 -0.02 -0.95 16 39 H 0.16 -0.47 5.13 -2.91 -0.01 -0.48 16 Total: 0.00 -10.61 358.10 -2.25 -12.86 By element: Atomic # 1 Polarization: -11.73 SS G_CDS: -0.18 Total: -11.91 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 1.90 Total: 3.73 kcal Atomic # 8 Polarization: -0.74 SS G_CDS: -4.66 Total: -5.41 kcal Atomic # 14 Polarization: 0.07 SS G_CDS: 2.07 Total: 2.14 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.65 Total: -0.67 kcal Atomic # 53 Polarization: -0.01 SS G_CDS: -0.73 Total: -0.74 kcal Total: -10.61 -2.25 -12.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_15786360_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.103 kcal (2) G-P(sol) polarization free energy of solvation -10.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds