Wall clock time and date at job start Mon Mar 8 2021 08:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34754 * 117.00346 * 2 1 4 4 O 1.21511 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.47395 * 120.00026 * 180.02562 * 3 2 1 6 6 C 1.40202 * 120.19447 * 180.31661 * 5 3 2 7 7 O 1.35644 * 120.15664 * 0.02562 * 6 5 3 8 8 C 1.42895 * 117.00135 * 180.25025 * 7 6 5 9 9 C 1.53001 * 109.47308 * 180.02562 * 8 7 6 10 10 H 1.09007 * 112.84451 * 316.19196 * 9 8 7 11 11 C 1.53777 * 113.61663 * 87.49922 * 9 8 7 12 12 C 1.53782 * 87.08035 * 139.98102 * 11 9 8 13 13 H 1.09000 * 113.61129 * 89.11971 * 12 11 9 14 14 O 1.42899 * 113.61575 * 220.02058 * 12 11 9 15 15 C 1.53779 * 87.08261 * 334.56994 * 12 11 9 16 16 C 1.38703 * 119.69107 * 180.25272 * 6 5 3 17 17 C 1.38056 * 120.08561 * 359.45144 * 16 6 5 18 18 C 1.50703 * 119.79699 * 180.27626 * 17 16 6 19 19 O 1.42903 * 109.46965 * 65.00191 * 18 17 16 20 20 Si 1.86302 * 109.47298 * 185.00176 * 18 17 16 21 21 C 1.38554 * 120.40790 * 0.25953 * 17 16 6 22 22 C 1.37771 * 120.30808 * 0.02562 * 21 17 16 23 23 H 1.08993 * 109.47384 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47090 * 300.00084 * 1 2 3 25 25 H 1.08995 * 109.46924 * 59.99622 * 1 2 3 26 26 H 1.09003 * 109.47106 * 299.99963 * 8 7 6 27 27 H 1.08999 * 109.47086 * 59.99565 * 8 7 6 28 28 H 1.08998 * 113.61404 * 254.53331 * 11 9 8 29 29 H 1.09004 * 113.61416 * 25.43522 * 11 9 8 30 30 H 0.96703 * 113.99759 * 277.49846 * 14 12 11 31 31 H 1.09001 * 113.61294 * 270.88259 * 15 12 11 32 32 H 1.09001 * 113.69338 * 139.99171 * 15 12 11 33 33 H 1.08002 * 119.95929 * 179.73460 * 16 6 5 34 34 H 1.09005 * 109.47292 * 305.00527 * 18 17 16 35 35 H 0.96696 * 113.99550 * 60.00105 * 19 18 17 36 36 H 1.48502 * 109.99625 * 58.68476 * 20 18 17 37 37 H 1.48494 * 109.99863 * 179.97438 * 20 18 17 38 38 H 1.07999 * 119.84902 * 179.97438 * 21 17 16 39 39 H 1.07992 * 120.05052 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2197 0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.1766 2.5247 0.0061 7 8 3.4449 3.6668 0.0137 8 6 4.1670 4.8999 0.0146 9 6 3.1799 6.0689 0.0242 10 1 2.3494 5.9272 -0.6675 11 6 2.7428 6.4946 1.4357 12 6 2.8372 7.9478 0.9414 13 1 1.9121 8.3203 0.5016 14 8 3.3964 8.8445 1.9033 15 6 3.8544 7.4456 -0.0969 16 6 5.5623 2.5850 0.0002 17 6 6.3057 1.4217 -0.0008 18 6 7.8110 1.4949 -0.0009 19 8 8.2592 2.0858 1.2206 20 14 8.5163 -0.2225 -0.1555 21 6 5.6764 0.1873 -0.0013 22 6 4.3010 0.1081 -0.0014 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 4.7982 4.9506 0.9018 27 1 4.7898 4.9569 -0.8781 28 1 1.7293 6.1852 1.6908 29 1 3.4691 6.2489 2.2104 30 1 2.7614 9.1638 2.5590 31 1 4.8846 7.4599 0.2588 32 1 3.7395 7.9033 -1.0795 33 1 6.0604 3.5433 0.0010 34 1 8.1452 2.1021 -0.8423 35 1 7.9973 1.5974 2.0130 36 1 8.0320 -0.8597 -1.4064 37 1 10.0000 -0.1639 -0.1574 38 1 6.2669 -0.7170 -0.0025 39 1 3.8149 -0.8562 -0.0022 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_16464166_11354860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:55:42 Heat of formation + Delta-G solvation = -143.006838 kcal Electronic energy + Delta-G solvation = -23949.050820 eV Core-core repulsion = 20211.111720 eV Total energy + Delta-G solvation = -3737.939100 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89997 -40.81515 -40.24476 -39.01499 -37.45429 -37.14866 -36.01162 -33.14050 -31.46400 -29.41169 -28.93701 -27.20170 -26.77585 -24.38108 -23.73584 -22.82594 -21.89368 -20.57585 -19.33989 -18.70059 -18.63533 -18.04383 -17.74630 -17.34777 -16.90990 -16.68022 -16.42210 -16.13272 -15.97009 -15.63341 -15.44432 -14.84001 -14.65313 -14.36131 -14.17865 -13.98628 -13.52286 -13.49215 -13.26799 -13.15965 -12.86803 -12.60307 -12.43731 -12.31444 -12.20278 -11.86316 -11.76113 -11.65315 -11.31812 -11.24508 -10.78241 -10.60399 -10.17349 -9.42193 -5.10767 -0.44916 0.22700 1.16707 1.53453 1.59793 1.76038 1.89577 1.96729 2.58666 3.18844 3.24871 3.40870 3.43126 3.52242 3.62561 3.72679 3.80249 3.85730 3.95956 4.02028 4.15196 4.19763 4.24162 4.29300 4.32166 4.32629 4.42277 4.59961 4.64150 4.67181 4.72358 4.74041 4.92668 4.95429 5.01030 5.08195 5.19297 5.32313 5.46910 5.49164 6.23768 6.42943 6.67681 6.90808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.507 3.493 4 O -0.485 6.485 5 C -0.162 4.162 6 C 0.197 3.803 7 O -0.278 6.278 8 C 0.064 3.936 9 C -0.107 4.107 10 H 0.107 0.893 11 C -0.162 4.162 12 C 0.076 3.924 13 H 0.085 0.915 14 O -0.560 6.560 15 C -0.120 4.120 16 C -0.198 4.198 17 C -0.042 4.042 18 C -0.077 4.077 19 O -0.536 6.536 20 Si 0.692 3.308 21 C -0.171 4.171 22 C -0.016 4.016 23 H 0.103 0.897 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.380 0.620 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.381 0.619 36 H -0.254 1.254 37 H -0.253 1.253 38 H 0.138 0.862 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 -2.921 1.417 3.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.351 3.649 4 O -0.373 6.373 5 C -0.163 4.163 6 C 0.148 3.852 7 O -0.189 6.189 8 C -0.011 4.011 9 C -0.125 4.125 10 H 0.125 0.875 11 C -0.200 4.200 12 C 0.017 3.983 13 H 0.103 0.897 14 O -0.366 6.366 15 C -0.158 4.158 16 C -0.217 4.217 17 C -0.043 4.043 18 C -0.187 4.187 19 O -0.342 6.342 20 Si 0.594 3.406 21 C -0.188 4.188 22 C -0.034 4.034 23 H 0.122 0.878 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.228 0.772 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.229 0.771 36 H -0.179 1.179 37 H -0.178 1.178 38 H 0.155 0.845 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.337 -2.785 0.174 2.810 hybrid contribution -0.790 0.738 -0.023 1.082 sum -0.453 -2.046 0.151 2.101 Atomic orbital electron populations 1.23282 0.75653 1.03870 1.02720 1.86519 1.23762 1.32625 1.84740 1.20818 0.88635 0.81723 0.73760 1.90904 1.66304 1.35621 1.44431 1.18466 0.89841 0.91853 1.16190 1.18998 0.89749 0.85870 0.90548 1.86328 1.34540 1.11980 1.86085 1.22984 0.94730 0.81459 1.01903 1.22299 0.99097 0.91891 0.99258 0.87464 1.23760 1.02939 0.96599 0.96695 1.23283 0.96599 0.88046 0.90337 0.89729 1.86519 1.40639 1.65186 1.44234 1.23075 0.99949 0.93576 0.99154 1.21077 0.91477 1.00085 1.09071 1.20436 0.96448 0.92912 0.94497 1.25231 0.91733 1.11143 0.90638 1.86531 1.78141 1.54565 1.14916 0.94601 0.80390 0.77644 0.88000 1.20869 0.94617 0.96756 1.06600 1.21298 0.93172 0.97512 0.91438 0.87837 0.91762 0.91808 0.91210 0.91381 0.90666 0.89117 0.77202 0.88803 0.90116 0.84091 0.86487 0.77136 1.17904 1.17766 0.84499 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.00 10.57 101.05 1.07 1.06 16 2 O -0.36 -0.79 9.82 -40.64 -0.40 -1.19 16 3 C 0.51 2.06 7.89 34.46 0.27 2.33 16 4 O -0.49 -3.28 14.95 -26.60 -0.40 -3.68 16 5 C -0.16 -0.40 5.89 -104.86 -0.62 -1.02 16 6 C 0.20 0.51 6.70 -38.67 -0.26 0.25 16 7 O -0.28 -0.98 8.21 -40.51 -0.33 -1.31 16 8 C 0.06 0.04 4.58 37.16 0.17 0.21 16 9 C -0.11 -0.04 4.01 -89.81 -0.36 -0.40 16 10 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 11 C -0.16 -0.07 7.46 -25.92 -0.19 -0.27 16 12 C 0.08 0.01 5.21 -25.92 -0.14 -0.13 16 13 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 14 O -0.56 -0.65 13.67 -35.23 -0.48 -1.14 16 15 C -0.12 0.02 7.47 -25.92 -0.19 -0.18 16 16 C -0.20 -0.16 8.65 -39.48 -0.34 -0.50 16 17 C -0.04 0.02 5.36 -104.57 -0.56 -0.54 16 18 C -0.08 0.09 2.79 36.01 0.10 0.19 16 19 O -0.54 0.34 12.83 -35.23 -0.45 -0.11 16 20 Si 0.69 -1.37 29.78 -169.99 -5.06 -6.43 16 21 C -0.17 0.21 8.64 -39.64 -0.34 -0.14 16 22 C -0.02 0.00 9.61 -39.18 -0.38 -0.37 16 23 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 24 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 25 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 26 H 0.07 0.00 7.36 -51.93 -0.38 -0.39 16 27 H 0.07 -0.03 7.66 -51.93 -0.40 -0.43 16 28 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.09 0.08 7.90 -51.93 -0.41 -0.33 16 30 H 0.38 -1.06 9.12 45.56 0.42 -0.65 16 31 H 0.09 0.01 8.10 -51.93 -0.42 -0.41 16 32 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.14 -0.01 6.30 -52.49 -0.33 -0.34 16 34 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.38 -1.69 8.70 45.56 0.40 -1.30 16 36 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 37 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 38 H 0.14 -0.49 4.88 -52.49 -0.26 -0.75 16 39 H 0.15 -0.31 7.61 -52.49 -0.40 -0.71 16 LS Contribution 330.87 15.07 4.99 4.99 Total: 0.00 -8.80 330.87 -8.26 -17.06 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -4.35 Total: -8.70 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.77 Total: 0.50 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -2.06 Total: -7.42 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -5.06 Total: -6.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -8.80 -8.26 -17.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_11354860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.943 kcal (2) G-P(sol) polarization free energy of solvation -8.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds