Wall clock time and date at job start Mon Mar 8 2021 08:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34742 * 117.00312 * 2 1 4 4 O 1.21518 * 120.00043 * 359.97438 * 3 2 1 5 5 C 1.47397 * 120.00309 * 180.02562 * 3 2 1 6 6 C 1.40191 * 120.20390 * 180.02562 * 5 3 2 7 7 O 1.35640 * 120.14925 * 359.94798 * 6 5 3 8 8 C 1.42905 * 117.00084 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47641 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46862 * 305.00539 * 9 8 7 11 11 C 1.53006 * 109.47223 * 64.99686 * 9 8 7 12 12 C 1.52997 * 109.47164 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46978 * 299.99874 * 12 11 9 14 14 H 1.08992 * 109.47056 * 300.00064 * 13 12 11 15 15 O 1.42903 * 109.46797 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.46891 * 60.00410 * 13 12 11 17 17 C 1.52997 * 109.47482 * 184.99974 * 9 8 7 18 18 C 1.38708 * 119.69729 * 180.23139 * 6 5 3 19 19 C 1.38061 * 120.08373 * 359.48713 * 18 6 5 20 20 C 1.50697 * 119.79489 * 180.25626 * 19 18 6 21 21 O 1.42891 * 109.47504 * 300.25560 * 20 19 18 22 22 Si 1.86302 * 109.46824 * 180.25347 * 20 19 18 23 23 C 1.38563 * 120.40329 * 0.51264 * 19 18 6 24 24 C 1.37762 * 120.30936 * 359.74499 * 23 19 18 25 25 H 1.08999 * 109.47342 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46904 * 300.00555 * 1 2 3 27 27 H 1.09004 * 109.47017 * 60.00177 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99578 * 8 7 6 29 29 H 1.09004 * 109.46753 * 300.00647 * 8 7 6 30 30 H 1.09001 * 109.47002 * 60.00080 * 11 9 8 31 31 H 1.09000 * 109.47050 * 300.00346 * 11 9 8 32 32 H 1.09002 * 109.47045 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.47375 * 59.99966 * 12 11 9 34 34 H 0.96699 * 114.00345 * 60.00309 * 15 13 12 35 35 H 1.09004 * 109.47368 * 179.97438 * 16 13 12 36 36 H 1.09001 * 109.47372 * 59.99964 * 16 13 12 37 37 H 1.09002 * 109.47153 * 59.99783 * 17 9 8 38 38 H 1.09001 * 109.46832 * 299.99974 * 17 9 8 39 39 H 1.07995 * 119.96172 * 179.72359 * 18 6 5 40 40 H 1.09002 * 109.46974 * 60.26041 * 20 19 18 41 41 H 0.96698 * 114.00149 * 300.00422 * 21 20 19 42 42 H 1.48504 * 109.99813 * 180.02562 * 22 20 19 43 43 H 1.48498 * 110.00298 * 301.32209 * 22 20 19 44 44 H 1.07998 * 119.84655 * 179.71989 * 23 19 18 45 45 H 1.08004 * 120.05068 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.1767 2.5245 0.0000 7 8 3.4449 3.6666 0.0000 8 6 4.1671 4.8998 0.0000 9 6 3.1802 6.0688 0.0006 10 1 2.4950 5.9663 -0.8409 11 6 2.3857 6.0650 1.3082 12 6 1.3983 7.2337 1.3086 13 6 2.1669 8.5506 1.1827 14 1 2.8519 8.6534 2.0242 15 8 1.2447 9.6423 1.1836 16 6 2.9612 8.5545 -0.1250 17 6 3.9491 7.3856 -0.1251 18 6 5.5624 2.5849 -0.0054 19 6 6.3058 1.4215 -0.0006 20 6 7.8110 1.4947 -0.0007 21 8 8.2540 2.1911 -1.1671 22 14 8.5165 -0.2296 -0.0014 23 6 5.6764 0.1871 -0.0011 24 6 4.3010 0.1080 -0.0011 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 4.7941 4.9536 -0.8900 29 1 4.7941 4.9536 0.8899 30 1 3.0708 6.1674 2.1498 31 1 1.8379 5.1269 1.3978 32 1 0.8327 7.2312 2.2404 33 1 0.7133 7.1309 0.4670 34 1 0.7062 9.7016 1.9846 35 1 3.5084 9.4929 -0.2150 36 1 2.2762 8.4517 -0.9666 37 1 4.5150 7.3883 -1.0567 38 1 4.6341 7.4880 0.7165 39 1 6.0605 3.5431 -0.0096 40 1 8.1490 2.0251 0.8895 41 1 7.9886 1.7746 -1.9985 42 1 10.0004 -0.1712 -0.0009 43 1 8.0376 -0.9749 1.1904 44 1 6.2667 -0.7173 -0.0019 45 1 3.8148 -0.8564 -0.0018 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_16464166_16737256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:47 Heat of formation + Delta-G solvation = -185.892651 kcal Electronic energy + Delta-G solvation = -28070.853859 eV Core-core repulsion = 24019.979853 eV Total energy + Delta-G solvation = -4050.874006 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.154 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90472 -40.76013 -40.11336 -39.07427 -37.54726 -37.15409 -36.61926 -33.18571 -32.11483 -31.83632 -30.94641 -28.96153 -27.49347 -26.58155 -23.88885 -23.82281 -23.51274 -22.24827 -21.77057 -20.85711 -19.36652 -18.70749 -18.22485 -18.07232 -17.75053 -17.36938 -16.97946 -16.82683 -16.27518 -16.19529 -15.98854 -15.64799 -15.47370 -15.25899 -14.81318 -14.68389 -14.36275 -14.32122 -14.10838 -13.77519 -13.50416 -13.35854 -13.22950 -13.19905 -12.91394 -12.82194 -12.58832 -12.22794 -12.15787 -12.00824 -11.88041 -11.65849 -11.64304 -11.59160 -11.28519 -11.12046 -10.69955 -10.64161 -10.15811 -9.42784 -5.12267 -0.45525 0.22155 1.15176 1.51932 1.58749 1.75771 1.87917 1.98338 2.58281 3.16178 3.23179 3.40104 3.57913 3.60750 3.68512 3.73501 3.79725 3.94071 4.01232 4.05168 4.09335 4.21803 4.24546 4.27144 4.31206 4.31988 4.32192 4.39845 4.44165 4.46073 4.56218 4.62693 4.66070 4.77330 4.90554 4.94969 5.00805 5.03617 5.08843 5.14342 5.15894 5.18457 5.34112 5.41170 5.47091 5.49053 6.23464 6.41074 6.72045 6.90520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.506 3.494 4 O -0.485 6.485 5 C -0.162 4.162 6 C 0.197 3.803 7 O -0.278 6.278 8 C 0.056 3.944 9 C -0.085 4.085 10 H 0.087 0.913 11 C -0.111 4.111 12 C -0.151 4.151 13 C 0.103 3.897 14 H 0.054 0.946 15 O -0.569 6.569 16 C -0.111 4.111 17 C -0.110 4.110 18 C -0.198 4.198 19 C -0.042 4.042 20 C -0.077 4.077 21 O -0.537 6.537 22 Si 0.694 3.306 23 C -0.173 4.173 24 C -0.016 4.016 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.379 0.621 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.381 0.619 42 H -0.253 1.253 43 H -0.255 1.255 44 H 0.137 0.863 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -3.534 -0.534 3.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.350 3.650 4 O -0.372 6.372 5 C -0.164 4.164 6 C 0.149 3.851 7 O -0.189 6.189 8 C -0.019 4.019 9 C -0.104 4.104 10 H 0.105 0.895 11 C -0.149 4.149 12 C -0.189 4.189 13 C 0.044 3.956 14 H 0.072 0.928 15 O -0.375 6.375 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.217 4.217 19 C -0.043 4.043 20 C -0.187 4.187 21 O -0.342 6.342 22 Si 0.596 3.404 23 C -0.190 4.190 24 C -0.034 4.034 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.226 0.774 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.229 0.771 42 H -0.178 1.178 43 H -0.180 1.180 44 H 0.154 0.846 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.871 -3.262 -0.245 3.768 hybrid contribution -0.496 0.479 0.954 1.177 sum 1.375 -2.783 0.709 3.184 Atomic orbital electron populations 1.23284 0.75642 1.03865 1.02727 1.86516 1.23767 1.32647 1.84734 1.20819 0.88636 0.81732 0.73779 1.90906 1.66298 1.35588 1.44415 1.18468 0.89843 0.91863 1.16206 1.18990 0.89742 0.85866 0.90531 1.86319 1.34490 1.11971 1.86072 1.23071 0.95091 0.81920 1.01845 1.21197 0.97002 0.92016 1.00145 0.89512 1.21511 0.97962 0.99012 0.96402 1.22265 0.98832 0.94989 1.02796 1.21850 0.90313 0.85399 0.98029 0.92792 1.86513 1.55118 1.50413 1.45465 1.21440 0.97789 0.98515 0.97091 1.21488 0.97676 0.92678 1.02880 1.21064 0.91457 1.00094 1.09105 1.20441 0.96416 0.92918 0.94531 1.25220 0.91829 1.09948 0.91717 1.86517 1.78230 1.54128 1.15346 0.94537 0.80338 0.76660 0.88891 1.20892 0.94663 0.96862 1.06619 1.21298 0.93177 0.97514 0.91432 0.87852 0.91816 0.91742 0.91309 0.91598 0.92000 0.90327 0.91595 0.90895 0.77407 0.90830 0.90903 0.90729 0.91308 0.84028 0.86418 0.77114 1.17793 1.17955 0.84552 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.01 10.57 101.05 1.07 1.06 16 2 O -0.36 -0.76 9.82 -40.60 -0.40 -1.16 16 3 C 0.51 1.95 7.89 34.46 0.27 2.22 16 4 O -0.48 -3.13 14.95 -26.60 -0.40 -3.53 16 5 C -0.16 -0.36 5.89 -104.86 -0.62 -0.98 16 6 C 0.20 0.43 6.70 -38.67 -0.26 0.17 16 7 O -0.28 -0.82 7.74 -40.50 -0.31 -1.13 16 8 C 0.06 0.00 4.12 37.15 0.15 0.16 16 9 C -0.09 -0.01 2.43 -90.62 -0.22 -0.23 16 10 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 11 C -0.11 -0.07 5.10 -26.73 -0.14 -0.21 16 12 C -0.15 -0.07 5.54 -26.73 -0.15 -0.22 16 13 C 0.10 0.06 3.47 -26.73 -0.09 -0.03 16 14 H 0.05 0.00 8.14 -51.93 -0.42 -0.43 16 15 O -0.57 -1.01 13.32 -35.23 -0.47 -1.48 16 16 C -0.11 -0.04 5.58 -26.71 -0.15 -0.19 16 17 C -0.11 0.12 5.21 -26.71 -0.14 -0.02 16 18 C -0.20 -0.08 8.57 -39.47 -0.34 -0.41 16 19 C -0.04 0.03 5.40 -104.57 -0.56 -0.53 16 20 C -0.08 0.11 2.81 36.00 0.10 0.21 16 21 O -0.54 0.55 12.76 -35.23 -0.45 0.10 16 22 Si 0.69 -1.52 29.77 -169.99 -5.06 -6.58 16 23 C -0.17 0.23 8.64 -39.64 -0.34 -0.12 16 24 C -0.02 0.00 9.61 -39.18 -0.38 -0.37 16 25 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 26 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.07 -0.07 7.65 -51.93 -0.40 -0.47 16 29 H 0.07 -0.06 7.67 -51.93 -0.40 -0.46 16 30 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.08 0.21 7.82 -51.93 -0.41 -0.20 16 32 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 33 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.38 -0.77 9.08 45.56 0.41 -0.36 16 35 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 36 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 38 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.14 -0.08 6.30 -52.49 -0.33 -0.41 16 40 H 0.12 -0.13 7.96 -51.93 -0.41 -0.55 16 41 H 0.38 -1.82 8.70 45.56 0.40 -1.42 16 42 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 43 H -0.25 0.00 7.11 56.52 0.40 0.40 16 44 H 0.14 -0.47 4.85 -52.49 -0.25 -0.73 16 45 H 0.15 -0.31 7.61 -52.48 -0.40 -0.71 16 LS Contribution 365.43 15.07 5.51 5.51 Total: 0.00 -8.41 365.43 -9.43 -17.84 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: -6.06 Total: -10.08 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.79 Total: 0.51 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -2.03 Total: -7.20 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -5.06 Total: -6.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -8.41 -9.43 -17.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_16737256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.054 kcal (2) G-P(sol) polarization free energy of solvation -8.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds