Wall clock time and date at job start Mon Mar 8 2021 11:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34746 * 116.99709 * 2 1 4 4 O 1.21508 * 120.00352 * 0.02562 * 3 2 1 5 5 C 1.47400 * 119.99631 * 180.02562 * 3 2 1 6 6 C 1.40197 * 120.19814 * 179.72610 * 5 3 2 7 7 O 1.35633 * 120.15321 * 0.25330 * 6 5 3 8 8 C 1.42901 * 117.00111 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47234 * 179.97438 * 8 7 6 10 10 H 1.09001 * 112.84929 * 314.67210 * 9 8 7 11 11 C 1.53777 * 113.60983 * 85.86366 * 9 8 7 12 12 C 1.53958 * 87.02124 * 139.95280 * 11 9 8 13 13 H 1.08997 * 113.53836 * 89.18604 * 12 11 9 14 14 O 1.42896 * 113.74372 * 220.05788 * 12 11 9 15 15 C 1.42905 * 113.99784 * 247.59475 * 14 12 11 16 16 C 1.52998 * 109.47238 * 59.99990 * 15 14 12 17 17 C 1.53003 * 109.46929 * 180.02562 * 15 14 12 18 18 C 1.52995 * 109.46932 * 299.99717 * 15 14 12 19 19 C 1.53783 * 113.61464 * 183.46919 * 9 8 7 20 20 C 1.38708 * 119.69370 * 180.27673 * 6 5 3 21 21 C 1.38053 * 120.08702 * 0.02562 * 20 6 5 22 22 C 1.50700 * 119.79739 * 179.97438 * 21 20 6 23 23 O 1.42900 * 109.47090 * 65.02167 * 22 21 20 24 24 Si 1.86302 * 109.47268 * 185.01858 * 22 21 20 25 25 C 1.38561 * 120.40532 * 359.97438 * 21 20 6 26 26 C 1.37762 * 120.30964 * 0.02562 * 25 21 20 27 27 H 1.08999 * 109.46959 * 299.99907 * 1 2 3 28 28 H 1.09003 * 109.47537 * 59.99744 * 1 2 3 29 29 H 1.09003 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47262 * 300.00086 * 8 7 6 31 31 H 1.09005 * 109.47025 * 60.00323 * 8 7 6 32 32 H 1.09007 * 113.61428 * 254.52715 * 11 9 8 33 33 H 1.08993 * 113.61949 * 25.43237 * 11 9 8 34 34 H 1.09002 * 109.46953 * 59.99723 * 16 15 14 35 35 H 1.08997 * 109.46925 * 180.02562 * 16 15 14 36 36 H 1.09000 * 109.46862 * 300.00269 * 16 15 14 37 37 H 1.09002 * 109.47245 * 59.99986 * 17 15 14 38 38 H 1.09000 * 109.46648 * 180.02562 * 17 15 14 39 39 H 1.09002 * 109.46910 * 300.00061 * 17 15 14 40 40 H 1.09005 * 109.47178 * 60.00583 * 18 15 14 41 41 H 1.09000 * 109.47059 * 179.97438 * 18 15 14 42 42 H 1.09002 * 109.47534 * 300.00193 * 18 15 14 43 43 H 1.09002 * 113.61176 * 334.57078 * 19 9 8 44 44 H 1.09000 * 113.61265 * 105.47011 * 19 9 8 45 45 H 1.07992 * 119.95835 * 180.02562 * 20 6 5 46 46 H 1.09005 * 109.47278 * 305.01977 * 22 21 20 47 47 H 0.96704 * 113.99771 * 179.97438 * 23 22 21 48 48 H 1.48498 * 109.99867 * 300.00180 * 24 22 21 49 49 H 1.48504 * 109.99775 * 61.31961 * 24 22 21 50 50 H 1.08000 * 119.85077 * 179.97438 * 25 21 20 51 51 H 1.07998 * 120.05455 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5357 1.2778 -0.0006 6 6 4.1765 2.5247 -0.0064 7 8 3.4448 3.6667 -0.0063 8 6 4.1669 4.8999 -0.0130 9 6 3.1798 6.0689 -0.0125 10 1 2.3642 5.9346 -0.7231 11 6 2.7105 6.4782 1.3936 12 6 2.8174 7.9382 0.9168 13 1 1.9019 8.3154 0.4613 14 8 3.3554 8.8261 1.8987 15 6 2.4166 9.7834 2.3932 16 6 1.2381 9.0542 3.0414 17 6 3.0982 10.6765 3.4319 18 6 1.9089 10.6449 1.2352 19 6 3.8566 7.4467 -0.1046 20 6 5.5622 2.5850 -0.0127 21 6 6.3056 1.4218 -0.0138 22 6 7.8108 1.4950 -0.0212 23 8 8.2649 2.0890 1.1966 24 14 8.5154 -0.2229 -0.1746 25 6 5.6763 0.1873 -0.0080 26 6 4.3010 0.1081 -0.0018 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.7978 4.9563 0.8740 31 1 4.7899 4.9513 -0.9059 32 1 1.6914 6.1660 1.6219 33 1 3.4189 6.2233 2.1818 34 1 1.5999 8.4405 3.8663 35 1 0.5219 9.7844 3.4181 36 1 0.7528 8.4183 2.3010 37 1 3.9376 11.1960 2.9697 38 1 2.3820 11.4063 3.8094 39 1 3.4603 10.0630 4.2569 40 1 1.4235 10.0090 0.4949 41 1 1.1926 11.3748 1.6123 42 1 2.7486 11.1644 0.7734 43 1 4.8790 7.4570 0.2732 44 1 3.7615 7.9152 -1.0842 45 1 6.0603 3.5433 -0.0167 46 1 8.1411 2.0998 -0.8658 47 1 9.2265 2.1678 1.2611 48 1 8.0725 -1.0576 0.9710 49 1 8.0764 -0.8397 -1.4521 50 1 6.2667 -0.7170 -0.0094 51 1 3.8148 -0.8562 0.0031 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16464166_14598386.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:17:34 Heat of formation + Delta-G solvation = -139.983693 kcal Electronic energy + Delta-G solvation = -31769.265460 eV Core-core repulsion = 27409.306978 eV Total energy + Delta-G solvation = -4359.958482 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.186 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.09509 -41.13958 -40.66279 -39.32518 -38.20700 -37.48238 -37.35199 -33.97013 -33.36536 -31.61353 -29.60470 -29.06510 -28.39234 -28.32463 -27.24125 -26.68201 -24.52845 -23.73828 -23.06086 -22.09636 -20.86845 -20.61552 -19.45556 -18.65367 -18.49563 -18.22096 -17.76372 -17.56504 -17.12267 -17.03149 -16.60579 -16.38424 -16.04063 -15.74410 -15.71451 -15.36164 -14.71072 -14.64293 -14.60963 -14.33382 -14.31406 -14.18008 -13.93697 -13.65266 -13.49504 -13.33278 -13.24121 -13.09097 -13.02891 -12.81833 -12.72372 -12.68758 -12.57258 -12.40318 -12.21860 -12.01839 -11.97796 -11.88792 -11.74148 -11.58785 -11.40501 -11.23806 -10.48647 -10.40798 -10.19247 -9.59782 -4.91274 -0.63742 0.06843 1.24999 1.30423 1.56199 1.68991 1.85022 1.99315 2.38332 2.69502 3.18295 3.39992 3.42801 3.49869 3.60088 3.65680 3.71452 3.73650 3.83533 3.87695 3.93948 4.01310 4.03936 4.07372 4.16118 4.20300 4.22131 4.24837 4.27051 4.39200 4.48054 4.56254 4.58322 4.62143 4.63893 4.71950 4.72507 4.75462 4.77249 4.81839 4.84390 4.88364 4.90191 4.95957 5.06230 5.08553 5.12197 5.19960 5.26534 5.29539 5.33946 5.37635 6.10456 6.37046 6.59971 6.87494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.507 3.493 4 O -0.518 6.518 5 C -0.187 4.187 6 C 0.187 3.813 7 O -0.299 6.299 8 C 0.061 3.939 9 C -0.104 4.104 10 H 0.100 0.900 11 C -0.150 4.150 12 C 0.062 3.938 13 H 0.098 0.902 14 O -0.378 6.378 15 C 0.098 3.902 16 C -0.175 4.175 17 C -0.138 4.138 18 C -0.176 4.176 19 C -0.115 4.115 20 C -0.197 4.197 21 C -0.005 4.005 22 C -0.089 4.089 23 O -0.561 6.561 24 Si 0.778 3.222 25 C -0.189 4.189 26 C -0.011 4.011 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.159 0.841 46 H 0.105 0.895 47 H 0.407 0.593 48 H -0.292 1.292 49 H -0.284 1.284 50 H 0.137 0.863 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 0.324 -1.886 5.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.277 6.277 3 C 0.353 3.647 4 O -0.408 6.408 5 C -0.189 4.189 6 C 0.138 3.862 7 O -0.211 6.211 8 C -0.013 4.013 9 C -0.122 4.122 10 H 0.118 0.882 11 C -0.187 4.187 12 C 0.005 3.995 13 H 0.116 0.884 14 O -0.298 6.298 15 C 0.059 3.941 16 C -0.232 4.232 17 C -0.196 4.196 18 C -0.234 4.234 19 C -0.153 4.153 20 C -0.215 4.215 21 C -0.005 4.005 22 C -0.198 4.198 23 O -0.372 6.372 24 Si 0.683 3.317 25 C -0.206 4.206 26 C -0.029 4.029 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.176 0.824 46 H 0.122 0.878 47 H 0.259 0.741 48 H -0.219 1.219 49 H -0.211 1.211 50 H 0.154 0.846 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.814 -0.144 -1.776 4.209 hybrid contribution -1.101 0.313 0.003 1.145 sum 2.712 0.169 -1.773 3.245 Atomic orbital electron populations 1.23550 0.74293 1.05823 1.02484 1.86516 1.25170 1.31705 1.84283 1.21059 0.89075 0.81727 0.72878 1.90870 1.67010 1.36596 1.46332 1.18615 0.89554 0.92700 1.18002 1.19206 0.90445 0.85809 0.90706 1.86305 1.35761 1.12842 1.86160 1.23155 0.94910 0.80417 1.02861 1.22246 0.98899 0.92404 0.98677 0.88220 1.23605 1.01784 0.96544 0.96807 1.23652 0.97822 0.88198 0.89852 0.88392 1.88005 1.37966 1.46287 1.57544 1.21690 0.89408 0.88788 0.94212 1.22452 0.98318 1.01197 1.01241 1.21789 1.01328 0.98835 0.97607 1.22446 1.02135 1.00465 0.98324 1.23175 0.99706 0.92690 0.99711 1.21230 0.90787 1.00879 1.08628 1.19859 0.95727 0.92484 0.92474 1.24991 0.91423 1.12142 0.91257 1.86445 1.29954 1.84128 1.36643 0.94217 0.88788 0.72062 0.76645 1.20974 0.94887 0.97328 1.07445 1.21410 0.93080 0.97740 0.90668 0.92129 0.91972 0.84749 0.90798 0.89659 0.91961 0.90071 0.92626 0.90434 0.92518 0.91972 0.89709 0.92483 0.92053 0.90378 0.91820 0.88570 0.88993 0.82374 0.87765 0.74102 1.21927 1.21051 0.84607 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 10.57 113.37 1.20 1.27 16 2 O -0.36 -2.82 9.82 -56.57 -0.56 -3.37 16 3 C 0.51 6.32 7.89 70.23 0.55 6.87 16 4 O -0.52 -9.22 14.95 26.81 0.40 -8.82 16 5 C -0.19 -1.85 5.89 -20.02 -0.12 -1.97 16 6 C 0.19 1.74 6.70 22.86 0.15 1.90 16 7 O -0.30 -3.14 8.21 -68.54 -0.56 -3.70 16 8 C 0.06 0.19 4.56 71.98 0.33 0.52 16 9 C -0.10 -0.26 4.00 -10.27 -0.04 -0.31 16 10 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 11 C -0.15 -0.68 7.48 31.18 0.23 -0.45 16 12 C 0.06 0.16 2.82 31.18 0.09 0.24 16 13 H 0.10 0.09 5.54 -2.39 -0.01 0.08 16 14 O -0.38 -2.05 10.00 -148.98 -1.49 -3.54 16 15 C 0.10 0.20 1.11 -10.79 -0.01 0.19 16 16 C -0.17 -0.25 8.39 71.98 0.60 0.35 16 17 C -0.14 -0.10 8.84 71.98 0.64 0.54 16 18 C -0.18 0.08 8.38 71.98 0.60 0.68 16 19 C -0.12 0.02 7.48 31.12 0.23 0.25 16 20 C -0.20 -0.97 8.65 22.34 0.19 -0.78 16 21 C -0.01 -0.02 5.39 -19.83 -0.11 -0.13 16 22 C -0.09 0.24 2.78 71.24 0.20 0.44 16 23 O -0.56 1.32 12.81 -148.98 -1.91 -0.59 16 24 Si 0.78 -3.33 29.83 68.60 2.05 -1.28 16 25 C -0.19 -0.85 8.64 22.23 0.19 -0.66 16 26 C -0.01 -0.06 9.61 22.53 0.22 0.16 16 27 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.07 0.15 7.40 -2.39 -0.02 0.13 16 31 H 0.09 -0.06 7.66 -2.38 -0.02 -0.08 16 32 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.08 0.50 7.92 -2.39 -0.02 0.48 16 34 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.06 0.11 7.02 -2.39 -0.02 0.09 16 37 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.06 -0.05 6.24 -2.38 -0.01 -0.06 16 41 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.10 -0.03 8.10 -2.39 -0.02 -0.05 16 44 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.16 0.15 6.30 -2.91 -0.02 0.13 16 46 H 0.10 -0.78 7.96 -2.38 -0.02 -0.79 16 47 H 0.41 -5.30 8.74 -74.05 -0.65 -5.95 16 48 H -0.29 -0.88 7.04 99.48 0.70 -0.18 16 49 H -0.28 -0.26 7.11 99.48 0.71 0.45 16 50 H 0.14 0.31 4.83 -2.91 -0.01 0.30 16 51 H 0.17 0.19 7.61 -2.91 -0.02 0.16 16 Total: 0.00 -20.95 410.11 3.40 -17.55 By element: Atomic # 1 Polarization: -5.67 SS G_CDS: 0.32 Total: -5.36 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.15 Total: 9.11 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -4.12 Total: -20.02 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.05 Total: -1.28 kcal Total: -20.95 3.40 -17.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_14598386.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.431 kcal (2) G-P(sol) polarization free energy of solvation -20.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds