Wall clock time and date at job start Mon Mar 8 2021 09:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34752 * 117.00223 * 2 1 4 4 O 1.21515 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.47401 * 120.00159 * 179.97438 * 3 2 1 6 6 C 1.39724 * 120.19904 * 0.02562 * 5 3 2 7 7 C 1.37805 * 119.90368 * 179.97438 * 6 5 3 8 8 C 1.38520 * 120.30650 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.79490 * 179.97438 * 8 7 6 10 10 O 1.42907 * 109.47033 * 120.00167 * 9 8 7 11 11 Si 1.86297 * 109.47597 * 0.02562 * 9 8 7 12 12 H 1.48498 * 109.47018 * 59.99471 * 11 9 8 13 13 H 1.48496 * 109.47382 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46690 * 300.00044 * 11 9 8 15 15 C 1.38095 * 120.40158 * 359.71669 * 8 7 6 16 16 C 1.38669 * 120.09025 * 0.55947 * 15 8 7 17 17 O 1.35635 * 120.15384 * 179.72152 * 16 15 8 18 18 C 1.42905 * 117.00063 * 359.72243 * 17 16 15 19 19 C 1.50701 * 109.47046 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00243 * 89.99998 * 19 18 17 21 21 C 1.38234 * 120.00240 * 180.02562 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 23 23 Si 1.86796 * 120.00338 * 179.72477 * 22 21 20 24 24 C 1.86298 * 109.47345 * 89.99399 * 23 22 21 25 25 C 1.86292 * 109.47215 * 209.99657 * 23 22 21 26 26 C 1.86304 * 109.46695 * 329.99459 * 23 22 21 27 27 C 1.38238 * 119.99752 * 359.47832 * 22 21 20 28 28 C 1.38234 * 120.00005 * 0.52168 * 27 22 21 29 29 H 1.08998 * 109.46854 * 60.00068 * 1 2 3 30 30 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47078 * 300.00021 * 1 2 3 32 32 H 1.07998 * 120.04907 * 0.02562 * 6 5 3 33 33 H 1.07996 * 119.84605 * 180.02562 * 7 6 5 34 34 H 1.09005 * 109.47190 * 239.99439 * 9 8 7 35 35 H 0.96694 * 113.99611 * 300.00132 * 10 9 8 36 36 H 1.08008 * 119.95515 * 180.27817 * 15 8 7 37 37 H 1.08996 * 109.47095 * 59.99979 * 18 17 16 38 38 H 1.08999 * 109.47350 * 299.99915 * 18 17 16 39 39 H 1.07999 * 119.99751 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47461 * 60.00145 * 24 23 22 42 42 H 1.08995 * 109.47041 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.46941 * 300.00096 * 24 23 22 44 44 H 1.08997 * 109.47556 * 59.99827 * 25 23 22 45 45 H 1.09003 * 109.47107 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47298 * 299.99936 * 25 23 22 47 47 H 1.09004 * 109.47045 * 60.00345 * 26 23 22 48 48 H 1.09003 * 109.47110 * 180.02562 * 26 23 22 49 49 H 1.09000 * 109.47158 * 300.00133 * 26 23 22 50 50 H 1.07999 * 119.99927 * 180.24100 * 27 22 21 51 51 H 1.08001 * 120.00310 * 179.72165 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5358 1.2778 0.0006 6 6 4.3008 0.1086 0.0006 7 6 5.6766 0.1878 0.0006 8 6 6.3057 1.4219 0.0011 9 6 7.8110 1.4950 0.0017 10 8 8.2545 2.1914 -1.1648 11 14 8.5167 -0.2291 0.0007 12 1 8.0566 -0.9516 -1.2123 13 1 9.9999 -0.1569 0.0019 14 1 8.0558 -0.9531 1.2126 15 6 5.5620 2.5854 -0.0042 16 6 4.1766 2.5251 0.0015 17 8 3.4449 3.6671 0.0020 18 6 4.1670 4.9003 0.0025 19 6 3.1947 6.0517 0.0036 20 6 2.7492 6.5791 1.2012 21 6 1.8570 7.6349 1.2022 22 6 1.4060 8.1598 0.0056 23 14 0.1943 9.5815 0.0068 24 6 1.1283 11.1935 0.0034 25 6 -0.8801 9.4831 -1.5118 26 6 -0.8736 9.4858 1.5304 27 6 1.8556 7.6360 -1.1921 28 6 2.7479 6.5802 -1.1931 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.8147 -0.8558 -0.0003 33 1 6.2670 -0.7165 0.0002 34 1 8.1486 2.0258 0.8919 35 1 7.9893 1.7747 -1.9961 36 1 6.0601 3.5438 -0.0083 37 1 4.7940 4.9546 -0.8874 38 1 4.7940 4.9539 0.8925 39 1 3.0976 6.1656 2.1361 40 1 1.5086 8.0466 2.1379 41 1 1.7532 11.2496 -0.8879 42 1 0.4213 12.0230 0.0046 43 1 1.7569 11.2510 0.8921 44 1 -1.4266 8.5401 -1.5099 45 1 -1.5874 10.3125 -1.5109 46 1 -0.2553 9.5391 -2.4032 47 1 -0.2449 9.5434 2.4190 48 1 -1.5810 10.3151 1.5310 49 1 -1.4200 8.5426 1.5324 50 1 1.5063 8.0487 -2.1270 51 1 3.0957 6.1679 -2.1288 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16464166_9403676.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:54:35 Heat of formation + Delta-G solvation = -135.812523 kcal Electronic energy + Delta-G solvation = -31288.347857 eV Core-core repulsion = 27048.980156 eV Total energy + Delta-G solvation = -4239.367701 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02324 -40.91883 -40.08455 -39.02708 -37.49765 -37.33303 -33.47087 -32.84997 -31.91745 -31.19332 -29.46611 -29.02037 -28.32340 -28.28687 -27.76509 -26.92483 -23.85071 -23.68472 -23.52683 -22.25920 -21.78985 -19.51233 -18.81062 -18.44145 -17.88427 -17.61451 -17.54521 -17.05838 -16.62542 -16.23620 -16.07182 -15.92995 -15.76889 -15.59417 -15.11309 -14.61133 -14.53262 -14.43222 -14.35725 -14.09791 -14.07228 -13.90168 -13.75691 -13.60076 -13.45473 -13.31291 -13.15978 -13.13911 -13.11493 -12.99123 -12.86197 -12.54761 -12.29483 -12.26439 -12.07551 -11.86771 -11.84335 -11.66653 -11.54107 -10.94401 -10.80807 -10.78486 -10.55180 -10.16214 -9.83841 -9.71509 -9.49824 -0.53941 0.12283 0.19237 0.48951 1.15266 1.36847 1.51396 1.56438 1.62407 1.80670 1.91728 1.95839 1.99831 2.22333 2.50769 2.64416 2.97842 3.29937 3.53779 3.58424 3.65859 3.75522 3.78982 3.94387 4.01612 4.08382 4.18421 4.23788 4.26345 4.27283 4.32249 4.48230 4.54482 4.64854 4.67282 4.69950 4.82642 4.82848 4.86164 4.86986 4.87508 4.88735 4.89560 4.97229 4.98941 5.12079 5.17083 5.26569 5.36297 5.49009 5.52780 5.56242 5.56866 5.66371 5.67583 6.09040 6.15522 6.65978 6.66520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.503 3.497 4 O -0.523 6.523 5 C -0.185 4.185 6 C -0.010 4.010 7 C -0.178 4.178 8 C -0.036 4.036 9 C -0.088 4.088 10 O -0.548 6.548 11 Si 0.984 3.016 12 H -0.246 1.246 13 H -0.276 1.276 14 H -0.250 1.250 15 C -0.197 4.197 16 C 0.180 3.820 17 O -0.300 6.300 18 C 0.093 3.907 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.105 4.105 22 C -0.375 4.375 23 Si 1.125 2.875 24 C -0.458 4.458 25 C -0.463 4.463 26 C -0.463 4.463 27 C -0.104 4.104 28 C -0.122 4.122 29 H 0.058 0.942 30 H 0.135 0.865 31 H 0.058 0.942 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.391 0.609 36 H 0.154 0.846 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.140 0.860 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -1.304 -0.142 2.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.349 3.651 4 O -0.413 6.413 5 C -0.187 4.187 6 C -0.028 4.028 7 C -0.196 4.196 8 C -0.036 4.036 9 C -0.198 4.198 10 O -0.356 6.356 11 Si 0.807 3.193 12 H -0.169 1.169 13 H -0.202 1.202 14 H -0.174 1.174 15 C -0.215 4.215 16 C 0.132 3.868 17 O -0.212 6.212 18 C 0.019 3.981 19 C -0.103 4.103 20 C -0.140 4.140 21 C -0.122 4.122 22 C -0.413 4.413 23 Si 1.312 2.688 24 C -0.565 4.565 25 C -0.570 4.570 26 C -0.570 4.570 27 C -0.122 4.122 28 C -0.140 4.140 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.184 0.816 33 H 0.169 0.831 34 H 0.151 0.849 35 H 0.241 0.759 36 H 0.172 0.828 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.158 0.842 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.158 0.842 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.884 -1.475 0.295 2.411 hybrid contribution -0.496 0.056 -0.339 0.603 sum 1.389 -1.419 -0.044 1.986 Atomic orbital electron populations 1.23520 0.74546 1.05763 1.02280 1.86512 1.24929 1.31726 1.84316 1.21241 0.89430 0.81616 0.72792 1.90901 1.67216 1.36789 1.46431 1.18631 0.89163 0.92909 1.17985 1.21470 0.93488 0.97341 0.90474 1.21169 0.94631 0.97857 1.05933 1.20623 0.97217 0.92543 0.93265 1.25248 0.90540 1.11210 0.92764 1.86510 1.78326 1.54618 1.16097 0.85169 0.78627 0.73564 0.81892 1.16893 1.20173 1.17436 1.21172 0.90477 1.01080 1.08807 1.19250 0.90650 0.85495 0.91383 1.86393 1.35748 1.12621 1.86460 1.21910 0.93060 0.79510 1.03662 1.19604 0.99934 0.96377 0.94401 1.21369 0.97954 0.97259 0.97448 1.21391 0.95960 0.95529 0.99345 1.28136 1.08073 1.11395 0.93723 0.77217 0.63249 0.62210 0.66106 1.26220 1.08841 1.16889 1.04536 1.26281 1.10286 1.04608 1.15791 1.26282 1.10217 1.04606 1.15856 1.21391 0.95966 0.95529 0.99337 1.21369 0.97933 0.97249 0.97460 0.92291 0.84661 0.92297 0.81635 0.83135 0.84912 0.75938 0.82830 0.89451 0.89450 0.85635 0.84222 0.91265 0.90466 0.91270 0.91669 0.90416 0.90854 0.90852 0.90417 0.91666 0.84225 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.06 10.57 113.37 1.20 1.25 16 2 O -0.36 -2.32 9.82 -56.63 -0.56 -2.87 16 3 C 0.50 5.68 7.89 70.24 0.55 6.23 16 4 O -0.52 -9.48 14.95 26.79 0.40 -9.08 16 5 C -0.18 -1.33 5.88 -20.02 -0.12 -1.45 16 6 C -0.01 -0.01 9.61 22.53 0.22 0.21 16 7 C -0.18 0.33 8.64 22.23 0.19 0.52 16 8 C -0.04 0.05 5.40 -19.83 -0.11 -0.06 16 9 C -0.09 0.36 2.82 71.24 0.20 0.57 16 10 O -0.55 1.47 12.76 -148.98 -1.90 -0.43 16 11 Si 0.98 -4.46 25.05 68.60 1.72 -2.74 16 12 H -0.25 1.20 7.11 99.48 0.71 1.91 16 13 H -0.28 0.10 7.11 99.48 0.71 0.81 16 14 H -0.25 0.98 7.11 99.48 0.71 1.69 16 15 C -0.20 -0.32 8.58 22.34 0.19 -0.13 16 16 C 0.18 1.28 6.70 22.86 0.15 1.43 16 17 O -0.30 -3.18 8.19 -68.57 -0.56 -3.74 16 18 C 0.09 0.41 4.86 71.24 0.35 0.76 16 19 C -0.10 -0.73 5.51 -19.86 -0.11 -0.84 16 20 C -0.12 -0.78 9.70 22.27 0.22 -0.56 16 21 C -0.10 -0.42 9.29 22.27 0.21 -0.21 16 22 C -0.37 -0.95 4.59 22.27 0.10 -0.84 16 23 Si 1.12 -4.07 12.32 68.60 0.85 -3.22 16 24 C -0.46 1.21 8.65 113.37 0.98 2.19 16 25 C -0.46 0.99 8.54 113.37 0.97 1.95 16 26 C -0.46 0.99 8.53 113.37 0.97 1.96 16 27 C -0.10 -0.42 9.29 22.27 0.21 -0.22 16 28 C -0.12 -0.78 9.70 22.27 0.22 -0.56 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.14 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.17 -0.55 7.61 -2.91 -0.02 -0.57 16 33 H 0.15 -0.91 4.85 -2.91 -0.01 -0.93 16 34 H 0.13 -0.80 7.96 -2.38 -0.02 -0.82 16 35 H 0.39 -3.47 8.70 -74.06 -0.64 -4.11 16 36 H 0.15 -0.15 6.30 -2.91 -0.02 -0.17 16 37 H 0.09 0.09 7.59 -2.39 -0.02 0.07 16 38 H 0.09 0.07 7.62 -2.39 -0.02 0.05 16 39 H 0.13 0.48 8.06 -2.91 -0.02 0.45 16 40 H 0.14 -0.08 7.43 -2.91 -0.02 -0.10 16 41 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 42 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 45 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 46 H 0.07 -0.20 7.69 -2.39 -0.02 -0.22 16 47 H 0.07 -0.20 7.69 -2.38 -0.02 -0.22 16 48 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 49 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 50 H 0.14 -0.08 7.44 -2.91 -0.02 -0.10 16 51 H 0.13 0.49 8.06 -2.91 -0.02 0.46 16 Total: 0.00 -20.94 426.30 7.58 -13.36 By element: Atomic # 1 Polarization: -4.53 SS G_CDS: 1.05 Total: -3.48 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.58 Total: 12.20 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -2.62 Total: -16.12 kcal Atomic # 14 Polarization: -8.52 SS G_CDS: 2.56 Total: -5.96 kcal Total: -20.94 7.58 -13.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16464166_9403676.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.448 kcal (2) G-P(sol) polarization free energy of solvation -20.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds