Wall clock time and date at job start Mon Mar 8 2021 08:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34754 * 117.00346 * 2 1 4 4 O 1.21511 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.47395 * 120.00026 * 180.02562 * 3 2 1 6 6 C 1.40202 * 120.19447 * 180.31661 * 5 3 2 7 7 O 1.35644 * 120.15664 * 0.02562 * 6 5 3 8 8 C 1.42895 * 117.00135 * 180.25025 * 7 6 5 9 9 C 1.53001 * 109.47308 * 180.02562 * 8 7 6 10 10 H 1.09007 * 112.84451 * 316.19196 * 9 8 7 11 11 C 1.53777 * 113.61663 * 87.49922 * 9 8 7 12 12 C 1.53782 * 87.08035 * 139.98102 * 11 9 8 13 13 H 1.09000 * 113.61129 * 89.11971 * 12 11 9 14 14 O 1.42899 * 113.61575 * 220.02058 * 12 11 9 15 15 C 1.53779 * 87.08261 * 334.56994 * 12 11 9 16 16 C 1.38703 * 119.69107 * 180.25272 * 6 5 3 17 17 C 1.38056 * 120.08561 * 359.45144 * 16 6 5 18 18 C 1.50703 * 119.79699 * 180.27626 * 17 16 6 19 19 O 1.42903 * 109.46965 * 65.00191 * 18 17 16 20 20 Si 1.86302 * 109.47298 * 185.00176 * 18 17 16 21 21 C 1.38554 * 120.40790 * 0.25953 * 17 16 6 22 22 C 1.37771 * 120.30808 * 0.02562 * 21 17 16 23 23 H 1.08993 * 109.47384 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47090 * 300.00084 * 1 2 3 25 25 H 1.08995 * 109.46924 * 59.99622 * 1 2 3 26 26 H 1.09003 * 109.47106 * 299.99963 * 8 7 6 27 27 H 1.08999 * 109.47086 * 59.99565 * 8 7 6 28 28 H 1.08998 * 113.61404 * 254.53331 * 11 9 8 29 29 H 1.09004 * 113.61416 * 25.43522 * 11 9 8 30 30 H 0.96703 * 113.99759 * 277.49846 * 14 12 11 31 31 H 1.09001 * 113.61294 * 270.88259 * 15 12 11 32 32 H 1.09001 * 113.69338 * 139.99171 * 15 12 11 33 33 H 1.08002 * 119.95929 * 179.73460 * 16 6 5 34 34 H 1.09005 * 109.47292 * 305.00527 * 18 17 16 35 35 H 0.96696 * 113.99550 * 60.00105 * 19 18 17 36 36 H 1.48502 * 109.99625 * 58.68476 * 20 18 17 37 37 H 1.48494 * 109.99863 * 179.97438 * 20 18 17 38 38 H 1.07999 * 119.84902 * 179.97438 * 21 17 16 39 39 H 1.07992 * 120.05052 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2197 0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.1766 2.5247 0.0061 7 8 3.4449 3.6668 0.0137 8 6 4.1670 4.8999 0.0146 9 6 3.1799 6.0689 0.0242 10 1 2.3494 5.9272 -0.6675 11 6 2.7428 6.4946 1.4357 12 6 2.8372 7.9478 0.9414 13 1 1.9121 8.3203 0.5016 14 8 3.3964 8.8445 1.9033 15 6 3.8544 7.4456 -0.0969 16 6 5.5623 2.5850 0.0002 17 6 6.3057 1.4217 -0.0008 18 6 7.8110 1.4949 -0.0009 19 8 8.2592 2.0858 1.2206 20 14 8.5163 -0.2225 -0.1555 21 6 5.6764 0.1873 -0.0013 22 6 4.3010 0.1081 -0.0014 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 4.7982 4.9506 0.9018 27 1 4.7898 4.9569 -0.8781 28 1 1.7293 6.1852 1.6908 29 1 3.4691 6.2489 2.2104 30 1 2.7614 9.1638 2.5590 31 1 4.8846 7.4599 0.2588 32 1 3.7395 7.9033 -1.0795 33 1 6.0604 3.5433 0.0010 34 1 8.1452 2.1021 -0.8423 35 1 7.9973 1.5974 2.0130 36 1 8.0320 -0.8597 -1.4064 37 1 10.0000 -0.1639 -0.1574 38 1 6.2669 -0.7170 -0.0025 39 1 3.8149 -0.8562 -0.0022 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16464166_11354860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:55:41 Heat of formation + Delta-G solvation = -143.483126 kcal Electronic energy + Delta-G solvation = -23949.071473 eV Core-core repulsion = 20211.111720 eV Total energy + Delta-G solvation = -3737.959753 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.00496 -40.95565 -40.28235 -39.04276 -37.48328 -37.32053 -36.05436 -33.17330 -31.48087 -29.45348 -28.97067 -27.19896 -26.79850 -24.39617 -23.79963 -22.84616 -21.99368 -20.60799 -19.42046 -18.77781 -18.67186 -18.06383 -17.85984 -17.50992 -17.00831 -16.71811 -16.41319 -16.11469 -15.94477 -15.65564 -15.43510 -14.84192 -14.67101 -14.44588 -14.29606 -14.01242 -13.57319 -13.52467 -13.30078 -13.15728 -12.88483 -12.63150 -12.44997 -12.33745 -12.21130 -11.86662 -11.81772 -11.78558 -11.51650 -11.28771 -10.80395 -10.53641 -10.19695 -9.47146 -4.96703 -0.52152 0.22104 1.27966 1.39055 1.64944 1.68160 1.92148 2.00303 2.53023 3.22129 3.30298 3.39835 3.50486 3.54356 3.62999 3.71815 3.78730 3.85659 3.95827 4.06054 4.14997 4.18797 4.27958 4.29623 4.31100 4.35156 4.44071 4.60853 4.68135 4.68737 4.70794 4.73584 4.91642 4.92137 5.02643 5.06495 5.20524 5.28893 5.30981 5.53180 6.17491 6.68924 6.72162 6.82234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.504 3.496 4 O -0.524 6.524 5 C -0.185 4.185 6 C 0.179 3.821 7 O -0.302 6.302 8 C 0.063 3.937 9 C -0.106 4.106 10 H 0.100 0.900 11 C -0.162 4.162 12 C 0.077 3.923 13 H 0.098 0.902 14 O -0.579 6.579 15 C -0.117 4.117 16 C -0.203 4.203 17 C -0.038 4.038 18 C -0.084 4.084 19 O -0.552 6.552 20 Si 0.785 3.215 21 C -0.164 4.164 22 C -0.009 4.009 23 H 0.135 0.865 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.395 0.605 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.397 0.603 36 H -0.279 1.279 37 H -0.300 1.300 38 H 0.166 0.834 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -4.018 1.512 4.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.350 3.650 4 O -0.414 6.414 5 C -0.187 4.187 6 C 0.131 3.869 7 O -0.214 6.214 8 C -0.012 4.012 9 C -0.124 4.124 10 H 0.118 0.882 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.115 0.885 14 O -0.387 6.387 15 C -0.155 4.155 16 C -0.222 4.222 17 C -0.039 4.039 18 C -0.193 4.193 19 O -0.360 6.360 20 Si 0.690 3.310 21 C -0.181 4.181 22 C -0.027 4.027 23 H 0.153 0.847 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.245 0.755 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.163 0.837 34 H 0.130 0.870 35 H 0.248 0.752 36 H -0.205 1.205 37 H -0.228 1.228 38 H 0.183 0.817 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.866 -3.886 0.300 3.992 hybrid contribution -0.922 1.057 -0.042 1.404 sum -0.056 -2.828 0.258 2.840 Atomic orbital electron populations 1.23525 0.74512 1.05782 1.02314 1.86514 1.24940 1.31664 1.84271 1.21201 0.89352 0.81647 0.72751 1.90874 1.67205 1.36803 1.46509 1.18659 0.89285 0.92885 1.17859 1.19238 0.90443 0.85763 0.91456 1.86297 1.35780 1.12875 1.86451 1.23083 0.94793 0.80782 1.02527 1.22263 0.98981 0.92219 0.98971 0.88164 1.23730 1.02370 0.97251 0.96645 1.23354 0.97097 0.87551 0.90190 0.88474 1.86474 1.41959 1.65340 1.44942 1.23061 0.99682 0.93064 0.99642 1.21160 0.90852 1.00904 1.09299 1.20610 0.96800 0.92898 0.93599 1.25418 0.91178 1.12095 0.90604 1.86500 1.78274 1.55473 1.15746 0.93569 0.76436 0.75266 0.85772 1.21158 0.94413 0.97417 1.05121 1.21549 0.93506 0.97405 0.90241 0.84710 0.92179 0.92302 0.90798 0.90444 0.91266 0.89718 0.75459 0.89086 0.89159 0.83720 0.86959 0.75231 1.20537 1.22822 0.81725 0.81156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.57 113.37 1.20 1.20 16 2 O -0.36 -1.69 9.82 -56.64 -0.56 -2.25 16 3 C 0.50 4.79 7.89 70.23 0.55 5.34 16 4 O -0.52 -8.28 14.95 26.80 0.40 -7.88 16 5 C -0.18 -1.06 5.89 -20.02 -0.12 -1.18 16 6 C 0.18 1.15 6.70 22.86 0.15 1.30 16 7 O -0.30 -2.72 8.21 -68.66 -0.56 -3.28 16 8 C 0.06 0.17 4.58 71.98 0.33 0.50 16 9 C -0.11 -0.22 4.01 -10.27 -0.04 -0.26 16 10 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 11 C -0.16 -0.37 7.46 31.12 0.23 -0.14 16 12 C 0.08 0.06 5.21 31.12 0.16 0.22 16 13 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 14 O -0.58 -1.53 13.67 -148.98 -2.04 -3.57 16 15 C -0.12 -0.03 7.47 31.12 0.23 0.20 16 16 C -0.20 -0.41 8.65 22.34 0.19 -0.22 16 17 C -0.04 0.06 5.36 -19.83 -0.11 -0.05 16 18 C -0.08 0.25 2.79 71.24 0.20 0.45 16 19 O -0.55 1.11 12.83 -148.98 -1.91 -0.80 16 20 Si 0.78 -4.03 29.78 68.60 2.04 -1.98 16 21 C -0.16 0.65 8.64 22.23 0.19 0.84 16 22 C -0.01 0.01 9.61 22.53 0.22 0.23 16 23 H 0.13 -0.90 8.14 -2.39 -0.02 -0.91 16 24 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.07 0.10 7.36 -2.39 -0.02 0.08 16 27 H 0.08 0.01 7.66 -2.39 -0.02 0.00 16 28 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.08 0.28 7.90 -2.39 -0.02 0.26 16 30 H 0.40 -2.10 9.12 -74.06 -0.68 -2.78 16 31 H 0.09 0.08 8.10 -2.39 -0.02 0.06 16 32 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.15 0.08 6.30 -2.91 -0.02 0.06 16 34 H 0.11 -0.23 7.96 -2.38 -0.02 -0.25 16 35 H 0.40 -4.00 8.70 -74.06 -0.64 -4.64 16 36 H -0.28 0.24 7.11 99.48 0.71 0.95 16 37 H -0.30 -0.88 7.11 99.48 0.71 -0.18 16 38 H 0.17 -1.63 4.88 -2.91 -0.01 -1.65 16 39 H 0.17 -0.99 7.61 -2.91 -0.02 -1.02 16 Total: 0.00 -21.70 330.87 0.58 -21.11 By element: Atomic # 1 Polarization: -9.59 SS G_CDS: -0.19 Total: -9.78 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 3.40 Total: 8.43 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -4.67 Total: -17.78 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.04 Total: -1.98 kcal Total: -21.70 0.58 -21.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_11354860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.372 kcal (2) G-P(sol) polarization free energy of solvation -21.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds