Wall clock time and date at job start Mon Mar 8 2021 08:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34742 * 117.00312 * 2 1 4 4 O 1.21518 * 120.00043 * 359.97438 * 3 2 1 5 5 C 1.47397 * 120.00309 * 180.02562 * 3 2 1 6 6 C 1.40191 * 120.20390 * 180.02562 * 5 3 2 7 7 O 1.35640 * 120.14925 * 359.94798 * 6 5 3 8 8 C 1.42905 * 117.00084 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47641 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46862 * 305.00539 * 9 8 7 11 11 C 1.53006 * 109.47223 * 64.99686 * 9 8 7 12 12 C 1.52997 * 109.47164 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46978 * 299.99874 * 12 11 9 14 14 H 1.08992 * 109.47056 * 300.00064 * 13 12 11 15 15 O 1.42903 * 109.46797 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.46891 * 60.00410 * 13 12 11 17 17 C 1.52997 * 109.47482 * 184.99974 * 9 8 7 18 18 C 1.38708 * 119.69729 * 180.23139 * 6 5 3 19 19 C 1.38061 * 120.08373 * 359.48713 * 18 6 5 20 20 C 1.50697 * 119.79489 * 180.25626 * 19 18 6 21 21 O 1.42891 * 109.47504 * 300.25560 * 20 19 18 22 22 Si 1.86302 * 109.46824 * 180.25347 * 20 19 18 23 23 C 1.38563 * 120.40329 * 0.51264 * 19 18 6 24 24 C 1.37762 * 120.30936 * 359.74499 * 23 19 18 25 25 H 1.08999 * 109.47342 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46904 * 300.00555 * 1 2 3 27 27 H 1.09004 * 109.47017 * 60.00177 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99578 * 8 7 6 29 29 H 1.09004 * 109.46753 * 300.00647 * 8 7 6 30 30 H 1.09001 * 109.47002 * 60.00080 * 11 9 8 31 31 H 1.09000 * 109.47050 * 300.00346 * 11 9 8 32 32 H 1.09002 * 109.47045 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.47375 * 59.99966 * 12 11 9 34 34 H 0.96699 * 114.00345 * 60.00309 * 15 13 12 35 35 H 1.09004 * 109.47368 * 179.97438 * 16 13 12 36 36 H 1.09001 * 109.47372 * 59.99964 * 16 13 12 37 37 H 1.09002 * 109.47153 * 59.99783 * 17 9 8 38 38 H 1.09001 * 109.46832 * 299.99974 * 17 9 8 39 39 H 1.07995 * 119.96172 * 179.72359 * 18 6 5 40 40 H 1.09002 * 109.46974 * 60.26041 * 20 19 18 41 41 H 0.96698 * 114.00149 * 300.00422 * 21 20 19 42 42 H 1.48504 * 109.99813 * 180.02562 * 22 20 19 43 43 H 1.48498 * 110.00298 * 301.32209 * 22 20 19 44 44 H 1.07998 * 119.84655 * 179.71989 * 23 19 18 45 45 H 1.08004 * 120.05068 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.1767 2.5245 0.0000 7 8 3.4449 3.6666 0.0000 8 6 4.1671 4.8998 0.0000 9 6 3.1802 6.0688 0.0006 10 1 2.4950 5.9663 -0.8409 11 6 2.3857 6.0650 1.3082 12 6 1.3983 7.2337 1.3086 13 6 2.1669 8.5506 1.1827 14 1 2.8519 8.6534 2.0242 15 8 1.2447 9.6423 1.1836 16 6 2.9612 8.5545 -0.1250 17 6 3.9491 7.3856 -0.1251 18 6 5.5624 2.5849 -0.0054 19 6 6.3058 1.4215 -0.0006 20 6 7.8110 1.4947 -0.0007 21 8 8.2540 2.1911 -1.1671 22 14 8.5165 -0.2296 -0.0014 23 6 5.6764 0.1871 -0.0011 24 6 4.3010 0.1080 -0.0011 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 4.7941 4.9536 -0.8900 29 1 4.7941 4.9536 0.8899 30 1 3.0708 6.1674 2.1498 31 1 1.8379 5.1269 1.3978 32 1 0.8327 7.2312 2.2404 33 1 0.7133 7.1309 0.4670 34 1 0.7062 9.7016 1.9846 35 1 3.5084 9.4929 -0.2150 36 1 2.2762 8.4517 -0.9666 37 1 4.5150 7.3883 -1.0567 38 1 4.6341 7.4880 0.7165 39 1 6.0605 3.5431 -0.0096 40 1 8.1490 2.0251 0.8895 41 1 7.9886 1.7746 -1.9985 42 1 10.0004 -0.1712 -0.0009 43 1 8.0376 -0.9749 1.1904 44 1 6.2667 -0.7173 -0.0019 45 1 3.8148 -0.8564 -0.0018 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16464166_16737256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:46 Heat of formation + Delta-G solvation = -184.779391 kcal Electronic energy + Delta-G solvation = -28070.805585 eV Core-core repulsion = 24019.979853 eV Total energy + Delta-G solvation = -4050.825731 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.98676 -40.89885 -40.14290 -39.08190 -37.54223 -37.32158 -36.67850 -33.19502 -32.13227 -31.87231 -30.96115 -28.99163 -27.47568 -26.58658 -23.92527 -23.81997 -23.54913 -22.27877 -21.84648 -20.88948 -19.42274 -18.76476 -18.27603 -18.09745 -17.84065 -17.50727 -17.05424 -16.84977 -16.22949 -16.17647 -15.94380 -15.64608 -15.51493 -15.23189 -14.84754 -14.68016 -14.44219 -14.38505 -14.18051 -13.78692 -13.53598 -13.37958 -13.25150 -13.20306 -12.93083 -12.81619 -12.61362 -12.20720 -12.19467 -12.00237 -11.85811 -11.81520 -11.69543 -11.62434 -11.46933 -11.14409 -10.76771 -10.55134 -10.14809 -9.44684 -4.95802 -0.50365 0.24245 1.28590 1.40935 1.65893 1.67885 1.97020 2.01213 2.54979 3.17764 3.32064 3.54445 3.57631 3.60652 3.67023 3.71632 3.81037 3.95790 4.04235 4.07475 4.08327 4.22666 4.27141 4.28574 4.30237 4.30454 4.35942 4.42093 4.45488 4.46136 4.54697 4.68133 4.70886 4.77328 4.91169 4.94684 5.01215 5.03124 5.04704 5.09762 5.13015 5.21917 5.28453 5.30635 5.37805 5.54769 6.21611 6.69882 6.73480 6.81240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.503 3.497 4 O -0.523 6.523 5 C -0.186 4.186 6 C 0.181 3.819 7 O -0.302 6.302 8 C 0.054 3.946 9 C -0.082 4.082 10 H 0.068 0.932 11 C -0.106 4.106 12 C -0.146 4.146 13 C 0.103 3.897 14 H 0.066 0.934 15 O -0.589 6.589 16 C -0.113 4.113 17 C -0.101 4.101 18 C -0.201 4.201 19 C -0.038 4.038 20 C -0.081 4.081 21 O -0.551 6.551 22 Si 0.781 3.219 23 C -0.167 4.167 24 C -0.010 4.010 25 H 0.134 0.866 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.393 0.607 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.149 0.851 40 H 0.115 0.885 41 H 0.397 0.603 42 H -0.300 1.300 43 H -0.279 1.279 44 H 0.162 0.838 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -4.412 -0.460 5.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.350 3.650 4 O -0.413 6.413 5 C -0.188 4.188 6 C 0.133 3.867 7 O -0.214 6.214 8 C -0.021 4.021 9 C -0.100 4.100 10 H 0.086 0.914 11 C -0.144 4.144 12 C -0.184 4.184 13 C 0.044 3.956 14 H 0.084 0.916 15 O -0.398 6.398 16 C -0.151 4.151 17 C -0.139 4.139 18 C -0.220 4.220 19 C -0.038 4.038 20 C -0.190 4.190 21 O -0.359 6.359 22 Si 0.687 3.313 23 C -0.185 4.185 24 C -0.028 4.028 25 H 0.152 0.848 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.243 0.757 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.167 0.833 40 H 0.133 0.867 41 H 0.248 0.752 42 H -0.229 1.229 43 H -0.205 1.205 44 H 0.179 0.821 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.105 -4.148 -0.185 5.185 hybrid contribution -0.868 0.729 0.943 1.474 sum 2.238 -3.419 0.757 4.156 Atomic orbital electron populations 1.23516 0.74575 1.05733 1.02274 1.86512 1.24887 1.31793 1.84303 1.21228 0.89412 0.81615 0.72776 1.90882 1.67206 1.36742 1.46473 1.18652 0.89184 0.92979 1.17990 1.19216 0.90461 0.85707 0.91288 1.86298 1.35777 1.12900 1.86375 1.23184 0.95003 0.80964 1.02907 1.21149 0.96892 0.92963 0.99011 0.91361 1.21437 0.97982 0.97754 0.97221 1.22210 0.98616 0.95155 1.02422 1.21898 0.90285 0.84869 0.98513 0.91634 1.86477 1.55678 1.50790 1.46828 1.21473 0.97861 0.99150 0.96585 1.21440 0.97289 0.91125 1.04019 1.21156 0.90720 1.00957 1.09137 1.20607 0.96790 0.92857 0.93569 1.25361 0.91199 1.10707 0.91775 1.86487 1.78350 1.54827 1.16254 0.93542 0.76441 0.74466 0.86863 1.21149 0.94408 0.97541 1.05353 1.21518 0.93534 0.97373 0.90398 0.84762 0.92341 0.92222 0.90184 0.90433 0.90927 0.92816 0.90911 0.92569 0.75748 0.90724 0.92243 0.89663 0.89991 0.83311 0.86721 0.75230 1.22852 1.20548 0.82108 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.57 113.37 1.20 1.21 16 2 O -0.36 -1.75 9.82 -56.52 -0.55 -2.31 16 3 C 0.50 4.70 7.89 70.23 0.55 5.26 16 4 O -0.52 -8.16 14.95 26.78 0.40 -7.76 16 5 C -0.19 -0.99 5.89 -20.02 -0.12 -1.11 16 6 C 0.18 0.97 6.70 22.86 0.15 1.12 16 7 O -0.30 -2.32 7.74 -68.62 -0.53 -2.85 16 8 C 0.05 0.05 4.12 71.98 0.30 0.34 16 9 C -0.08 -0.11 2.43 -10.79 -0.03 -0.14 16 10 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 11 C -0.11 -0.29 5.10 30.60 0.16 -0.13 16 12 C -0.15 -0.33 5.54 30.59 0.17 -0.16 16 13 C 0.10 0.17 3.47 30.59 0.11 0.28 16 14 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 15 O -0.59 -2.41 13.32 -148.98 -1.98 -4.39 16 16 C -0.11 -0.15 5.58 30.61 0.17 0.02 16 17 C -0.10 0.22 5.21 30.61 0.16 0.38 16 18 C -0.20 -0.12 8.57 22.34 0.19 0.07 16 19 C -0.04 0.09 5.40 -19.83 -0.11 -0.02 16 20 C -0.08 0.32 2.81 71.23 0.20 0.53 16 21 O -0.55 1.80 12.76 -148.98 -1.90 -0.10 16 22 Si 0.78 -4.38 29.77 68.60 2.04 -2.34 16 23 C -0.17 0.69 8.64 22.23 0.19 0.88 16 24 C -0.01 0.01 9.61 22.53 0.22 0.23 16 25 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 28 H 0.08 -0.15 7.65 -2.39 -0.02 -0.17 16 29 H 0.08 -0.15 7.67 -2.39 -0.02 -0.16 16 30 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.05 0.43 7.82 -2.39 -0.02 0.41 16 32 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.39 -1.45 9.08 -74.06 -0.67 -2.12 16 35 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.15 -0.22 6.30 -2.91 -0.02 -0.24 16 40 H 0.12 -0.37 7.96 -2.39 -0.02 -0.39 16 41 H 0.40 -4.40 8.70 -74.06 -0.64 -5.04 16 42 H -0.30 -0.75 7.11 99.48 0.71 -0.04 16 43 H -0.28 0.40 7.11 99.48 0.71 1.11 16 44 H 0.16 -1.51 4.85 -2.91 -0.01 -1.52 16 45 H 0.17 -0.92 7.61 -2.91 -0.02 -0.94 16 Total: 0.00 -21.44 365.43 0.72 -20.72 By element: Atomic # 1 Polarization: -9.45 SS G_CDS: -0.26 Total: -9.72 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 3.51 Total: 8.75 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -4.57 Total: -17.42 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.04 Total: -2.34 kcal Total: -21.44 0.72 -20.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_16737256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.057 kcal (2) G-P(sol) polarization free energy of solvation -21.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds