Wall clock time and date at job start Mon Mar 8 2021 11:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34746 * 116.99709 * 2 1 4 4 O 1.21508 * 120.00352 * 0.02562 * 3 2 1 5 5 C 1.47400 * 119.99631 * 180.02562 * 3 2 1 6 6 C 1.40197 * 120.19814 * 179.72610 * 5 3 2 7 7 O 1.35633 * 120.15321 * 0.25330 * 6 5 3 8 8 C 1.42901 * 117.00111 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47234 * 179.97438 * 8 7 6 10 10 H 1.09001 * 112.84929 * 314.67210 * 9 8 7 11 11 C 1.53777 * 113.60983 * 85.86366 * 9 8 7 12 12 C 1.53958 * 87.02124 * 139.95280 * 11 9 8 13 13 H 1.08997 * 113.53836 * 89.18604 * 12 11 9 14 14 O 1.42896 * 113.74372 * 220.05788 * 12 11 9 15 15 C 1.42905 * 113.99784 * 247.59475 * 14 12 11 16 16 C 1.52998 * 109.47238 * 59.99990 * 15 14 12 17 17 C 1.53003 * 109.46929 * 180.02562 * 15 14 12 18 18 C 1.52995 * 109.46932 * 299.99717 * 15 14 12 19 19 C 1.53783 * 113.61464 * 183.46919 * 9 8 7 20 20 C 1.38708 * 119.69370 * 180.27673 * 6 5 3 21 21 C 1.38053 * 120.08702 * 0.02562 * 20 6 5 22 22 C 1.50700 * 119.79739 * 179.97438 * 21 20 6 23 23 O 1.42900 * 109.47090 * 65.02167 * 22 21 20 24 24 Si 1.86302 * 109.47268 * 185.01858 * 22 21 20 25 25 C 1.38561 * 120.40532 * 359.97438 * 21 20 6 26 26 C 1.37762 * 120.30964 * 0.02562 * 25 21 20 27 27 H 1.08999 * 109.46959 * 299.99907 * 1 2 3 28 28 H 1.09003 * 109.47537 * 59.99744 * 1 2 3 29 29 H 1.09003 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47262 * 300.00086 * 8 7 6 31 31 H 1.09005 * 109.47025 * 60.00323 * 8 7 6 32 32 H 1.09007 * 113.61428 * 254.52715 * 11 9 8 33 33 H 1.08993 * 113.61949 * 25.43237 * 11 9 8 34 34 H 1.09002 * 109.46953 * 59.99723 * 16 15 14 35 35 H 1.08997 * 109.46925 * 180.02562 * 16 15 14 36 36 H 1.09000 * 109.46862 * 300.00269 * 16 15 14 37 37 H 1.09002 * 109.47245 * 59.99986 * 17 15 14 38 38 H 1.09000 * 109.46648 * 180.02562 * 17 15 14 39 39 H 1.09002 * 109.46910 * 300.00061 * 17 15 14 40 40 H 1.09005 * 109.47178 * 60.00583 * 18 15 14 41 41 H 1.09000 * 109.47059 * 179.97438 * 18 15 14 42 42 H 1.09002 * 109.47534 * 300.00193 * 18 15 14 43 43 H 1.09002 * 113.61176 * 334.57078 * 19 9 8 44 44 H 1.09000 * 113.61265 * 105.47011 * 19 9 8 45 45 H 1.07992 * 119.95835 * 180.02562 * 20 6 5 46 46 H 1.09005 * 109.47278 * 305.01977 * 22 21 20 47 47 H 0.96704 * 113.99771 * 179.97438 * 23 22 21 48 48 H 1.48498 * 109.99867 * 300.00180 * 24 22 21 49 49 H 1.48504 * 109.99775 * 61.31961 * 24 22 21 50 50 H 1.08000 * 119.85077 * 179.97438 * 25 21 20 51 51 H 1.07998 * 120.05455 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2778 -0.0006 6 6 4.1765 2.5247 -0.0064 7 8 3.4448 3.6667 -0.0063 8 6 4.1669 4.8999 -0.0130 9 6 3.1798 6.0689 -0.0125 10 1 2.3642 5.9346 -0.7231 11 6 2.7105 6.4782 1.3936 12 6 2.8174 7.9382 0.9168 13 1 1.9019 8.3154 0.4613 14 8 3.3554 8.8261 1.8987 15 6 2.4166 9.7834 2.3932 16 6 1.2381 9.0542 3.0414 17 6 3.0982 10.6765 3.4319 18 6 1.9089 10.6449 1.2352 19 6 3.8566 7.4467 -0.1046 20 6 5.5622 2.5850 -0.0127 21 6 6.3056 1.4218 -0.0138 22 6 7.8108 1.4950 -0.0212 23 8 8.2649 2.0890 1.1966 24 14 8.5154 -0.2229 -0.1746 25 6 5.6763 0.1873 -0.0080 26 6 4.3010 0.1081 -0.0018 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.7978 4.9563 0.8740 31 1 4.7899 4.9513 -0.9059 32 1 1.6914 6.1660 1.6219 33 1 3.4189 6.2233 2.1818 34 1 1.5999 8.4405 3.8663 35 1 0.5219 9.7844 3.4181 36 1 0.7528 8.4183 2.3010 37 1 3.9376 11.1960 2.9697 38 1 2.3820 11.4063 3.8094 39 1 3.4603 10.0630 4.2569 40 1 1.4235 10.0090 0.4949 41 1 1.1926 11.3748 1.6123 42 1 2.7486 11.1644 0.7734 43 1 4.8790 7.4570 0.2732 44 1 3.7615 7.9152 -1.0842 45 1 6.0603 3.5433 -0.0167 46 1 8.1411 2.0998 -0.8658 47 1 9.2265 2.1678 1.2611 48 1 8.0725 -1.0576 0.9710 49 1 8.0764 -0.8397 -1.4521 50 1 6.2667 -0.7170 -0.0094 51 1 3.8148 -0.8562 0.0031 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_16464166_14598386.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:17:35 Heat of formation + Delta-G solvation = -144.374558 kcal Electronic energy + Delta-G solvation = -31769.455863 eV Core-core repulsion = 27409.306978 eV Total energy + Delta-G solvation = -4360.148884 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.186 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.87413 -40.97424 -40.47653 -39.21788 -38.14388 -37.36907 -37.13069 -33.89162 -33.22328 -31.45361 -29.49855 -28.94839 -28.38147 -28.29542 -27.16718 -26.60871 -24.40752 -23.58355 -22.94028 -21.88562 -20.80761 -20.52428 -19.24023 -18.57994 -18.40283 -18.06868 -17.66389 -17.30300 -16.97748 -16.86441 -16.53263 -16.25910 -15.98209 -15.69539 -15.59966 -15.32476 -14.60484 -14.54342 -14.51070 -14.28232 -14.16745 -14.07945 -13.83795 -13.50857 -13.42664 -13.31089 -13.16397 -13.03519 -12.95960 -12.78629 -12.66187 -12.62443 -12.46807 -12.33922 -12.14292 -11.98469 -11.87732 -11.68611 -11.63454 -11.36306 -11.25498 -11.15786 -10.50256 -10.31767 -10.11498 -9.39853 -5.04117 -0.42787 0.24187 1.16401 1.53314 1.62410 1.78052 1.89462 1.99090 2.57943 2.74972 3.17349 3.47231 3.52074 3.58847 3.67997 3.73760 3.77665 3.81557 3.90242 3.97445 3.98573 4.05162 4.07870 4.10640 4.22110 4.25441 4.26851 4.31738 4.33770 4.44003 4.52199 4.57643 4.63189 4.66152 4.68368 4.76353 4.77733 4.80970 4.82975 4.89917 4.92918 4.93056 5.00462 5.05578 5.11713 5.17391 5.22106 5.31104 5.33094 5.38795 5.48590 5.49604 6.26657 6.43768 6.48903 6.92941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.508 3.492 4 O -0.484 6.484 5 C -0.162 4.162 6 C 0.199 3.801 7 O -0.277 6.277 8 C 0.064 3.936 9 C -0.107 4.107 10 H 0.105 0.895 11 C -0.147 4.147 12 C 0.062 3.938 13 H 0.092 0.908 14 O -0.361 6.361 15 C 0.105 3.895 16 C -0.177 4.177 17 C -0.139 4.139 18 C -0.179 4.179 19 C -0.126 4.126 20 C -0.195 4.195 21 C 0.003 3.997 22 C -0.081 4.081 23 O -0.543 6.543 24 Si 0.688 3.312 25 C -0.179 4.179 26 C -0.015 4.015 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.143 0.857 46 H 0.080 0.920 47 H 0.385 0.615 48 H -0.247 1.247 49 H -0.252 1.252 50 H 0.129 0.871 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 0.066 -1.370 3.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.352 3.648 4 O -0.371 6.371 5 C -0.164 4.164 6 C 0.151 3.849 7 O -0.188 6.188 8 C -0.011 4.011 9 C -0.126 4.126 10 H 0.124 0.876 11 C -0.184 4.184 12 C 0.004 3.996 13 H 0.110 0.890 14 O -0.280 6.280 15 C 0.066 3.934 16 C -0.234 4.234 17 C -0.196 4.196 18 C -0.236 4.236 19 C -0.163 4.163 20 C -0.213 4.213 21 C 0.003 3.997 22 C -0.191 4.191 23 O -0.349 6.349 24 Si 0.588 3.412 25 C -0.196 4.196 26 C -0.033 4.033 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.161 0.839 46 H 0.098 0.902 47 H 0.233 0.767 48 H -0.172 1.172 49 H -0.177 1.177 50 H 0.146 0.854 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.625 -0.414 -1.262 2.942 hybrid contribution -0.726 0.451 -0.202 0.878 sum 1.899 0.037 -1.464 2.398 Atomic orbital electron populations 1.23284 0.75650 1.03852 1.02736 1.86520 1.23777 1.32644 1.84753 1.20773 0.88548 0.81731 0.73769 1.90900 1.66248 1.35564 1.44423 1.18443 0.89898 0.91767 1.16314 1.18964 0.89673 0.85900 0.90384 1.86328 1.34496 1.11953 1.86031 1.22994 0.94789 0.81407 1.01879 1.22288 0.98928 0.91882 0.99475 0.87649 1.23624 1.02685 0.95605 0.96510 1.23597 0.97158 0.88909 0.89886 0.89018 1.88029 1.37082 1.45817 1.57112 1.21538 0.89458 0.88766 0.93666 1.22471 0.98190 1.01102 1.01653 1.21769 1.01045 0.98781 0.97993 1.22472 1.02027 1.00454 0.98691 1.23228 1.00036 0.93707 0.99370 1.21054 0.91474 0.99948 1.08872 1.19405 0.93837 0.92762 0.93741 1.24822 0.93305 1.10669 0.90350 1.86496 1.27651 1.84118 1.36671 0.95213 0.90396 0.74731 0.80856 1.20763 0.94809 0.96708 1.07349 1.21233 0.92900 0.97633 0.91527 0.91753 0.91768 0.87866 0.91174 0.91399 0.90833 0.89162 0.91663 0.91546 0.92258 0.91763 0.91078 0.91765 0.92231 0.91363 0.91603 0.88780 0.90372 0.83886 0.90235 0.76668 1.17180 1.17652 0.85368 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.03 10.57 101.05 1.07 1.10 16 2 O -0.36 -1.22 9.82 -40.62 -0.40 -1.62 16 3 C 0.51 2.69 7.89 34.46 0.27 2.97 16 4 O -0.48 -3.72 14.95 -26.60 -0.40 -4.12 16 5 C -0.16 -0.68 5.89 -104.86 -0.62 -1.30 16 6 C 0.20 0.80 6.70 -38.67 -0.26 0.54 16 7 O -0.28 -1.23 8.21 -40.48 -0.33 -1.56 16 8 C 0.06 0.08 4.56 37.16 0.17 0.25 16 9 C -0.11 -0.09 4.00 -89.81 -0.36 -0.45 16 10 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 11 C -0.15 -0.22 7.48 -25.83 -0.19 -0.41 16 12 C 0.06 0.06 2.82 -25.82 -0.07 -0.01 16 13 H 0.09 0.02 5.54 -51.93 -0.29 -0.27 16 14 O -0.36 -0.88 10.00 -35.23 -0.35 -1.23 16 15 C 0.10 0.09 1.11 -90.62 -0.10 -0.01 16 16 C -0.18 -0.08 8.39 37.16 0.31 0.23 16 17 C -0.14 -0.04 8.84 37.16 0.33 0.29 16 18 C -0.18 0.01 8.38 37.16 0.31 0.32 16 19 C -0.13 0.01 7.48 -25.92 -0.19 -0.19 16 20 C -0.19 -0.46 8.65 -39.48 -0.34 -0.81 16 21 C 0.00 0.01 5.39 -104.57 -0.56 -0.56 16 22 C -0.08 0.06 2.78 36.01 0.10 0.16 16 23 O -0.54 0.27 12.81 -35.23 -0.45 -0.19 16 24 Si 0.69 -1.22 29.83 -169.99 -5.07 -6.29 16 25 C -0.18 -0.38 8.64 -39.64 -0.34 -0.72 16 26 C -0.01 -0.03 9.61 -39.18 -0.38 -0.41 16 27 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 30 H 0.07 0.05 7.40 -51.93 -0.38 -0.34 16 31 H 0.07 -0.02 7.66 -51.93 -0.40 -0.42 16 32 H 0.07 0.15 8.14 -51.92 -0.42 -0.27 16 33 H 0.09 0.19 7.92 -51.93 -0.41 -0.22 16 34 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.06 0.03 7.02 -51.93 -0.36 -0.33 16 37 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 39 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.06 -0.02 6.24 -51.93 -0.32 -0.34 16 41 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 42 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 43 H 0.09 0.00 8.10 -51.93 -0.42 -0.42 16 44 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 45 H 0.14 0.10 6.30 -52.49 -0.33 -0.23 16 46 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 47 H 0.39 -2.15 8.74 45.56 0.40 -1.75 16 48 H -0.25 -0.32 7.04 56.52 0.40 0.08 16 49 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 50 H 0.13 0.13 4.83 -52.49 -0.25 -0.12 16 51 H 0.15 0.05 7.61 -52.49 -0.40 -0.35 16 LS Contribution 410.11 15.07 6.18 6.18 Total: 0.00 -8.30 410.11 -9.97 -18.27 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -8.29 Total: -10.44 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.86 Total: 1.00 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -1.93 Total: -8.72 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.07 Total: -6.29 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -8.30 -9.97 -18.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_14598386.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.109 kcal (2) G-P(sol) polarization free energy of solvation -8.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds