Wall clock time and date at job start Mon Mar 8 2021 09:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34752 * 117.00223 * 2 1 4 4 O 1.21515 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.47401 * 120.00159 * 179.97438 * 3 2 1 6 6 C 1.39724 * 120.19904 * 0.02562 * 5 3 2 7 7 C 1.37805 * 119.90368 * 179.97438 * 6 5 3 8 8 C 1.38520 * 120.30650 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.79490 * 179.97438 * 8 7 6 10 10 O 1.42907 * 109.47033 * 120.00167 * 9 8 7 11 11 Si 1.86297 * 109.47597 * 0.02562 * 9 8 7 12 12 H 1.48498 * 109.47018 * 59.99471 * 11 9 8 13 13 H 1.48496 * 109.47382 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46690 * 300.00044 * 11 9 8 15 15 C 1.38095 * 120.40158 * 359.71669 * 8 7 6 16 16 C 1.38669 * 120.09025 * 0.55947 * 15 8 7 17 17 O 1.35635 * 120.15384 * 179.72152 * 16 15 8 18 18 C 1.42905 * 117.00063 * 359.72243 * 17 16 15 19 19 C 1.50701 * 109.47046 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00243 * 89.99998 * 19 18 17 21 21 C 1.38234 * 120.00240 * 180.02562 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 23 23 Si 1.86796 * 120.00338 * 179.72477 * 22 21 20 24 24 C 1.86298 * 109.47345 * 89.99399 * 23 22 21 25 25 C 1.86292 * 109.47215 * 209.99657 * 23 22 21 26 26 C 1.86304 * 109.46695 * 329.99459 * 23 22 21 27 27 C 1.38238 * 119.99752 * 359.47832 * 22 21 20 28 28 C 1.38234 * 120.00005 * 0.52168 * 27 22 21 29 29 H 1.08998 * 109.46854 * 60.00068 * 1 2 3 30 30 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47078 * 300.00021 * 1 2 3 32 32 H 1.07998 * 120.04907 * 0.02562 * 6 5 3 33 33 H 1.07996 * 119.84605 * 180.02562 * 7 6 5 34 34 H 1.09005 * 109.47190 * 239.99439 * 9 8 7 35 35 H 0.96694 * 113.99611 * 300.00132 * 10 9 8 36 36 H 1.08008 * 119.95515 * 180.27817 * 15 8 7 37 37 H 1.08996 * 109.47095 * 59.99979 * 18 17 16 38 38 H 1.08999 * 109.47350 * 299.99915 * 18 17 16 39 39 H 1.07999 * 119.99751 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47461 * 60.00145 * 24 23 22 42 42 H 1.08995 * 109.47041 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.46941 * 300.00096 * 24 23 22 44 44 H 1.08997 * 109.47556 * 59.99827 * 25 23 22 45 45 H 1.09003 * 109.47107 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47298 * 299.99936 * 25 23 22 47 47 H 1.09004 * 109.47045 * 60.00345 * 26 23 22 48 48 H 1.09003 * 109.47110 * 180.02562 * 26 23 22 49 49 H 1.09000 * 109.47158 * 300.00133 * 26 23 22 50 50 H 1.07999 * 119.99927 * 180.24100 * 27 22 21 51 51 H 1.08001 * 120.00310 * 179.72165 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5358 1.2778 0.0006 6 6 4.3008 0.1086 0.0006 7 6 5.6766 0.1878 0.0006 8 6 6.3057 1.4219 0.0011 9 6 7.8110 1.4950 0.0017 10 8 8.2545 2.1914 -1.1648 11 14 8.5167 -0.2291 0.0007 12 1 8.0566 -0.9516 -1.2123 13 1 9.9999 -0.1569 0.0019 14 1 8.0558 -0.9531 1.2126 15 6 5.5620 2.5854 -0.0042 16 6 4.1766 2.5251 0.0015 17 8 3.4449 3.6671 0.0020 18 6 4.1670 4.9003 0.0025 19 6 3.1947 6.0517 0.0036 20 6 2.7492 6.5791 1.2012 21 6 1.8570 7.6349 1.2022 22 6 1.4060 8.1598 0.0056 23 14 0.1943 9.5815 0.0068 24 6 1.1283 11.1935 0.0034 25 6 -0.8801 9.4831 -1.5118 26 6 -0.8736 9.4858 1.5304 27 6 1.8556 7.6360 -1.1921 28 6 2.7479 6.5802 -1.1931 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.8147 -0.8558 -0.0003 33 1 6.2670 -0.7165 0.0002 34 1 8.1486 2.0258 0.8919 35 1 7.9893 1.7747 -1.9961 36 1 6.0601 3.5438 -0.0083 37 1 4.7940 4.9546 -0.8874 38 1 4.7940 4.9539 0.8925 39 1 3.0976 6.1656 2.1361 40 1 1.5086 8.0466 2.1379 41 1 1.7532 11.2496 -0.8879 42 1 0.4213 12.0230 0.0046 43 1 1.7569 11.2510 0.8921 44 1 -1.4266 8.5401 -1.5099 45 1 -1.5874 10.3125 -1.5109 46 1 -0.2553 9.5391 -2.4032 47 1 -0.2449 9.5434 2.4190 48 1 -1.5810 10.3151 1.5310 49 1 -1.4200 8.5426 1.5324 50 1 1.5063 8.0487 -2.1270 51 1 3.0957 6.1679 -2.1288 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_16464166_9403676.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:54:36 Heat of formation + Delta-G solvation = -143.861610 kcal Electronic energy + Delta-G solvation = -31288.696892 eV Core-core repulsion = 27048.980156 eV Total energy + Delta-G solvation = -4239.716736 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87391 -40.71004 -40.01752 -38.97338 -37.44717 -37.12037 -33.40586 -32.78855 -31.83140 -31.13247 -29.55786 -28.93863 -28.41642 -28.39466 -27.72514 -26.88418 -23.81153 -23.58959 -23.43556 -22.15479 -21.66505 -19.39869 -18.70267 -18.38020 -17.74976 -17.54479 -17.33540 -16.90999 -16.56169 -16.32603 -16.08342 -15.90837 -15.72373 -15.49390 -15.15992 -14.60651 -14.41947 -14.32885 -14.20567 -14.18204 -14.09736 -13.93119 -13.83133 -13.57675 -13.37553 -13.27381 -13.25579 -13.22948 -13.08525 -13.07866 -12.81860 -12.53110 -12.33459 -12.22319 -12.16538 -11.80490 -11.71998 -11.62338 -11.26657 -11.01394 -10.88019 -10.79710 -10.62805 -10.13238 -9.71914 -9.63697 -9.41058 -0.43374 0.21401 0.23444 0.60883 1.02118 1.35931 1.43100 1.59736 1.73362 1.78580 1.82909 1.87480 1.89228 2.21558 2.57143 2.60294 3.07148 3.24023 3.42277 3.61080 3.73550 3.80775 3.82282 3.98578 4.02369 4.14203 4.24515 4.26487 4.29459 4.34243 4.34718 4.45188 4.54964 4.64375 4.68515 4.70589 4.72479 4.74072 4.77381 4.78240 4.78629 4.80472 4.93140 5.02140 5.05699 5.19002 5.20352 5.43608 5.48003 5.49672 5.50157 5.53181 5.55577 5.66461 5.67348 6.16453 6.24462 6.39248 6.94213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.505 3.495 4 O -0.482 6.482 5 C -0.160 4.160 6 C -0.015 4.015 7 C -0.180 4.180 8 C -0.043 4.043 9 C -0.089 4.089 10 O -0.535 6.535 11 Si 0.953 3.047 12 H -0.248 1.248 13 H -0.252 1.252 14 H -0.247 1.247 15 C -0.197 4.197 16 C 0.196 3.804 17 O -0.274 6.274 18 C 0.093 3.907 19 C -0.086 4.086 20 C -0.104 4.104 21 C -0.092 4.092 22 C -0.361 4.361 23 Si 1.059 2.941 24 C -0.448 4.448 25 C -0.450 4.450 26 C -0.450 4.450 27 C -0.092 4.092 28 C -0.103 4.103 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.379 0.621 36 H 0.144 0.856 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.123 0.877 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -0.924 -0.113 1.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.349 3.651 4 O -0.369 6.369 5 C -0.162 4.162 6 C -0.033 4.033 7 C -0.198 4.198 8 C -0.043 4.043 9 C -0.199 4.199 10 O -0.340 6.340 11 Si 0.775 3.225 12 H -0.172 1.172 13 H -0.176 1.176 14 H -0.171 1.171 15 C -0.215 4.215 16 C 0.147 3.853 17 O -0.185 6.185 18 C 0.019 3.981 19 C -0.086 4.086 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.402 4.402 23 Si 1.251 2.749 24 C -0.556 4.556 25 C -0.557 4.557 26 C -0.557 4.557 27 C -0.110 4.110 28 C -0.121 4.121 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.167 0.833 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.226 0.774 36 H 0.162 0.838 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.141 0.859 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.306 -1.059 0.335 1.714 hybrid contribution -0.344 -0.022 -0.339 0.484 sum 0.962 -1.081 -0.004 1.447 Atomic orbital electron populations 1.23277 0.75678 1.03818 1.02739 1.86515 1.23746 1.32662 1.84793 1.20831 0.88653 0.81747 0.73907 1.90932 1.66254 1.35540 1.44174 1.18466 0.89854 0.91820 1.16068 1.21270 0.93133 0.97505 0.91423 1.20923 0.94889 0.97124 1.06889 1.20404 0.96491 0.92823 0.94597 1.25156 0.91687 1.10672 0.92425 1.86534 1.78235 1.53981 1.15272 0.85613 0.80559 0.74203 0.82140 1.17162 1.17632 1.17110 1.21063 0.91344 1.00131 1.09005 1.19013 0.89828 0.85813 0.90620 1.86431 1.34340 1.11653 1.86090 1.21801 0.93243 0.80548 1.02533 1.19365 0.99295 0.95808 0.94114 1.21120 0.97315 0.96607 0.97137 1.21057 0.96103 0.95615 0.98214 1.27470 1.07889 1.10675 0.94171 0.78189 0.65120 0.64237 0.67357 1.26114 1.08586 1.16255 1.04618 1.26134 1.09869 1.04737 1.15006 1.26136 1.09804 1.04734 1.15071 1.21059 0.96108 0.95614 0.98203 1.21122 0.97284 0.96588 0.97155 0.91792 0.87873 0.91782 0.83317 0.85126 0.85848 0.77401 0.83796 0.90597 0.90705 0.86217 0.85929 0.91158 0.91025 0.91166 0.91025 0.90954 0.91171 0.91174 0.90954 0.91025 0.85926 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.02 10.57 101.05 1.07 1.09 16 2 O -0.36 -1.01 9.82 -40.63 -0.40 -1.41 16 3 C 0.50 2.39 7.89 34.46 0.27 2.66 16 4 O -0.48 -3.70 14.95 -26.60 -0.40 -4.10 16 5 C -0.16 -0.48 5.88 -104.86 -0.62 -1.10 16 6 C -0.02 -0.01 9.61 -39.18 -0.38 -0.38 16 7 C -0.18 0.07 8.64 -39.64 -0.34 -0.27 16 8 C -0.04 0.01 5.40 -104.57 -0.56 -0.55 16 9 C -0.09 0.14 2.82 36.01 0.10 0.24 16 10 O -0.54 0.48 12.76 -35.23 -0.45 0.03 16 11 Si 0.95 -1.61 25.05 -169.99 -4.26 -5.87 16 12 H -0.25 0.39 7.11 56.52 0.40 0.79 16 13 H -0.25 0.02 7.11 56.52 0.40 0.42 16 14 H -0.25 0.30 7.11 56.52 0.40 0.70 16 15 C -0.20 -0.14 8.58 -39.47 -0.34 -0.47 16 16 C 0.20 0.56 6.70 -38.67 -0.26 0.30 16 17 O -0.27 -1.15 8.19 -40.48 -0.33 -1.49 16 18 C 0.09 0.13 4.86 36.01 0.18 0.31 16 19 C -0.09 -0.22 5.51 -104.62 -0.58 -0.80 16 20 C -0.10 -0.24 9.70 -39.58 -0.38 -0.62 16 21 C -0.09 -0.14 9.29 -39.58 -0.37 -0.50 16 22 C -0.36 -0.32 4.59 -39.58 -0.18 -0.51 16 23 Si 1.06 -1.84 12.32 -169.99 -2.09 -3.94 16 24 C -0.45 0.48 8.65 101.05 0.87 1.36 16 25 C -0.45 0.45 8.54 101.05 0.86 1.31 16 26 C -0.45 0.45 8.53 101.05 0.86 1.31 16 27 C -0.09 -0.14 9.29 -39.58 -0.37 -0.51 16 28 C -0.10 -0.24 9.70 -39.58 -0.38 -0.62 16 29 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 30 H 0.10 -0.23 8.14 -51.93 -0.42 -0.66 16 31 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.15 -0.19 7.61 -52.49 -0.40 -0.59 16 33 H 0.13 -0.27 4.85 -52.49 -0.25 -0.52 16 34 H 0.12 -0.30 7.96 -51.93 -0.41 -0.72 16 35 H 0.38 -1.51 8.70 45.56 0.40 -1.11 16 36 H 0.14 -0.08 6.30 -52.48 -0.33 -0.41 16 37 H 0.08 -0.01 7.59 -51.93 -0.39 -0.41 16 38 H 0.07 -0.02 7.62 -51.93 -0.40 -0.41 16 39 H 0.12 0.12 8.06 -52.49 -0.42 -0.31 16 40 H 0.12 -0.07 7.43 -52.49 -0.39 -0.46 16 41 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 42 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 43 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 44 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 45 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 46 H 0.07 -0.09 7.69 -51.93 -0.40 -0.49 16 47 H 0.07 -0.09 7.69 -51.93 -0.40 -0.49 16 48 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 49 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 50 H 0.12 -0.07 7.44 -52.49 -0.39 -0.46 16 51 H 0.12 0.12 8.06 -52.49 -0.42 -0.30 16 LS Contribution 426.30 15.07 6.42 6.42 Total: 0.00 -8.41 426.30 -9.22 -17.64 By element: Atomic # 1 Polarization: -2.35 SS G_CDS: -7.17 Total: -9.53 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.55 Total: 2.23 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -1.58 Total: -6.96 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: -6.35 Total: -9.80 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -8.41 -9.22 -17.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_9403676.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.223 kcal (2) G-P(sol) polarization free energy of solvation -8.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds