Wall clock time and date at job start Mon Mar 8 2021 09:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34746 * 116.99810 * 2 1 4 4 O 1.21511 * 120.00033 * 359.97438 * 3 2 1 5 5 C 1.47409 * 120.00089 * 179.97438 * 3 2 1 6 6 C 1.39730 * 120.19419 * 0.02699 * 5 3 2 7 7 C 1.37810 * 119.89707 * 179.97438 * 6 5 3 8 8 C 1.38511 * 120.31169 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.79929 * 180.02562 * 8 7 6 10 10 O 1.42903 * 109.47153 * 120.00165 * 9 8 7 11 11 Si 1.86298 * 109.47165 * 359.97438 * 9 8 7 12 12 H 1.48497 * 109.46831 * 60.00010 * 11 9 8 13 13 H 1.48506 * 109.47069 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47105 * 300.00370 * 11 9 8 15 15 C 1.38101 * 120.40416 * 359.72534 * 8 7 6 16 16 C 1.38665 * 120.08594 * 0.55133 * 15 8 7 17 17 O 1.35644 * 120.15622 * 179.72331 * 16 15 8 18 18 C 1.42903 * 116.99549 * 359.72909 * 17 16 15 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.47145 * 179.97438 * 20 19 18 22 22 Si 1.63096 * 114.00209 * 179.97438 * 21 20 19 23 23 C 1.86308 * 109.46996 * 299.99934 * 22 21 20 24 24 C 1.86296 * 109.47317 * 59.99785 * 22 21 20 25 25 C 1.86303 * 109.47337 * 179.97438 * 22 21 20 26 26 C 1.53000 * 109.47258 * 59.99942 * 25 22 21 27 27 C 1.53000 * 109.46873 * 179.97438 * 25 22 21 28 28 C 1.52999 * 109.46706 * 299.99646 * 25 22 21 29 29 H 1.09008 * 109.46815 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47484 * 300.00326 * 1 2 3 31 31 H 1.09004 * 109.47202 * 60.00476 * 1 2 3 32 32 H 1.07996 * 120.05059 * 359.97438 * 6 5 3 33 33 H 1.08003 * 119.83747 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47264 * 240.00062 * 9 8 7 35 35 H 0.96702 * 113.99511 * 299.99730 * 10 9 8 36 36 H 1.07999 * 119.96078 * 180.27958 * 15 8 7 37 37 H 1.09002 * 109.47382 * 59.99849 * 18 17 16 38 38 H 1.09001 * 109.46938 * 299.99835 * 18 17 16 39 39 H 1.09001 * 109.47194 * 299.99575 * 19 18 17 40 40 H 1.08992 * 109.47399 * 59.99748 * 19 18 17 41 41 H 1.09001 * 109.47109 * 299.99380 * 20 19 18 42 42 H 1.09002 * 109.47508 * 59.99571 * 20 19 18 43 43 H 1.08993 * 109.46878 * 60.00010 * 23 22 21 44 44 H 1.09008 * 109.46916 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.46987 * 299.99507 * 23 22 21 46 46 H 1.09001 * 109.47243 * 60.00077 * 24 22 21 47 47 H 1.09000 * 109.47509 * 180.02562 * 24 22 21 48 48 H 1.09006 * 109.47013 * 300.00283 * 24 22 21 49 49 H 1.08998 * 109.46855 * 60.00030 * 26 25 22 50 50 H 1.08994 * 109.46913 * 180.02562 * 26 25 22 51 51 H 1.09005 * 109.46550 * 300.00337 * 26 25 22 52 52 H 1.09000 * 109.47503 * 60.00004 * 27 25 22 53 53 H 1.09006 * 109.46847 * 179.97438 * 27 25 22 54 54 H 1.09001 * 109.47185 * 299.99608 * 27 25 22 55 55 H 1.09000 * 109.46985 * 60.00373 * 28 25 22 56 56 H 1.09006 * 109.46759 * 180.02562 * 28 25 22 57 57 H 1.09000 * 109.47380 * 299.99818 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4018 2.2197 -0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3008 0.1086 0.0005 7 6 5.6766 0.1879 0.0005 8 6 6.3057 1.4219 0.0000 9 6 7.8109 1.4952 -0.0005 10 8 8.2535 2.1910 -1.1676 11 14 8.5166 -0.2289 0.0004 12 1 8.0558 -0.9530 -1.2115 13 1 9.9999 -0.1567 -0.0008 14 1 8.0566 -0.9515 1.2135 15 6 5.5620 2.5856 -0.0062 16 6 4.1766 2.5252 -0.0004 17 8 3.4448 3.6672 -0.0009 18 6 4.1669 4.9004 -0.0014 19 6 3.1797 6.0693 -0.0012 20 6 3.9528 7.3897 -0.0024 21 8 3.0309 8.4815 -0.0028 22 14 3.7412 9.9496 -0.0034 23 6 4.8023 10.1267 1.5177 24 6 4.8022 10.1255 -1.5246 25 6 2.4306 11.2737 -0.0047 26 6 1.5588 11.1295 1.2443 27 6 3.0971 12.6509 -0.0047 28 6 1.5598 11.1280 -1.2542 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 3.8147 -0.8558 0.0005 33 1 6.2670 -0.7165 0.0001 34 1 8.1492 2.0263 0.8892 35 1 7.9878 1.7738 -1.9986 36 1 6.0599 3.5439 -0.0111 37 1 4.7939 4.9540 -0.8914 38 1 4.7939 4.9546 0.8886 39 1 2.5524 6.0153 -0.8909 40 1 2.5531 6.0156 0.8890 41 1 4.5804 7.4440 0.8871 42 1 4.5792 7.4432 -0.8928 43 1 5.5691 9.3521 1.5179 44 1 5.2775 11.1078 1.5170 45 1 4.1815 10.0239 2.4077 46 1 4.1815 10.0219 -2.4146 47 1 5.2773 11.1065 -1.5248 48 1 5.5691 9.3508 -1.5243 49 1 2.1792 11.2333 2.1344 50 1 0.7917 11.9039 1.2433 51 1 1.0840 10.1483 1.2446 52 1 3.7185 12.7539 -0.8942 53 1 2.3303 13.4256 -0.0059 54 1 3.7172 12.7544 0.8858 55 1 1.0850 10.1468 -1.2538 56 1 0.7933 11.9030 -1.2552 57 1 2.1809 11.2307 -2.1440 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16464166_18527726.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:00:02 Heat of formation + Delta-G solvation = -226.402422 kcal Electronic energy + Delta-G solvation = -33883.092560 eV Core-core repulsion = 29367.406099 eV Total energy + Delta-G solvation = -4515.686461 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 384.202 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96196 -40.80004 -39.34495 -38.20714 -37.46327 -37.29805 -36.83808 -33.74263 -32.93897 -31.17080 -29.38015 -29.06575 -28.98966 -27.84734 -27.45598 -27.38817 -26.58537 -23.84974 -23.60002 -22.62174 -21.75791 -20.42668 -19.44875 -18.77443 -18.39590 -17.85382 -17.65085 -17.57008 -17.28276 -16.57178 -16.29723 -16.07010 -15.99186 -15.94993 -15.80318 -15.20536 -15.09877 -14.87211 -14.76463 -14.52160 -14.49244 -14.40482 -13.98886 -13.95279 -13.52846 -13.48658 -13.36841 -13.18227 -13.15895 -12.97103 -12.96231 -12.93747 -12.89643 -12.78728 -12.40487 -12.36304 -12.23406 -12.06580 -11.91286 -11.81886 -11.71409 -11.69310 -11.63816 -11.48709 -11.37374 -11.30194 -10.52002 -10.31137 -10.12310 -10.06128 -9.45403 -0.50254 0.23450 1.17891 1.40001 1.42110 1.53082 1.58360 1.65872 1.77789 1.97125 2.05607 2.13120 2.51974 2.54633 3.34014 3.57451 3.64842 3.76431 3.85576 3.88846 4.01787 4.06718 4.08907 4.11614 4.12248 4.28383 4.30242 4.31582 4.33567 4.37830 4.45686 4.46583 4.57639 4.67910 4.72843 4.75153 4.75748 4.78492 4.79994 4.81260 4.82332 4.91978 4.98924 5.02433 5.02456 5.07008 5.08208 5.08399 5.20681 5.21132 5.30129 5.33807 5.39590 5.44087 5.53298 5.54624 5.60879 5.64780 6.22935 6.68990 6.69302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.503 3.497 4 O -0.523 6.523 5 C -0.187 4.187 6 C -0.011 4.011 7 C -0.180 4.180 8 C -0.037 4.037 9 C -0.085 4.085 10 O -0.547 6.547 11 Si 0.981 3.019 12 H -0.248 1.248 13 H -0.277 1.277 14 H -0.252 1.252 15 C -0.195 4.195 16 C 0.182 3.818 17 O -0.306 6.306 18 C 0.047 3.953 19 C -0.119 4.119 20 C 0.083 3.917 21 O -0.644 6.644 22 Si 1.313 2.687 23 C -0.516 4.516 24 C -0.516 4.516 25 C -0.385 4.385 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.137 4.137 29 H 0.134 0.866 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.391 0.609 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.061 0.939 50 H 0.047 0.953 51 H 0.052 0.948 52 H 0.064 0.936 53 H 0.049 0.951 54 H 0.064 0.936 55 H 0.052 0.948 56 H 0.047 0.953 57 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -2.722 -0.130 5.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.276 6.276 3 C 0.349 3.651 4 O -0.414 6.414 5 C -0.189 4.189 6 C -0.029 4.029 7 C -0.197 4.197 8 C -0.037 4.037 9 C -0.195 4.195 10 O -0.354 6.354 11 Si 0.805 3.195 12 H -0.171 1.171 13 H -0.202 1.202 14 H -0.176 1.176 15 C -0.214 4.214 16 C 0.134 3.866 17 O -0.218 6.218 18 C -0.027 4.027 19 C -0.157 4.157 20 C 0.008 3.992 21 O -0.603 6.603 22 Si 1.443 2.557 23 C -0.618 4.618 24 C -0.618 4.618 25 C -0.427 4.427 26 C -0.194 4.194 27 C -0.197 4.197 28 C -0.194 4.194 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.182 0.818 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.241 0.759 36 H 0.177 0.823 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.071 0.929 52 H 0.083 0.917 53 H 0.068 0.932 54 H 0.083 0.917 55 H 0.071 0.929 56 H 0.066 0.934 57 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.746 -2.951 0.307 5.597 hybrid contribution -0.749 0.809 -0.345 1.155 sum 3.997 -2.142 -0.038 4.535 Atomic orbital electron populations 1.23522 0.74553 1.05732 1.02339 1.86512 1.24930 1.31815 1.84307 1.21250 0.89451 0.81597 0.72762 1.90886 1.67219 1.36765 1.46495 1.18646 0.89122 0.93043 1.18045 1.21454 0.93507 0.97353 0.90585 1.21161 0.94619 0.97918 1.06038 1.20620 0.97206 0.92580 0.93335 1.25183 0.90531 1.10922 0.92848 1.86508 1.78348 1.54512 1.16056 0.85212 0.78625 0.73905 0.81772 1.17098 1.20229 1.17594 1.21209 0.90405 1.01191 1.08562 1.19213 0.90627 0.85447 0.91294 1.86285 1.36013 1.13060 1.86486 1.23044 0.95102 0.80791 1.03783 1.21456 0.98647 0.91482 1.04131 1.21989 0.89845 0.84749 1.02645 1.85322 1.50919 1.32363 1.91729 0.76251 0.60302 0.54084 0.65032 1.27064 1.11290 1.05440 1.17993 1.27068 1.11294 1.05430 1.18012 1.25951 1.09352 1.09785 0.97619 1.21541 0.99552 1.01438 0.96894 1.21596 1.00488 0.95220 1.02382 1.21540 0.99563 1.01433 0.96889 0.84773 0.92239 0.92220 0.81833 0.83343 0.84697 0.75938 0.82273 0.89454 0.89445 0.91205 0.91181 0.90476 0.90505 0.90665 0.90237 0.91292 0.91302 0.90240 0.90679 0.91963 0.93364 0.92879 0.91695 0.93213 0.91681 0.92870 0.93364 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 10.56 113.37 1.20 1.23 16 2 O -0.36 -2.08 9.82 -56.56 -0.56 -2.63 16 3 C 0.50 5.15 7.89 70.24 0.55 5.70 16 4 O -0.52 -8.73 14.95 26.80 0.40 -8.33 16 5 C -0.19 -1.12 5.89 -20.02 -0.12 -1.24 16 6 C -0.01 0.00 9.61 22.53 0.22 0.22 16 7 C -0.18 0.49 8.64 22.23 0.19 0.68 16 8 C -0.04 0.10 5.40 -19.83 -0.11 -0.01 16 9 C -0.08 0.47 2.81 71.24 0.20 0.67 16 10 O -0.55 2.38 12.76 -148.98 -1.90 0.48 16 11 Si 0.98 -5.13 25.05 68.60 1.72 -3.41 16 12 H -0.25 1.32 7.11 99.48 0.71 2.03 16 13 H -0.28 0.28 7.11 99.48 0.71 0.99 16 14 H -0.25 1.11 7.11 99.48 0.71 1.81 16 15 C -0.20 0.09 8.57 22.34 0.19 0.28 16 16 C 0.18 0.96 6.70 22.86 0.15 1.11 16 17 O -0.31 -2.42 8.21 -68.66 -0.56 -2.98 16 18 C 0.05 -0.01 4.74 71.98 0.34 0.33 16 19 C -0.12 -0.22 5.95 30.59 0.18 -0.03 16 20 C 0.08 -0.16 5.12 71.98 0.37 0.21 16 21 O -0.64 -1.12 8.56 -148.98 -1.28 -2.39 16 22 Si 1.31 -2.55 8.45 68.60 0.58 -1.97 16 23 C -0.52 1.16 8.50 113.37 0.96 2.13 16 24 C -0.52 1.13 8.50 113.37 0.96 2.09 16 25 C -0.38 -0.21 0.53 -10.79 -0.01 -0.22 16 26 C -0.14 -0.27 7.85 71.98 0.56 0.30 16 27 C -0.14 0.11 7.85 71.98 0.56 0.68 16 28 C -0.14 -0.27 7.85 71.98 0.56 0.30 16 29 H 0.13 -0.75 8.14 -2.38 -0.02 -0.77 16 30 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.16 -0.62 7.61 -2.91 -0.02 -0.64 16 33 H 0.15 -0.98 4.85 -2.91 -0.01 -1.00 16 34 H 0.14 -1.05 7.96 -2.39 -0.02 -1.07 16 35 H 0.39 -4.03 8.70 -74.06 -0.64 -4.67 16 36 H 0.16 -0.66 6.30 -2.91 -0.02 -0.68 16 37 H 0.09 -0.36 7.65 -2.39 -0.02 -0.38 16 38 H 0.09 -0.38 7.67 -2.39 -0.02 -0.40 16 39 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.08 -0.46 7.21 -2.39 -0.02 -0.47 16 42 H 0.08 -0.45 7.21 -2.39 -0.02 -0.46 16 43 H 0.07 -0.29 7.48 -2.39 -0.02 -0.31 16 44 H 0.08 -0.24 7.79 -2.38 -0.02 -0.26 16 45 H 0.07 -0.08 7.79 -2.39 -0.02 -0.09 16 46 H 0.07 -0.07 7.79 -2.39 -0.02 -0.09 16 47 H 0.08 -0.24 7.79 -2.39 -0.02 -0.25 16 48 H 0.07 -0.28 7.48 -2.38 -0.02 -0.30 16 49 H 0.06 0.01 7.80 -2.39 -0.02 -0.01 16 50 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.05 0.17 7.97 -2.38 -0.02 0.15 16 52 H 0.06 -0.17 7.79 -2.39 -0.02 -0.18 16 53 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 54 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 55 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 56 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 57 H 0.06 0.01 7.79 -2.39 -0.02 -0.01 16 Total: 0.00 -19.18 455.60 6.35 -12.83 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: 0.95 Total: -6.02 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.99 Total: 14.44 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -3.89 Total: -15.87 kcal Atomic # 14 Polarization: -7.68 SS G_CDS: 2.30 Total: -5.38 kcal Total: -19.18 6.35 -12.83 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_18527726.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.571 kcal (2) G-P(sol) polarization free energy of solvation -19.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds