Wall clock time and date at job start Mon Mar 8 2021 08:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34752 * 117.00115 * 2 1 4 4 O 1.21513 * 119.99723 * 359.97438 * 3 2 1 5 5 C 1.47394 * 120.00285 * 179.97438 * 3 2 1 6 6 C 1.40196 * 120.19848 * 179.71895 * 5 3 2 7 7 O 1.35639 * 120.15558 * 0.02562 * 6 5 3 8 8 C 1.42893 * 117.00191 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47198 * 180.02562 * 8 7 6 10 10 H 1.08992 * 112.84982 * 45.33026 * 9 8 7 11 11 C 1.53781 * 113.61246 * 176.52869 * 9 8 7 12 12 C 1.53781 * 87.08205 * 89.11499 * 11 9 8 13 13 O 1.42896 * 113.61683 * 270.79712 * 12 11 9 14 14 C 1.42900 * 113.99778 * 294.79253 * 13 12 11 15 15 C 1.53005 * 113.61527 * 139.97446 * 12 11 9 16 16 F 1.39902 * 109.46729 * 54.71788 * 15 12 11 17 17 F 1.39898 * 109.47078 * 174.71079 * 15 12 11 18 18 F 1.39901 * 109.47390 * 294.71401 * 15 12 11 19 19 C 1.53780 * 113.61125 * 274.13381 * 9 8 7 20 20 C 1.38711 * 119.69255 * 179.79382 * 6 5 3 21 21 C 1.38059 * 120.08731 * 0.46868 * 20 6 5 22 22 C 1.50697 * 119.79700 * 179.76614 * 21 20 6 23 23 O 1.42900 * 109.47250 * 300.01719 * 22 21 20 24 24 Si 1.86305 * 109.47022 * 180.02562 * 22 21 20 25 25 C 1.38569 * 120.40315 * 359.78332 * 21 20 6 26 26 C 1.37763 * 120.30675 * 359.97438 * 25 21 20 27 27 H 1.08995 * 109.46877 * 60.00275 * 1 2 3 28 28 H 1.08999 * 109.47308 * 300.00462 * 1 2 3 29 29 H 1.09000 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47270 * 299.99675 * 8 7 6 31 31 H 1.09003 * 109.47584 * 60.00059 * 8 7 6 32 32 H 1.09000 * 113.61097 * 203.65981 * 11 9 8 33 33 H 1.08997 * 113.62078 * 334.48172 * 11 9 8 34 34 H 1.09000 * 109.46970 * 302.48244 * 14 13 12 35 35 H 1.08995 * 109.47481 * 62.48857 * 14 13 12 36 36 H 1.09006 * 109.46692 * 182.49217 * 14 13 12 37 37 H 1.09004 * 113.61714 * 25.43852 * 19 9 8 38 38 H 1.09004 * 113.61229 * 156.33443 * 19 9 8 39 39 H 1.07998 * 119.95587 * 180.22762 * 20 6 5 40 40 H 1.09004 * 109.47461 * 60.01843 * 22 21 20 41 41 H 0.96698 * 114.00571 * 179.97438 * 23 22 21 42 42 H 1.48498 * 109.99859 * 59.99594 * 24 22 21 43 43 H 1.48496 * 109.99886 * 181.31911 * 24 22 21 44 44 H 1.07996 * 119.84634 * 179.97438 * 25 21 20 45 45 H 1.07992 * 120.04876 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.1764 2.5248 -0.0054 7 8 3.4447 3.6668 -0.0112 8 6 4.1667 4.8999 -0.0164 9 6 3.1796 6.0689 -0.0219 10 1 2.3669 5.9399 0.6928 11 6 3.8568 7.4473 0.0575 12 6 3.9150 7.4199 -1.4789 13 8 5.1014 6.8140 -1.9961 14 6 6.2995 7.5320 -1.6946 15 6 3.6060 8.7704 -2.1283 16 9 4.4584 9.7468 -1.6017 17 9 3.8001 8.6785 -3.5107 18 9 2.2772 9.1208 -1.8662 19 6 2.7050 6.4678 -1.4292 20 6 5.5622 2.5852 -0.0004 21 6 6.3057 1.4219 0.0005 22 6 7.8109 1.4952 0.0005 23 8 8.2540 2.1906 -1.1665 24 14 8.5166 -0.2290 0.0011 25 6 5.6764 0.1874 0.0011 26 6 4.3010 0.1082 0.0012 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 4.7931 4.9580 0.8737 31 1 4.7943 4.9498 -0.9063 32 1 3.2102 8.2291 0.4560 33 1 4.8372 7.4255 0.5334 34 1 6.2210 8.5483 -2.0806 35 1 6.4422 7.5635 -0.6145 36 1 7.1494 7.0317 -2.1590 37 1 2.7566 5.6553 -2.1540 38 1 1.7440 6.9823 -1.4363 39 1 6.0602 3.5435 -0.0013 40 1 8.1489 2.0265 0.8903 41 1 9.2150 2.2760 -1.2325 42 1 8.0632 -0.9638 -1.2071 43 1 10.0000 -0.1707 0.0333 44 1 6.2668 -0.7169 0.0014 45 1 3.8149 -0.8561 0.0012 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16464166_17321602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:26:36 Heat of formation + Delta-G solvation = -271.753067 kcal Electronic energy + Delta-G solvation = -36478.226184 eV Core-core repulsion = 31015.267064 eV Total energy + Delta-G solvation = -5462.959120 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.30335 -48.83476 -48.77281 -42.05113 -41.43769 -40.59021 -39.06909 -37.61973 -37.35137 -37.02230 -33.27982 -31.57573 -30.39132 -28.98836 -28.23233 -27.67243 -26.96352 -26.80034 -23.97335 -23.63548 -23.02240 -21.95013 -20.59510 -19.87708 -19.59600 -19.33238 -19.26414 -18.58683 -18.49602 -18.00823 -17.47782 -17.28492 -17.02034 -16.79376 -16.50099 -16.21043 -15.97372 -15.76291 -15.70046 -15.62607 -15.57723 -15.24428 -15.13213 -14.94897 -14.88231 -14.58731 -14.51093 -14.25303 -14.08085 -13.97433 -13.81284 -13.66745 -13.28898 -13.17701 -12.99722 -12.74160 -12.71086 -12.45219 -12.38417 -12.02070 -11.88336 -11.78809 -11.77414 -11.66180 -11.43880 -10.84627 -10.60452 -10.09527 -9.42619 -4.88363 -0.47890 0.26436 1.27196 1.44106 1.48342 1.64709 1.68771 1.90310 1.99881 2.04926 2.51133 2.54151 2.58305 2.84657 3.23176 3.26715 3.33683 3.44026 3.52901 3.66496 3.72777 3.82732 4.04501 4.11636 4.21334 4.21624 4.23936 4.31486 4.32406 4.33259 4.34004 4.41781 4.46104 4.47947 4.61406 4.65662 4.70916 4.73179 4.76318 4.78686 4.94118 4.98797 5.05590 5.26140 5.33143 5.55299 5.68316 6.21498 6.57234 6.72727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.505 3.495 4 O -0.521 6.521 5 C -0.186 4.186 6 C 0.182 3.818 7 O -0.300 6.300 8 C 0.061 3.939 9 C -0.094 4.094 10 H 0.107 0.893 11 C -0.128 4.128 12 C 0.038 3.962 13 O -0.347 6.347 14 C 0.004 3.996 15 C 0.434 3.566 16 F -0.182 7.182 17 F -0.188 7.188 18 F -0.177 7.177 19 C -0.115 4.115 20 C -0.200 4.200 21 C -0.001 4.001 22 C -0.093 4.093 23 O -0.555 6.555 24 Si 0.767 3.233 25 C -0.169 4.169 26 C -0.011 4.011 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.149 0.851 40 H 0.107 0.893 41 H 0.398 0.602 42 H -0.295 1.295 43 H -0.285 1.285 44 H 0.160 0.840 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -3.495 5.842 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.351 3.649 4 O -0.411 6.411 5 C -0.188 4.188 6 C 0.134 3.866 7 O -0.212 6.212 8 C -0.013 4.013 9 C -0.112 4.112 10 H 0.126 0.874 11 C -0.165 4.165 12 C -0.004 4.004 13 O -0.265 6.265 14 C -0.091 4.091 15 C 0.379 3.621 16 F -0.163 7.163 17 F -0.170 7.170 18 F -0.158 7.158 19 C -0.153 4.153 20 C -0.218 4.218 21 C -0.001 4.001 22 C -0.201 4.201 23 O -0.366 6.366 24 Si 0.672 3.328 25 C -0.186 4.186 26 C -0.029 4.029 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.167 0.833 40 H 0.125 0.875 41 H 0.249 0.751 42 H -0.223 1.223 43 H -0.213 1.213 44 H 0.177 0.823 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.825 -3.826 5.197 7.502 hybrid contribution 0.507 1.815 -1.128 2.197 sum 4.332 -2.011 4.069 6.275 Atomic orbital electron populations 1.23520 0.74532 1.05718 1.02352 1.86515 1.24931 1.31766 1.84303 1.21157 0.89266 0.81653 0.72788 1.90868 1.67125 1.36686 1.46458 1.18639 0.89343 0.92850 1.17987 1.19159 0.90365 0.85654 0.91378 1.86248 1.35647 1.12787 1.86485 1.23004 0.94403 0.80426 1.03489 1.22005 0.99010 0.92385 0.97786 0.87431 1.23601 1.04735 0.97491 0.90719 1.24190 0.91313 0.88555 0.96349 1.88086 1.13561 1.47991 1.76840 1.23304 0.86018 0.97214 1.02606 1.21485 0.74529 0.89043 0.77044 1.93178 1.70465 1.66464 1.86206 1.93186 1.94797 1.96476 1.32521 1.93173 1.35744 1.93204 1.93684 1.23339 0.95331 0.98064 0.98528 1.21147 0.90856 1.00830 1.08999 1.19635 0.94653 0.92900 0.92900 1.25134 0.93464 1.10115 0.91380 1.86549 1.29231 1.77413 1.43363 0.94040 0.77287 0.74899 0.86572 1.21096 0.94554 0.97466 1.05522 1.21491 0.93293 0.97531 0.90539 0.92362 0.92018 0.84841 0.89486 0.90039 0.85744 0.86992 0.93521 0.90792 0.87119 0.90008 0.86013 0.83300 0.87499 0.75111 1.22261 1.21257 0.82343 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.57 113.37 1.20 1.22 16 2 O -0.36 -1.93 9.82 -56.63 -0.56 -2.49 16 3 C 0.51 4.99 7.89 70.23 0.55 5.55 16 4 O -0.52 -8.13 14.95 26.80 0.40 -7.73 16 5 C -0.19 -1.23 5.89 -20.02 -0.12 -1.35 16 6 C 0.18 1.22 6.70 22.86 0.15 1.37 16 7 O -0.30 -2.43 8.21 -68.60 -0.56 -2.99 16 8 C 0.06 0.07 4.33 71.98 0.31 0.38 16 9 C -0.09 0.06 4.19 -10.27 -0.04 0.01 16 10 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 11 C -0.13 0.52 6.52 31.12 0.20 0.73 16 12 C 0.04 0.04 0.85 -10.17 -0.01 0.03 16 13 O -0.35 -0.77 8.34 -148.98 -1.24 -2.01 16 14 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 15 C 0.43 1.76 2.51 71.98 0.18 1.94 16 16 F -0.18 -0.65 15.24 44.97 0.69 0.03 16 17 F -0.19 -1.56 17.09 44.97 0.77 -0.79 16 18 F -0.18 -0.78 15.82 44.97 0.71 -0.06 16 19 C -0.12 -0.20 6.92 31.21 0.22 0.01 16 20 C -0.20 -0.49 8.58 22.34 0.19 -0.30 16 21 C 0.00 0.00 5.43 -19.83 -0.11 -0.11 16 22 C -0.09 0.37 2.80 71.23 0.20 0.57 16 23 O -0.56 0.63 12.74 -148.98 -1.90 -1.27 16 24 Si 0.77 -3.96 29.77 68.60 2.04 -1.92 16 25 C -0.17 0.25 8.64 22.24 0.19 0.44 16 26 C -0.01 -0.01 9.61 22.53 0.22 0.21 16 27 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H 0.09 -0.27 7.65 -2.39 -0.02 -0.29 16 31 H 0.08 0.17 5.62 -2.39 -0.01 0.15 16 32 H 0.12 -0.76 8.06 -2.39 -0.02 -0.78 16 33 H 0.11 -0.84 6.70 -2.39 -0.02 -0.86 16 34 H 0.05 -0.04 6.25 -2.39 -0.01 -0.06 16 35 H 0.07 -0.50 6.76 -2.39 -0.02 -0.52 16 36 H 0.11 -0.53 8.14 -2.38 -0.02 -0.55 16 37 H 0.08 0.42 8.10 -2.39 -0.02 0.40 16 38 H 0.12 0.02 7.01 -2.38 -0.02 0.00 16 39 H 0.15 -0.03 6.30 -2.91 -0.02 -0.05 16 40 H 0.11 -0.94 7.96 -2.38 -0.02 -0.96 16 41 H 0.40 -3.63 8.74 -74.06 -0.65 -4.27 16 42 H -0.30 -0.66 7.11 99.48 0.71 0.05 16 43 H -0.29 0.23 7.11 99.48 0.71 0.94 16 44 H 0.16 -1.04 4.85 -2.91 -0.01 -1.05 16 45 H 0.17 -0.69 7.61 -2.91 -0.02 -0.71 16 Total: 0.00 -22.00 380.38 5.33 -16.67 By element: Atomic # 1 Polarization: -9.78 SS G_CDS: 0.46 Total: -9.31 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 4.52 Total: 11.88 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -3.86 Total: -16.48 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 2.17 Total: -0.83 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.04 Total: -1.92 kcal Total: -22.00 5.33 -16.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_17321602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.087 kcal (2) G-P(sol) polarization free energy of solvation -21.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds