Wall clock time and date at job start Mon Mar 8 2021 12:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35973 * 117.00021 * 2 1 4 4 C 1.38675 * 119.99913 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00206 * 359.96600 * 4 3 2 6 6 C 1.38153 * 120.00118 * 179.97438 * 4 3 2 7 7 C 1.38673 * 120.00095 * 0.02562 * 6 4 3 8 8 O 1.35983 * 120.00552 * 180.02562 * 7 6 4 9 9 C 1.42903 * 116.99766 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.47310 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46884 * 54.99850 * 10 9 8 12 12 C 1.52997 * 109.47055 * 174.99888 * 10 9 8 13 13 C 1.53001 * 109.47055 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.46994 * 300.00329 * 13 12 10 15 15 H 1.09001 * 109.47005 * 299.99559 * 14 13 12 16 16 O 1.42903 * 109.46903 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47488 * 59.99936 * 14 13 12 18 18 C 1.52998 * 109.46994 * 295.00217 * 10 9 8 19 19 C 1.38725 * 119.99755 * 0.02562 * 7 6 4 20 20 C 1.50702 * 119.99961 * 179.72699 * 19 7 6 21 21 O 1.42900 * 109.47383 * 74.99456 * 20 19 7 22 22 Si 1.86300 * 109.47287 * 194.99986 * 20 19 7 23 23 C 1.38104 * 119.99930 * 359.97438 * 19 7 6 24 24 H 1.09005 * 109.47237 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47470 * 300.00151 * 1 2 3 26 26 H 1.09001 * 109.47066 * 59.99695 * 1 2 3 27 27 H 1.09001 * 109.46857 * 270.01821 * 5 4 3 28 28 H 1.09002 * 109.47370 * 30.01503 * 5 4 3 29 29 H 1.08999 * 109.47501 * 150.01687 * 5 4 3 30 30 H 1.08002 * 120.00329 * 179.97438 * 6 4 3 31 31 H 1.09000 * 109.47190 * 300.00342 * 9 8 7 32 32 H 1.08998 * 109.46847 * 59.99856 * 9 8 7 33 33 H 1.09000 * 109.47317 * 300.00061 * 12 10 9 34 34 H 1.09001 * 109.47306 * 60.00220 * 12 10 9 35 35 H 1.08997 * 109.47173 * 60.00380 * 13 12 10 36 36 H 1.08997 * 109.46995 * 180.02562 * 13 12 10 37 37 H 0.96708 * 113.99699 * 180.02562 * 16 14 13 38 38 H 1.08997 * 109.46820 * 59.99863 * 17 14 13 39 39 H 1.09000 * 109.47317 * 179.97438 * 17 14 13 40 40 H 1.09001 * 109.47005 * 299.99559 * 18 10 9 41 41 H 1.08996 * 109.47257 * 59.99509 * 18 10 9 42 42 H 1.09006 * 109.46747 * 314.99598 * 20 19 7 43 43 H 0.96699 * 113.99828 * 180.02562 * 21 20 19 44 44 H 1.48496 * 110.00144 * 178.67863 * 22 20 19 45 45 H 1.48500 * 109.99452 * 299.99756 * 22 20 19 46 46 H 1.08001 * 119.99608 * 179.97438 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4312 1.2841 0.0005 5 6 4.2520 0.0202 0.0019 6 6 4.0584 2.5150 0.0000 7 6 3.3032 3.6781 -0.0005 8 8 3.9205 4.8897 -0.0016 9 6 5.3496 4.8897 -0.0015 10 6 5.8596 6.3322 -0.0021 11 1 5.4249 6.8716 0.8394 12 6 7.3844 6.3340 0.1237 13 6 7.8944 7.7765 0.1237 14 6 7.4896 8.4605 -1.1836 15 1 7.9244 7.9215 -2.0254 16 8 7.9665 9.8076 -1.1838 17 6 5.9649 8.4587 -1.3095 18 6 5.4549 7.0156 -1.3098 19 6 1.9179 3.6055 0.0000 20 6 1.0971 4.8694 0.0056 21 8 1.1295 5.4642 -1.2933 22 14 -0.6637 4.4644 0.4596 23 6 1.2909 2.3750 0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 4.4491 -0.2838 1.0299 28 1 3.7038 -0.7696 -0.5118 29 1 5.1966 0.1998 -0.5114 30 1 5.1370 2.5716 0.0008 31 1 5.7129 4.3766 0.8889 32 1 5.7129 4.3750 -0.8910 33 1 7.6727 5.8471 1.0553 34 1 7.8191 5.7946 -0.7179 35 1 7.4598 8.3155 0.9655 36 1 8.9807 7.7778 0.2129 37 1 7.7453 10.3030 -1.9844 38 1 5.5302 8.9977 -0.4677 39 1 5.6765 8.9464 -2.2406 40 1 5.8896 6.4762 -2.1513 41 1 4.3686 7.0143 -1.3994 42 1 1.5092 5.5669 0.7350 43 1 0.6213 6.2839 -1.3632 44 1 -1.4764 5.7066 0.4998 45 1 -1.2368 3.5141 -0.5272 46 1 0.2124 2.3185 0.0014 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16525068_16737256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:46:59 Heat of formation + Delta-G solvation = -142.477638 kcal Electronic energy + Delta-G solvation = -26545.976330 eV Core-core repulsion = 22788.355654 eV Total energy + Delta-G solvation = -3757.620676 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76313 -40.47775 -39.65747 -38.21418 -37.37368 -36.58311 -34.22598 -31.93989 -31.82888 -30.32072 -29.28988 -28.36231 -26.68894 -25.00303 -23.80672 -23.40041 -22.23451 -21.92492 -20.83674 -18.73057 -18.60423 -18.55358 -18.19677 -17.96427 -17.02705 -16.68278 -16.43403 -15.93823 -15.79189 -15.49804 -15.42986 -15.18850 -14.76387 -14.59730 -14.35861 -14.16337 -14.10454 -13.80825 -13.63847 -13.39077 -13.21279 -13.18103 -12.95372 -12.74480 -12.64781 -12.60315 -12.25127 -12.11427 -11.91451 -11.78237 -11.65006 -11.49606 -11.26772 -11.07338 -10.72936 -10.46686 -9.93910 -8.70285 -5.01266 0.04410 0.38826 1.22949 1.51203 1.83860 2.16560 2.38047 2.49477 3.21744 3.34223 3.62832 3.64315 3.69425 3.71722 3.82554 3.95587 3.98487 4.08736 4.14764 4.22891 4.28580 4.32034 4.35770 4.36277 4.37952 4.47048 4.48649 4.52479 4.54823 4.59471 4.71276 4.77943 4.81000 4.82733 4.91719 4.98409 5.05708 5.07035 5.08239 5.13931 5.17734 5.25365 5.32297 5.38113 5.42692 5.56797 6.28567 6.46362 6.58720 6.83222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.080 3.920 4 C -0.080 4.080 5 C -0.106 4.106 6 C -0.175 4.175 7 C 0.113 3.887 8 O -0.315 6.315 9 C 0.058 3.942 10 C -0.081 4.081 11 H 0.075 0.925 12 C -0.103 4.103 13 C -0.113 4.113 14 C 0.101 3.899 15 H 0.061 0.939 16 O -0.590 6.590 17 C -0.145 4.145 18 C -0.106 4.106 19 C -0.093 4.093 20 C -0.075 4.075 21 O -0.552 6.552 22 Si 0.758 3.242 23 C -0.169 4.169 24 H 0.121 0.879 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.393 0.607 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.390 0.610 44 H -0.280 1.280 45 H -0.287 1.287 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 -1.587 1.798 2.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.035 3.965 4 C -0.081 4.081 5 C -0.162 4.162 6 C -0.193 4.193 7 C 0.067 3.933 8 O -0.229 6.229 9 C -0.017 4.017 10 C -0.099 4.099 11 H 0.094 0.906 12 C -0.141 4.141 13 C -0.150 4.150 14 C 0.042 3.958 15 H 0.079 0.921 16 O -0.398 6.398 17 C -0.183 4.183 18 C -0.144 4.144 19 C -0.094 4.094 20 C -0.183 4.183 21 O -0.361 6.361 22 Si 0.662 3.338 23 C -0.187 4.187 24 H 0.139 0.861 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.242 0.758 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.240 0.760 44 H -0.207 1.207 45 H -0.214 1.214 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.253 -2.248 2.016 3.030 hybrid contribution -0.379 1.302 -1.525 2.040 sum -0.632 -0.946 0.491 1.239 Atomic orbital electron populations 1.23360 0.77055 1.05707 1.01951 1.86058 1.22705 1.26008 1.89136 1.18767 0.92113 0.84480 1.01117 1.19392 0.90801 0.96533 1.01331 1.20685 0.98977 0.93274 1.03289 1.21205 1.01059 0.90342 1.06714 1.18749 0.91496 0.84857 0.98189 1.86091 1.22086 1.26151 1.88555 1.23040 0.77660 0.98615 1.02350 1.21151 0.96148 0.93532 0.99080 0.90608 1.21435 0.92839 0.95907 1.03869 1.21460 1.01508 0.95443 0.96603 1.21915 0.92720 0.82686 0.98443 0.92064 1.86481 1.80850 1.25672 1.46829 1.22214 0.96119 0.97454 1.02535 1.21452 1.00910 0.94896 0.97139 1.18515 0.90992 0.93859 1.06013 1.24845 1.10772 0.94800 0.87883 1.86572 1.74999 1.44064 1.30488 0.94262 0.71942 0.79790 0.87767 1.21093 1.00561 0.91033 1.06019 0.86093 0.91054 0.93103 0.90070 0.91397 0.90185 0.82680 0.90529 0.91373 0.89654 0.90419 0.91941 0.91051 0.75788 0.92045 0.91052 0.91577 0.92131 0.90067 0.76004 1.20693 1.21393 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.32 -1.59 9.54 -93.25 -0.89 -2.48 16 3 C 0.08 0.50 6.66 22.49 0.15 0.65 16 4 C -0.08 -0.37 5.89 -19.78 -0.12 -0.49 16 5 C -0.11 -0.06 9.79 71.24 0.70 0.64 16 6 C -0.17 -0.63 8.69 22.35 0.19 -0.44 16 7 C 0.11 0.72 6.66 22.49 0.15 0.87 16 8 O -0.31 -1.66 9.00 -93.35 -0.84 -2.50 16 9 C 0.06 -0.04 4.12 71.98 0.30 0.25 16 10 C -0.08 0.11 2.43 -10.79 -0.03 0.09 16 11 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 12 C -0.10 0.38 5.20 30.59 0.16 0.54 16 13 C -0.11 0.04 5.57 30.59 0.17 0.21 16 14 C 0.10 0.02 3.47 30.59 0.11 0.13 16 15 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 16 O -0.59 -1.66 13.32 -148.98 -1.98 -3.64 16 17 C -0.15 0.05 5.55 30.61 0.17 0.22 16 18 C -0.11 -0.01 5.10 30.61 0.16 0.15 16 19 C -0.09 -0.62 5.31 -19.78 -0.10 -0.72 16 20 C -0.07 -0.28 2.36 71.24 0.17 -0.12 16 21 O -0.55 -3.36 12.86 -148.98 -1.92 -5.28 16 22 Si 0.76 0.15 30.19 68.60 2.07 2.22 16 23 C -0.17 -0.92 7.64 22.35 0.17 -0.75 16 24 H 0.12 -0.69 8.14 -2.38 -0.02 -0.71 16 25 H 0.07 -0.31 7.66 -2.39 -0.02 -0.33 16 26 H 0.05 -0.06 7.66 -2.39 -0.02 -0.08 16 27 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.07 0.14 7.53 -2.39 -0.02 0.12 16 29 H 0.08 -0.19 8.09 -2.39 -0.02 -0.21 16 30 H 0.16 -0.21 6.29 -2.91 -0.02 -0.23 16 31 H 0.08 -0.26 7.66 -2.39 -0.02 -0.28 16 32 H 0.07 -0.13 7.66 -2.39 -0.02 -0.15 16 33 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.39 -1.90 9.08 -74.05 -0.67 -2.57 16 38 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.06 0.22 7.82 -2.39 -0.02 0.20 16 42 H 0.08 0.18 7.83 -2.38 -0.02 0.16 16 43 H 0.39 -0.78 8.74 -74.06 -0.65 -1.43 16 44 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 45 H -0.29 -1.49 6.75 99.48 0.67 -0.82 16 46 H 0.15 0.35 3.13 -2.91 -0.01 0.35 16 Total: 0.00 -16.34 361.72 -0.44 -16.77 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: -0.33 Total: -7.40 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 3.45 Total: 2.32 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -5.63 Total: -13.90 kcal Atomic # 14 Polarization: 0.15 SS G_CDS: 2.07 Total: 2.22 kcal Total: -16.34 -0.44 -16.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16525068_16737256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.704 kcal (2) G-P(sol) polarization free energy of solvation -16.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds