Wall clock time and date at job start Mon Mar 8 2021 12:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35973 * 117.00021 * 2 1 4 4 C 1.38675 * 119.99913 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00206 * 359.96600 * 4 3 2 6 6 C 1.38153 * 120.00118 * 179.97438 * 4 3 2 7 7 C 1.38673 * 120.00095 * 0.02562 * 6 4 3 8 8 O 1.35983 * 120.00552 * 180.02562 * 7 6 4 9 9 C 1.42903 * 116.99766 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.47310 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46884 * 54.99850 * 10 9 8 12 12 C 1.52997 * 109.47055 * 174.99888 * 10 9 8 13 13 C 1.53001 * 109.47055 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.46994 * 300.00329 * 13 12 10 15 15 H 1.09001 * 109.47005 * 299.99559 * 14 13 12 16 16 O 1.42903 * 109.46903 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47488 * 59.99936 * 14 13 12 18 18 C 1.52998 * 109.46994 * 295.00217 * 10 9 8 19 19 C 1.38725 * 119.99755 * 0.02562 * 7 6 4 20 20 C 1.50702 * 119.99961 * 179.72699 * 19 7 6 21 21 O 1.42900 * 109.47383 * 74.99456 * 20 19 7 22 22 Si 1.86300 * 109.47287 * 194.99986 * 20 19 7 23 23 C 1.38104 * 119.99930 * 359.97438 * 19 7 6 24 24 H 1.09005 * 109.47237 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47470 * 300.00151 * 1 2 3 26 26 H 1.09001 * 109.47066 * 59.99695 * 1 2 3 27 27 H 1.09001 * 109.46857 * 270.01821 * 5 4 3 28 28 H 1.09002 * 109.47370 * 30.01503 * 5 4 3 29 29 H 1.08999 * 109.47501 * 150.01687 * 5 4 3 30 30 H 1.08002 * 120.00329 * 179.97438 * 6 4 3 31 31 H 1.09000 * 109.47190 * 300.00342 * 9 8 7 32 32 H 1.08998 * 109.46847 * 59.99856 * 9 8 7 33 33 H 1.09000 * 109.47317 * 300.00061 * 12 10 9 34 34 H 1.09001 * 109.47306 * 60.00220 * 12 10 9 35 35 H 1.08997 * 109.47173 * 60.00380 * 13 12 10 36 36 H 1.08997 * 109.46995 * 180.02562 * 13 12 10 37 37 H 0.96708 * 113.99699 * 180.02562 * 16 14 13 38 38 H 1.08997 * 109.46820 * 59.99863 * 17 14 13 39 39 H 1.09000 * 109.47317 * 179.97438 * 17 14 13 40 40 H 1.09001 * 109.47005 * 299.99559 * 18 10 9 41 41 H 1.08996 * 109.47257 * 59.99509 * 18 10 9 42 42 H 1.09006 * 109.46747 * 314.99598 * 20 19 7 43 43 H 0.96699 * 113.99828 * 180.02562 * 21 20 19 44 44 H 1.48496 * 110.00144 * 178.67863 * 22 20 19 45 45 H 1.48500 * 109.99452 * 299.99756 * 22 20 19 46 46 H 1.08001 * 119.99608 * 179.97438 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4312 1.2841 0.0005 5 6 4.2520 0.0202 0.0019 6 6 4.0584 2.5150 0.0000 7 6 3.3032 3.6781 -0.0005 8 8 3.9205 4.8897 -0.0016 9 6 5.3496 4.8897 -0.0015 10 6 5.8596 6.3322 -0.0021 11 1 5.4249 6.8716 0.8394 12 6 7.3844 6.3340 0.1237 13 6 7.8944 7.7765 0.1237 14 6 7.4896 8.4605 -1.1836 15 1 7.9244 7.9215 -2.0254 16 8 7.9665 9.8076 -1.1838 17 6 5.9649 8.4587 -1.3095 18 6 5.4549 7.0156 -1.3098 19 6 1.9179 3.6055 0.0000 20 6 1.0971 4.8694 0.0056 21 8 1.1295 5.4642 -1.2933 22 14 -0.6637 4.4644 0.4596 23 6 1.2909 2.3750 0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 4.4491 -0.2838 1.0299 28 1 3.7038 -0.7696 -0.5118 29 1 5.1966 0.1998 -0.5114 30 1 5.1370 2.5716 0.0008 31 1 5.7129 4.3766 0.8889 32 1 5.7129 4.3750 -0.8910 33 1 7.6727 5.8471 1.0553 34 1 7.8191 5.7946 -0.7179 35 1 7.4598 8.3155 0.9655 36 1 8.9807 7.7778 0.2129 37 1 7.7453 10.3030 -1.9844 38 1 5.5302 8.9977 -0.4677 39 1 5.6765 8.9464 -2.2406 40 1 5.8896 6.4762 -2.1513 41 1 4.3686 7.0143 -1.3994 42 1 1.5092 5.5669 0.7350 43 1 0.6213 6.2839 -1.3632 44 1 -1.4764 5.7066 0.4998 45 1 -1.2368 3.5141 -0.5272 46 1 0.2124 2.3185 0.0014 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_16525068_16737256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:47:00 Heat of formation + Delta-G solvation = -144.130169 kcal Electronic energy + Delta-G solvation = -26546.047989 eV Core-core repulsion = 22788.355654 eV Total energy + Delta-G solvation = -3757.692335 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67793 -40.45600 -39.61563 -38.11952 -37.28649 -36.54924 -34.13618 -31.92686 -31.85860 -30.24686 -29.22482 -28.38435 -26.68798 -24.93304 -23.83401 -23.35169 -22.16158 -21.88867 -20.86405 -18.64785 -18.50652 -18.46260 -18.17381 -17.87456 -17.00108 -16.65772 -16.40833 -15.88197 -15.75027 -15.50442 -15.34055 -15.14436 -14.75493 -14.53577 -14.34722 -14.14984 -14.03674 -13.79168 -13.56006 -13.36831 -13.24389 -13.17364 -12.91636 -12.72252 -12.64888 -12.61309 -12.25481 -12.13161 -11.81274 -11.74379 -11.66003 -11.47659 -11.23930 -11.08691 -10.72046 -10.37670 -9.83038 -8.58273 -4.99866 0.16408 0.52522 1.27582 1.54853 1.90162 2.20496 2.39916 2.60859 3.15244 3.39162 3.59160 3.67145 3.70647 3.74626 3.83650 4.00268 4.03523 4.07592 4.11320 4.18851 4.25139 4.25903 4.30888 4.31988 4.39639 4.42261 4.46764 4.55811 4.56534 4.57463 4.62296 4.75822 4.79701 4.82778 4.91909 4.98957 5.02995 5.07410 5.12139 5.13182 5.17876 5.29528 5.31878 5.40012 5.47198 5.64678 6.34633 6.48858 6.58982 6.69785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.094 3.906 4 C -0.068 4.068 5 C -0.109 4.109 6 C -0.174 4.174 7 C 0.127 3.873 8 O -0.302 6.302 9 C 0.062 3.938 10 C -0.086 4.086 11 H 0.084 0.916 12 C -0.110 4.110 13 C -0.111 4.111 14 C 0.102 3.898 15 H 0.054 0.946 16 O -0.570 6.570 17 C -0.151 4.151 18 C -0.110 4.110 19 C -0.074 4.074 20 C -0.062 4.062 21 O -0.529 6.529 22 Si 0.678 3.322 23 C -0.163 4.163 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.379 0.621 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.376 0.624 44 H -0.259 1.259 45 H -0.256 1.256 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -1.115 1.564 1.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.049 3.951 4 C -0.069 4.069 5 C -0.165 4.165 6 C -0.193 4.193 7 C 0.081 3.919 8 O -0.215 6.215 9 C -0.014 4.014 10 C -0.104 4.104 11 H 0.102 0.898 12 C -0.148 4.148 13 C -0.148 4.148 14 C 0.044 3.956 15 H 0.072 0.928 16 O -0.375 6.375 17 C -0.189 4.189 18 C -0.148 4.148 19 C -0.075 4.075 20 C -0.171 4.171 21 O -0.336 6.336 22 Si 0.580 3.420 23 C -0.181 4.181 24 H 0.121 0.879 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.224 0.776 44 H -0.184 1.184 45 H -0.181 1.181 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.679 -1.792 1.783 2.618 hybrid contribution -0.250 1.125 -1.413 1.823 sum -0.928 -0.668 0.370 1.202 Atomic orbital electron populations 1.23115 0.78375 1.04276 1.01413 1.86079 1.21221 1.26128 1.89127 1.18541 0.91575 0.84166 1.00823 1.19085 0.90594 0.95681 1.01525 1.20671 0.98798 0.94308 1.02739 1.20990 1.00112 0.90830 1.07353 1.18541 0.91161 0.84359 0.97820 1.86107 1.20782 1.26142 1.88511 1.22893 0.78745 0.98269 1.01452 1.21202 0.95554 0.93867 0.99809 0.89777 1.21479 0.93754 0.96655 1.02881 1.21435 1.01683 0.94691 0.97025 1.21853 0.92695 0.82993 0.98083 0.92764 1.86517 1.80552 1.24955 1.45512 1.22283 0.96292 0.97660 1.02688 1.21510 1.01995 0.94660 0.96627 1.18238 0.90445 0.93217 1.05597 1.24573 1.09356 0.95037 0.88174 1.86623 1.74222 1.42997 1.29786 0.95215 0.74790 0.82507 0.89474 1.20972 1.00050 0.91147 1.05949 0.87903 0.92368 0.92853 0.90811 0.90706 0.91510 0.84562 0.91846 0.91967 0.90761 0.91303 0.90954 0.90857 0.77406 0.91017 0.91618 0.91884 0.90506 0.90513 0.77641 1.18375 1.18081 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.31 -0.70 9.54 -19.66 -0.19 -0.89 16 3 C 0.09 0.26 6.66 -39.24 -0.26 0.00 16 4 C -0.07 -0.15 5.89 -104.49 -0.62 -0.77 16 5 C -0.11 -0.05 9.79 36.01 0.35 0.31 16 6 C -0.17 -0.32 8.69 -39.45 -0.34 -0.66 16 7 C 0.13 0.37 6.66 -39.24 -0.26 0.11 16 8 O -0.30 -0.72 9.00 -19.69 -0.18 -0.90 16 9 C 0.06 -0.01 4.12 37.16 0.15 0.14 16 10 C -0.09 0.06 2.43 -90.62 -0.22 -0.16 16 11 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 12 C -0.11 0.17 5.20 -26.73 -0.14 0.03 16 13 C -0.11 0.02 5.57 -26.73 -0.15 -0.13 16 14 C 0.10 0.01 3.47 -26.73 -0.09 -0.08 16 15 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 16 O -0.57 -0.75 13.32 -35.23 -0.47 -1.22 16 17 C -0.15 0.06 5.55 -26.70 -0.15 -0.09 16 18 C -0.11 0.02 5.10 -26.70 -0.14 -0.12 16 19 C -0.07 -0.22 5.31 -104.49 -0.55 -0.77 16 20 C -0.06 -0.09 2.36 36.01 0.09 -0.01 16 21 O -0.53 -1.36 12.86 -35.23 -0.45 -1.81 16 22 Si 0.68 -0.04 30.19 -169.99 -5.13 -5.17 16 23 C -0.16 -0.39 7.64 -39.45 -0.30 -0.69 16 24 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 25 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 26 H 0.05 -0.04 7.66 -51.93 -0.40 -0.44 16 27 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.07 0.07 7.53 -51.93 -0.39 -0.32 16 29 H 0.07 -0.05 8.09 -51.93 -0.42 -0.47 16 30 H 0.14 -0.04 6.29 -52.49 -0.33 -0.37 16 31 H 0.06 -0.08 7.66 -51.93 -0.40 -0.48 16 32 H 0.06 -0.04 7.66 -51.93 -0.40 -0.44 16 33 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 34 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 36 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 37 H 0.38 -0.93 9.08 45.56 0.41 -0.52 16 38 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 40 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 41 H 0.08 0.09 7.82 -51.93 -0.41 -0.31 16 42 H 0.08 0.05 7.83 -51.93 -0.41 -0.35 16 43 H 0.38 -0.54 8.74 45.56 0.40 -0.14 16 44 H -0.26 -0.44 7.11 56.52 0.40 -0.04 16 45 H -0.26 -0.57 6.75 56.52 0.38 -0.19 16 46 H 0.14 0.12 3.13 -52.49 -0.16 -0.04 16 LS Contribution 361.72 15.07 5.45 5.45 Total: 0.00 -6.99 361.72 -9.37 -16.36 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: -6.76 Total: -9.90 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.64 Total: -1.92 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -1.29 Total: -4.82 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: -5.13 Total: -5.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -6.99 -9.37 -16.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16525068_16737256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.772 kcal (2) G-P(sol) polarization free energy of solvation -6.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds